Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01415 and LRK53_RS01420 are separated by 519 nucleotides LRK53_RS01420 and LRK53_RS01425 are separated by 32 nucleotides LRK53_RS01425 and LRK53_RS01430 overlap by 8 nucleotides LRK53_RS01430 and LRK53_RS01435 are separated by 20 nucleotides
LRK53_RS01415: LRK53_RS01415 - fimbrial protein, at 343,247 to 343,786
_RS01415
LRK53_RS01420: LRK53_RS01420 - hypothetical protein, at 344,306 to 344,689
_RS01420
LRK53_RS01425: LRK53_RS01425 - hypothetical protein, at 344,722 to 345,126
_RS01425
LRK53_RS01430: LRK53_RS01430 - helix-turn-helix transcriptional regulator, at 345,119 to 345,319
_RS01430
LRK53_RS01435: LRK53_RS01435 - alpha/beta hydrolase, at 345,340 to 346,893
_RS01435
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.803 kb on + strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.804 kb on - strand at 343.812 kb on - strand at 343.932 kb on + strand at 343.932 kb on + strand at 343.932 kb on + strand at 343.933 kb on - strand at 343.933 kb on - strand at 343.933 kb on - strand at 343.933 kb on - strand at 343.933 kb on - strand at 343.933 kb on - strand at 343.979 kb on + strand at 343.979 kb on + strand at 343.979 kb on + strand at 343.979 kb on + strand at 343.979 kb on + strand at 343.979 kb on + strand at 343.980 kb on - strand at 343.980 kb on - strand at 343.980 kb on - strand at 343.980 kb on - strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.022 kb on + strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.023 kb on - strand at 344.050 kb on + strand at 344.051 kb on - strand at 344.051 kb on - strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.098 kb on + strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.099 kb on - strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.107 kb on + strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.108 kb on - strand at 344.136 kb on + strand at 344.136 kb on + strand at 344.136 kb on + strand at 344.136 kb on + strand at 344.178 kb on + strand at 344.178 kb on + strand at 344.178 kb on + strand at 344.179 kb on - strand at 344.179 kb on - strand at 344.212 kb on + strand at 344.212 kb on + strand at 344.212 kb on + strand at 344.213 kb on - strand at 344.264 kb on + strand at 344.264 kb on + strand at 344.264 kb on + strand at 344.265 kb on - strand at 344.265 kb on - strand at 344.265 kb on - strand at 344.265 kb on - strand at 344.305 kb on + strand at 344.305 kb on + strand at 344.306 kb on - strand at 344.306 kb on - strand at 344.306 kb on - strand at 344.317 kb on + strand at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.363 kb on + strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.364 kb on - strand, within LRK53_RS01420 at 344.443 kb on - strand, within LRK53_RS01420 at 344.453 kb on + strand, within LRK53_RS01420 at 344.453 