Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02195 and LRK53_RS02200 are separated by 121 nucleotides LRK53_RS02200 and LRK53_RS02205 are separated by 227 nucleotides LRK53_RS02205 and LRK53_RS02210 are separated by 77 nucleotides
LRK53_RS02195: LRK53_RS02195 - F0F1 ATP synthase subunit beta, at 512,065 to 513,477
_RS02195
LRK53_RS02200: LRK53_RS02200 - F0F1 ATP synthase subunit epsilon, at 513,599 to 514,024
_RS02200
LRK53_RS02205: LRK53_RS02205 - hypothetical protein, at 514,252 to 514,788
_RS02205
LRK53_RS02210: LRK53_RS02210 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 514,866 to 516,260
_RS02210
Position (kb) 514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.022 kb on + strand at 514.022 kb on + strand at 514.023 kb on - strand at 514.023 kb on - strand at 514.023 kb on - strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.222 kb on + strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.223 kb on - strand at 514.273 kb on - strand at 514.462 kb on + strand, within LRK53_RS02205 at 514.462 kb on + strand, within LRK53_RS02205 at 514.462 kb on + strand, within LRK53_RS02205 at 514.463 kb on - strand, within LRK53_RS02205 at 514.463 kb on - strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.723 kb on + strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.724 kb on - strand, within LRK53_RS02205 at 514.826 kb on + strand at 514.826 kb on + strand at 514.826 kb on + strand at 514.826 kb on + strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.827 kb on - strand at 514.860 kb on + strand at 514.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 514,022 + +0.5 514,022 + -0.7 514,023 - +1.0 514,023 - -0.1 514,023 - -0.1 514,222 + +0.0 514,222 + -1.4 514,222 + +1.2 514,222 + -1.0 514,222 + -0.0 514,222 + -0.0 514,222 + -1.8 514,223 - -1.3 514,223 - -0.8 514,223 - +0.1 514,223 - +0.1 514,223 - -2.5 514,223 - -2.0 514,223 - +0.8 514,223 - -0.8 514,223 - -0.4 514,223 - -0.6 514,223 - -0.4 514,223 - -1.5 514,273 - -1.7 514,462 + LRK53_RS02205 0.39 -1.4 514,462 + LRK53_RS02205 0.39 -0.9 514,462 + LRK53_RS02205 0.39 +1.0 514,463 - LRK53_RS02205 0.39 -2.6 514,463 - LRK53_RS02205 0.39 -0.0 514,723 + LRK53_RS02205 0.88 -1.6 514,723 + LRK53_RS02205 0.88 -0.4 514,723 + LRK53_RS02205 0.88 -2.4 514,723 + LRK53_RS02205 0.88 -1.6 514,723 + LRK53_RS02205 0.88 -3.0 514,723 + LRK53_RS02205 0.88 -1.0 514,723 + LRK53_RS02205 0.88 -0.9 514,723 + LRK53_RS02205 0.88 +2.2 514,723 + LRK53_RS02205 0.88 -0.3 514,723 + LRK53_RS02205 0.88 -1.3 514,723 + LRK53_RS02205 0.88 -0.5 514,723 + LRK53_RS02205 0.88 -0.0 514,723 + LRK53_RS02205 0.88 -1.8 514,724 - LRK53_RS02205 0.88 -0.2 514,724 - LRK53_RS02205 0.88 -0.9 514,724 - LRK53_RS02205 0.88 -1.3 514,724 - LRK53_RS02205 0.88 -0.6 514,724 - LRK53_RS02205 0.88 -0.6 514,724 - LRK53_RS02205 0.88 -1.6 514,724 - LRK53_RS02205 0.88 -0.0 514,724 - LRK53_RS02205 0.88 -0.6 514,724 - LRK53_RS02205 0.88 -1.0 514,724 - LRK53_RS02205 0.88 -0.6 514,724 - LRK53_RS02205 0.88 -0.4 514,724 - LRK53_RS02205 0.88 -0.6 514,826 + -1.0 514,826 + -1.2 514,826 + +0.3 514,826 + -1.4 514,827 - +0.2 514,827 - -0.4 514,827 - -1.2 514,827 - +1.3 514,827 - -0.2 514,827 - -1.8 514,827 - -0.8 514,827 - +2.6 514,827 - -0.6 514,827 - -0.0 514,827 - +1.0 514,860 + -0.3 514,860 + +1.0
Or see this region's nucleotide sequence