Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01685 and LRK53_RS01690 are separated by 203 nucleotides LRK53_RS01690 and LRK53_RS01695 are separated by 90 nucleotides LRK53_RS01695 and LRK53_RS01700 are separated by 78 nucleotides
LRK53_RS01685: LRK53_RS01685 - YceI family protein, at 397,896 to 398,489
_RS01685
LRK53_RS01690: LRK53_RS01690 - YIP1 family protein, at 398,693 to 399,253
_RS01690
LRK53_RS01695: LRK53_RS01695 - zinc-finger domain-containing protein, at 399,344 to 399,553
_RS01695
LRK53_RS01700: LRK53_RS01700 - glycosyltransferase, at 399,632 to 400,759
_RS01700
Position (kb) 399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.649 kb on + strand at 398.649 kb on + strand at 398.650 kb on - strand at 398.650 kb on - strand at 398.650 kb on - strand at 398.695 kb on - strand at 398.695 kb on - strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 399.015 kb on + strand, within LRK53_RS01690 at 399.015 kb on + strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.016 kb on - strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.024 kb on + strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.025 kb on - strand, within LRK53_RS01690 at 399.033 kb on + strand, within LRK53_RS01690 at 399.117 kb on + strand, within LRK53_RS01690 at 399.117 kb on + strand, within LRK53_RS01690 at 399.118 kb on - strand, within LRK53_RS01690 at 399.118 kb on - strand, within LRK53_RS01690 at 399.201 kb on + strand at 399.201 kb on + strand at 399.202 kb on - strand at 399.202 kb on - strand at 399.225 kb on + strand at 399.225 kb on + strand at 399.225 kb on + strand at 399.225 kb on + strand at 399.225 kb on + strand at 399.225 kb on + strand at 399.226 kb on - strand at 399.226 kb on - strand at 399.226 kb on - strand at 399.226 kb on - strand at 399.306 kb on + strand at 399.306 kb on + strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.401 kb on + strand, within LRK53_RS01695 at 399.479 kb on + strand, within LRK53_RS01695 at 399.479 kb on + strand, within LRK53_RS01695 at 399.479 kb on + strand, within LRK53_RS01695 at 399.479 kb on + strand, within LRK53_RS01695 at 399.479 kb on + strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.480 kb on - strand, within LRK53_RS01695 at 399.521 kb on + strand, within LRK53_RS01695 at 399.521 kb on + strand, within LRK53_RS01695 at 399.522 kb on - strand, within LRK53_RS01695 at 399.522 kb on - strand, within LRK53_RS01695 at 399.522 kb on - strand, within LRK53_RS01695 at 399.522 kb on - strand, within LRK53_RS01695 at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.536 kb on + strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 399.537 kb on - strand at 400.022 kb on + strand, within LRK53_RS01700 at 400.098 kb on - strand, within LRK53_RS01700 at 400.460 kb on + strand, within LRK53_RS01700 at 400.461 kb on - strand, within LRK53_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 398,409 + LRK53_RS01685 0.86 -1.1 398,409 + LRK53_RS01685 0.86 -0.5 398,409 + LRK53_RS01685 0.86 +2.2 398,409 + LRK53_RS01685 0.86 +2.2 398,409 + LRK53_RS01685 0.86 -0.5 398,410 - LRK53_RS01685 0.87 -1.1 398,410 - LRK53_RS01685 0.87 -1.4 398,410 - LRK53_RS01685 0.87 +0.2 398,410 - LRK53_RS01685 0.87 -0.3 398,410 - LRK53_RS01685 0.87 +1.8 398,410 - LRK53_RS01685 0.87 +3.1 398,487 + +0.7 398,487 + -0.4 398,487 + -0.0 398,487 + +0.4 398,487 + -0.4 398,487 + +0.5 398,487 + +0.5 398,487 + +0.9 398,487 + -1.4 398,487 + +0.3 398,487 + -1.6 398,487 + +0.1 398,487 + +0.6 398,487 + -1.1 398,487 + +2.2 398,487 + -0.1 398,487 + +2.2 398,487 + -1.3 398,488 - -1.8 398,488 - -0.2 398,488 - -1.0 398,488 - +1.9 398,488 - -2.6 398,488 - +0.8 398,488 - -0.1 398,488 - -0.8 398,649 + +0.9 398,649 + +0.3 398,650 - -0.8 398,650 - -1.4 398,650 - +0.3 398,695 - -0.6 398,695 - +0.2 398,703 + +1.0 398,703 + -1.1 398,703 + -1.1 398,703 + +0.9 398,703 + +0.2 398,703 + -0.1 398,703 + -1.1 398,704 - -0.6 398,704 - +0.7 398,704 - -0.4 398,704 - -0.2 398,704 - -0.7 398,704 - -0.2 398,704 - +1.8 398,704 - +0.7 398,704 - +0.2 398,704 - +0.6 398,704 - -0.5 398,704 - -1.4 398,754 + LRK53_RS01690 0.11 -0.7 398,754 + LRK53_RS01690 0.11 -1.0 398,754 + LRK53_RS01690 0.11 +1.0 398,754 + LRK53_RS01690 0.11 -0.2 398,754 + LRK53_RS01690 0.11 +0.2 398,754 + LRK53_RS01690 0.11 -0.4 398,754 + LRK53_RS01690 0.11 -0.2 398,754 + LRK53_RS01690 0.11 +0.7 398,754 + LRK53_RS01690 0.11 -1.6 398,754 + LRK53_RS01690 0.11 -0.8 398,754 + LRK53_RS01690 0.11 -0.8 398,755 - LRK53_RS01690 0.11 -0.4 398,755 - LRK53_RS01690 0.11 +0.3 398,755 - LRK53_RS01690 0.11 +1.2 398,821 + LRK53_RS01690 0.23 -0.1 398,821 + LRK53_RS01690 0.23 +2.5 398,821 + LRK53_RS01690 0.23 -1.4 398,822 - LRK53_RS01690 0.23 +0.2 398,822 - LRK53_RS01690 0.23 +0.9 398,822 - LRK53_RS01690 0.23 -0.3 398,822 - LRK53_RS01690 0.23 -0.3 398,822 - LRK53_RS01690 0.23 -0.1 398,822 - LRK53_RS01690 0.23 +1.0 399,015 + LRK53_RS01690 0.57 +0.2 399,015 + LRK53_RS01690 0.57 -1.6 399,016 - LRK53_RS01690 0.58 -0.7 399,016 - LRK53_RS01690 0.58 -1.6 399,016 - LRK53_RS01690 0.58 -0.4 399,016 - LRK53_RS01690 0.58 -1.6 399,016 - LRK53_RS01690 0.58 -0.9 399,016 - LRK53_RS01690 0.58 -0.5 399,016 - LRK53_RS01690 0.58 -1.0 399,016 - LRK53_RS01690 0.58 -1.4 399,024 + LRK53_RS01690 0.59 -1.3 399,024 + LRK53_RS01690 0.59 -0.9 399,024 + LRK53_RS01690 0.59 -0.2 399,024 + LRK53_RS01690 0.59 -1.4 399,024 + LRK53_RS01690 0.59 +0.2 399,024 + LRK53_RS01690 0.59 -0.9 399,024 + LRK53_RS01690 0.59 +0.2 399,024 + LRK53_RS01690 0.59 -0.6 399,024 + LRK53_RS01690 0.59 +0.8 399,024 + LRK53_RS01690 0.59 -0.8 399,024 + LRK53_RS01690 0.59 -1.2 399,024 + LRK53_RS01690 0.59 -0.2 399,024 + LRK53_RS01690 0.59 +0.2 399,024 + LRK53_RS01690 0.59 -0.5 399,024 + LRK53_RS01690 0.59 +2.2 399,025 - LRK53_RS01690 0.59 -2.3 399,025 - LRK53_RS01690 0.59 -0.6 399,025 - LRK53_RS01690 0.59 -0.1 399,025 - LRK53_RS01690 0.59 +0.2 399,025 - LRK53_RS01690 0.59 +0.4 399,025 - LRK53_RS01690 0.59 -1.0 399,025 - LRK53_RS01690 0.59 -0.4 399,025 - LRK53_RS01690 0.59 +0.8 399,025 - LRK53_RS01690 0.59 -0.1 399,025 - LRK53_RS01690 0.59 -0.7 399,025 - LRK53_RS01690 0.59 -0.0 399,025 - LRK53_RS01690 0.59 -0.4 399,025 - LRK53_RS01690 0.59 +0.9 399,025 - LRK53_RS01690 0.59 -0.9 399,025 - LRK53_RS01690 0.59 -0.8 399,025 - LRK53_RS01690 0.59 +2.2 399,025 - LRK53_RS01690 0.59 -1.1 399,033 + LRK53_RS01690 0.61 -0.5 399,117 + LRK53_RS01690 0.76 +0.4 399,117 + LRK53_RS01690 0.76 -0.4 399,118 - LRK53_RS01690 0.76 +0.4 399,118 - LRK53_RS01690 0.76 -0.2 399,201 + +0.4 399,201 + +0.2 399,202 - +1.6 399,202 - -0.0 399,225 + -0.3 399,225 + +0.2 399,225 + -0.6 399,225 + -0.1 399,225 + -1.6 399,225 + +1.2 399,226 - +0.0 399,226 - +1.2 399,226 - +0.7 399,226 - +1.4 399,306 + +0.7 399,306 + -0.6 399,307 - -0.1 399,307 - +0.4 399,307 - -1.1 399,307 - -1.1 399,307 - -0.3 399,307 - -0.6 399,401 + LRK53_RS01695 0.27 -2.4 399,479 + LRK53_RS01695 0.64 -1.2 399,479 + LRK53_RS01695 0.64 +0.2 399,479 + LRK53_RS01695 0.64 +1.4 399,479 + LRK53_RS01695 0.64 -0.6 399,479 + LRK53_RS01695 0.64 +1.4 399,480 - LRK53_RS01695 0.65 -0.0 399,480 - LRK53_RS01695 0.65 -1.8 399,480 - LRK53_RS01695 0.65 -0.4 399,480 - LRK53_RS01695 0.65 -1.8 399,480 - LRK53_RS01695 0.65 -0.6 399,480 - LRK53_RS01695 0.65 -0.4 399,480 - LRK53_RS01695 0.65 +0.6 399,480 - LRK53_RS01695 0.65 -3.7 399,480 - LRK53_RS01695 0.65 -0.8 399,521 + LRK53_RS01695 0.84 -2.1 399,521 + LRK53_RS01695 0.84 +1.9 399,522 - LRK53_RS01695 0.85 -0.1 399,522 - LRK53_RS01695 0.85 -1.1 399,522 - LRK53_RS01695 0.85 -3.9 399,522 - LRK53_RS01695 0.85 -1.1 399,536 + +0.0 399,536 + +1.4 399,536 + -1.0 399,536 + -0.2 399,536 + -0.5 399,536 + -0.4 399,536 + +0.2 399,536 + -0.0 399,536 + +0.6 399,536 + -0.4 399,536 + +0.9 399,536 + +0.3 399,536 + +0.2 399,536 + +0.2 399,536 + +1.2 399,537 - +1.8 399,537 - +0.6 399,537 - -1.1 399,537 - -0.0 399,537 - -0.8 399,537 - -0.7 399,537 - -0.2 399,537 - -0.4 399,537 - -0.8 399,537 - +0.2 399,537 - +1.2 399,537 - +0.2 399,537 - -0.4 399,537 - -0.8 400,022 + LRK53_RS01700 0.35 +1.2 400,098 - LRK53_RS01700 0.41 +1.2 400,460 + LRK53_RS01700 0.73 +0.2 400,461 - LRK53_RS01700 0.73 -0.8
Or see this region's nucleotide sequence