kb on + strand, within LRK53_RS01420 at 344.493 kb on + strand, within LRK53_RS01420 at 344.493 kb on + strand, within LRK53_RS01420 at 344.493 kb on + strand, within LRK53_RS01420 at 344.494 kb on - strand, within LRK53_RS01420 at 344.586 kb on + strand, within LRK53_RS01420 at 344.586 kb on + strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.587 kb on - strand, within LRK53_RS01420 at 344.596 kb on + strand, within LRK53_RS01420 at 344.596 kb on + strand, within LRK53_RS01420 at 344.596 kb on + strand, within LRK53_RS01420 at 344.596 kb on + strand, within LRK53_RS01420 at 344.596 kb on + strand, within LRK53_RS01420 at 344.597 kb on - strand, within LRK53_RS01420 at 344.708 kb on + strand at 344.708 kb on + strand at 344.708 kb on + strand at 344.708 kb on + strand at 344.708 kb on + strand at 344.709 kb on - strand at 344.736 kb on + strand at 344.743 kb on + strand at 344.743 kb on + strand at 344.743 kb on + strand at 344.743 kb on + strand at 344.744 kb on - strand at 344.744 kb on - strand at 344.744 kb on - strand at 344.744 kb on - strand at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.776 kb on + strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.777 kb on - strand, within LRK53_RS01425 at 344.954 kb on + strand, within LRK53_RS01425 at 344.954 kb on + strand, within LRK53_RS01425 at 344.954 kb on + strand, within LRK53_RS01425 at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.230 kb on + strand, within LRK53_RS01430 at 345.926 kb on - strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.928 kb on + strand, within LRK53_RS01435 at 345.929 kb on - strand, within LRK53_RS01435 at 345.929 kb on - strand, within LRK53_RS01435 at 345.929 kb on - strand, within LRK53_RS01435 at 345.929 kb on - strand, within LRK53_RS01435 at 346.013 kb on - strand, within LRK53_RS01435 at 346.036 kb on + strand, within LRK53_RS01435
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 343,803 + +0.4 343,803 + -0.8 343,803 + -1.8 343,803 + -0.6 343,803 + -1.5 343,803 + -2.0 343,803 + -3.1 343,803 + -0.6 343,803 + +1.4 343,803 + -0.5 343,803 + -1.4 343,803 + +0.4 343,803 + -2.7 343,803 + -1.3 343,804 - -1.1 343,804 - +0.6 343,804 - -1.2 343,804 - -0.8 343,804 - +1.0 343,804 - +1.5 343,804 - -0.7 343,804 - +1.0 343,804 - -0.6 343,804 - -0.1 343,804 - +0.0 343,804 - +0.2 343,804 - +0.3 343,804 - -2.4 343,812 - +0.3 343,932 + -0.6 343,932 + -1.0 343,932 + -1.1 343,933 - +0.0 343,933 - -2.0 343,933 - -0.3 343,933 - -1.3 343,933 - -1.2 343,933 - -2.0 343,979 + +1.0 343,979 + -0.3 343,979 + +0.0 343,979 + -1.8 343,979 + -0.4 343,979 + -1.0 343,980 - -0.8 343,980 - +0.0 343,980 - -0.8 343,980 - -1.3 344,022 + +0.4 344,022 + -2.7 344,022 + -1.0 344,022 + -0.6 344,022 + -1.7 344,022 + -0.2 344,022 + +0.2 344,022 + +1.2 344,022 + -1.6 344,022 + +0.0 344,022 + -0.4 344,023 - +1.6 344,023 - -1.3 344,023 - -1.3 344,023 - -0.6 344,023 - +0.0 344,023 - -1.3 344,023 - -1.5 344,023 - -1.6 344,023 - -1.0 344,050 + -1.1 344,051 - +0.3 344,051 - -2.6 344,098 + -1.3 344,098 + -0.5 344,098 + -0.7 344,098 + -0.1 344,098 + -0.8 344,098 + -0.3 344,098 + +2.0 344,098 + +0.4 344,098 + -0.7 344,098 + -0.7 344,098 + +0.8 344,098 + -0.3 344,098 + +0.0 344,098 + -0.2 344,098 + +0.0 344,098 + +1.0 344,098 + -0.2 344,098 + +0.0 344,098 + +1.0 344,098 + -0.8 344,098 + -0.6 344,099 - +0.0 344,099 - -1.0 344,099 - +0.1 344,099 - -0.2 344,099 - -1.0 344,099 - -0.4 344,099 - -1.8 344,099 - -2.5 344,107 + -1.8 344,107 + +0.0 344,107 + +0.8 344,107 + -0.4 344,107 + -3.0 344,107 + +1.0 344,107 + -0.9 344,107 + -1.2 344,107 + -0.6 344,107 + -0.6 344,107 + -0.6 344,107 + -1.1 344,107 + +0.2 344,107 + +1.0 344,108 - -2.0 344,108 - +1.0 344,108 - +0.7 344,108 - -1.3 344,108 - +0.8 344,108 - +1.0 344,108 - -0.8 344,108 - -0.3 344,108 - -0.7 344,108 - -1.2 344,108 - -1.0 344,108 - +3.0 344,136 + -0.2 344,136 + -1.1 344,136 + -1.1 344,136 + +0.6 344,178 + -1.0 344,178 + +1.0 344,178 + -2.3 344,179 - -1.3 344,179 - +3.0 344,212 + -0.4 344,212 + +0.3 344,212 + -1.3 344,213 - -1.2 344,264 + +0.0 344,264 + -1.3 344,264 + +0.8 344,265 - -0.8 344,265 - -1.6 344,265 - -0.6 344,265 - -0.4 344,305 + -1.8 344,305 + +1.2 344,306 - +0.8 344,306 - -0.4 344,306 - -1.2 344,317 + -2.3 344,363 + LRK53_RS01420 0.15 -0.1 344,363 + LRK53_RS01420 0.15 -1.4 344,363 + LRK53_RS01420 0.15 -1.0 344,363 + LRK53_RS01420 0.15 -0.1 344,363 + LRK53_RS01420 0.15 +1.0 344,363 + LRK53_RS01420 0.15 -1.0 344,363 + LRK53_RS01420 0.15 -0.6 344,363 + LRK53_RS01420 0.15 +1.6 344,363 + LRK53_RS01420 0.15 -1.3 344,363 + LRK53_RS01420 0.15 +0.1 344,363 + LRK53_RS01420 0.15 -0.2 344,363 + LRK53_RS01420 0.15 -1.6 344,363 + LRK53_RS01420 0.15 -1.2 344,363 + LRK53_RS01420 0.15 +0.0 344,363 + LRK53_RS01420 0.15 +1.0 344,363 + LRK53_RS01420 0.15 +2.0 344,363 + LRK53_RS01420 0.15 -1.2 344,363 + LRK53_RS01420 0.15 -0.1 344,363 + LRK53_RS01420 0.15 -1.9 344,363 + LRK53_RS01420 0.15 -0.4 344,363 + LRK53_RS01420 0.15 +0.8 344,364 - LRK53_RS01420 0.15 -0.1 344,364 - LRK53_RS01420 0.15 -1.4 344,364 - LRK53_RS01420 0.15 +1.0 344,364 - LRK53_RS01420 0.15 +2.6 344,364 - LRK53_RS01420 0.15 -3.1 344,364 - LRK53_RS01420 0.15 -0.4 344,364 - LRK53_RS01420 0.15 +1.0 344,364 - LRK53_RS01420 0.15 -1.3 344,364 - LRK53_RS01420 0.15 +0.0 344,364 - LRK53_RS01420 0.15 -2.4 344,364 - LRK53_RS01420 0.15 -1.3 344,364 - LRK53_RS01420 0.15 -0.2 344,364 - LRK53_RS01420 0.15 -0.7 344,364 - LRK53_RS01420 0.15 -0.4 344,364 - LRK53_RS01420 0.15 -1.0 344,364 - LRK53_RS01420 0.15 +1.0 344,364 - LRK53_RS01420 0.15 -0.4 344,364 - LRK53_RS01420 0.15 +0.2 344,443 - LRK53_RS01420 0.36 -0.6 344,453 + LRK53_RS01420 0.38 -0.3 344,453 + LRK53_RS01420 0.38 -0.3 344,493 + LRK53_RS01420 0.49 +1.0 344,493 + LRK53_RS01420 0.49 -0.7 344,493 + LRK53_RS01420 0.49 -0.3 344,494 - LRK53_RS01420 0.49 -0.6 344,586 + LRK53_RS01420 0.73 +0.0 344,586 + LRK53_RS01420 0.73 +0.0 344,587 - LRK53_RS01420 0.73 +0.4 344,587 - LRK53_RS01420 0.73 +0.4 344,587 - LRK53_RS01420 0.73 -0.6 344,587 - LRK53_RS01420 0.73 +0.7 344,587 - LRK53_RS01420 0.73 +0.7 344,587 - LRK53_RS01420 0.73 -0.7 344,596 + LRK53_RS01420 0.76 -0.1 344,596 + LRK53_RS01420 0.76 -0.8 344,596 + LRK53_RS01420 0.76 +3.0 344,596 + LRK53_RS01420 0.76 +2.0 344,596 + LRK53_RS01420 0.76 -0.4 344,597 - LRK53_RS01420 0.76 +0.7 344,708 + -2.1 344,708 + -0.2 344,708 + -0.2 344,708 + -1.8 344,708 + +1.6 344,709 - -1.1 344,736 + +0.2 344,743 + -1.1 344,743 + +0.8 344,743 + -2.3 344,743 + +0.4 344,744 - -0.7 344,744 - -1.1 344,744 - +0.0 344,744 - +0.4 344,776 + LRK53_RS01425 0.13 +2.0 344,776 + LRK53_RS01425 0.13 -0.6 344,776 + LRK53_RS01425 0.13 +0.1 344,776 + LRK53_RS01425 0.13 -0.4 344,776 + LRK53_RS01425 0.13 -0.1 344,776 + LRK53_RS01425 0.13 -0.5 344,776 + LRK53_RS01425 0.13 +0.4 344,776 + LRK53_RS01425 0.13 -0.4 344,776 + LRK53_RS01425 0.13 +0.0 344,776 + LRK53_RS01425 0.13 +0.4 344,776 + LRK53_RS01425 0.13 -1.0 344,776 + LRK53_RS01425 0.13 +1.0 344,776 + LRK53_RS01425 0.13 -0.6 344,776 + LRK53_RS01425 0.13 +0.8 344,776 + LRK53_RS01425 0.13 +1.2 344,776 + LRK53_RS01425 0.13 +1.0 344,777 - LRK53_RS01425 0.14 -0.3 344,777 - LRK53_RS01425 0.14 +2.6 344,777 - LRK53_RS01425 0.14 +2.0 344,777 - LRK53_RS01425 0.14 -0.9 344,777 - LRK53_RS01425 0.14 -1.6 344,777 - LRK53_RS01425 0.14 -1.3 344,777 - LRK53_RS01425 0.14 -0.6 344,777 - LRK53_RS01425 0.14 +2.0 344,777 - LRK53_RS01425 0.14 -0.1 344,777 - LRK53_RS01425 0.14 -0.8 344,777 - LRK53_RS01425 0.14 +0.3 344,777 - LRK53_RS01425 0.14 -0.3 344,777 - LRK53_RS01425 0.14 -0.8 344,777 - LRK53_RS01425 0.14 +0.4 344,777 - LRK53_RS01425 0.14 +0.5 344,777 - LRK53_RS01425 0.14 +1.0 344,777 - LRK53_RS01425 0.14 +0.0 344,777 - LRK53_RS01425 0.14 +3.8 344,777 - LRK53_RS01425 0.14 -2.1 344,777 - LRK53_RS01425 0.14 -1.6 344,777 - LRK53_RS01425 0.14 -0.5 344,777 - LRK53_RS01425 0.14 +0.7 344,954 + LRK53_RS01425 0.57 -0.8 344,954 + LRK53_RS01425 0.57 -0.5 344,954 + LRK53_RS01425 0.57 -0.6 345,124 + +0.0 345,124 + +1.0 345,124 + -3.2 345,124 + -1.2 345,124 + -0.6 345,124 + -1.6 345,125 - -1.1 345,125 - +0.2 345,230 + LRK53_RS01430 0.55 -0.3 345,926 - LRK53_RS01435 0.38 +1.0 345,928 + LRK53_RS01435 0.38 +1.0 345,928 + LRK53_RS01435 0.38 +1.0 345,928 + LRK53_RS01435 0.38 -0.6 345,928 + LRK53_RS01435 0.38 +0.0 345,928 + LRK53_RS01435 0.38 -2.0 345,928 + LRK53_RS01435 0.38 -1.1 345,929 - LRK53_RS01435 0.38 -1.6 345,929 - LRK53_RS01435 0.38 +2.0 345,929 - LRK53_RS01435 0.38 +0.0 345,929 - LRK53_RS01435 0.38 -0.2 346,013 - LRK53_RS01435 0.43 +2.8 346,036 + LRK53_RS01435 0.45 +1.0
Or see this region's nucleotide sequence