Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00920 and LRK53_RS00925 overlap by 4 nucleotides LRK53_RS00925 and LRK53_RS00930 overlap by 4 nucleotides LRK53_RS00930 and LRK53_RS00935 overlap by 4 nucleotides LRK53_RS00935 and LRK53_RS00940 are separated by 151 nucleotides LRK53_RS00940 and LRK53_RS00945 are separated by 383 nucleotides
LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099
_RS00920
LRK53_RS00925: LRK53_RS00925 - Na+/H+ antiporter subunit E, at 235,096 to 235,584
_RS00925
LRK53_RS00930: LRK53_RS00930 - K+/H+ antiporter subunit F, at 235,581 to 235,862
_RS00930
LRK53_RS00935: LRK53_RS00935 - monovalent cation/H(+) antiporter subunit G, at 235,859 to 236,212
_RS00935
LRK53_RS00940: LRK53_RS00940 - hypothetical protein, at 236,364 to 236,561
_RS00940
LRK53_RS00945: LRK53_RS00945 - helix-turn-helix domain-containing protein, at 236,945 to 238,063
_RS00945
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 235.058 kb on + strand at 235.058 kb on + strand at 235.058 kb on + strand at 235.059 kb on - strand at 235.059 kb on - strand at 235.267 kb on + strand, within LRK53_RS00925 at 235.408 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.553 kb on - strand at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.714 kb on - strand, within LRK53_RS00930 at 235.714 kb on - strand, within LRK53_RS00930 at 235.770 kb on + strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.909 kb on - strand, within LRK53_RS00935 at 235.917 kb on + strand, within LRK53_RS00935 at 235.918 kb on - strand, within LRK53_RS00935 at 235.976 kb on + strand, within LRK53_RS00935 at 236.081 kb on + strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935 at 236.142 kb on + strand, within LRK53_RS00935 at 236.156 kb on + strand, within LRK53_RS00935 at 236.156 kb on + strand, within LRK53_RS00935 at 236.157 kb on - strand, within LRK53_RS00935 at 236.210 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.468 kb on - strand, within LRK53_RS00940 at 236.506 kb on + strand, within LRK53_RS00940 at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.898 kb on + strand at 236.899 kb on - strand at 236.899 kb on - strand at 236.899 kb on - strand at 236.916 kb on + strand at 236.916 kb on + strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.943 kb on + strand at 236.944 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 237.002 kb on + strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.112 kb on + strand, within LRK53_RS00945 at 237.113 kb on - strand, within LRK53_RS00945 at 237.113 kb on - strand, within LRK53_RS00945 at 237.126 kb on - strand, within LRK53_RS00945 at 237.126 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 234,933 + LRK53_RS00920 0.90 -0.2 234,933 + LRK53_RS00920 0.90 -1.4 234,933 + LRK53_RS00920 0.90 +2.9 234,933 + LRK53_RS00920 0.90 -0.3 234,933 + LRK53_RS00920 0.90 +0.1 234,934 - LRK53_RS00920 0.90 +0.6 234,934 - LRK53_RS00920 0.90 +0.3 234,934 - LRK53_RS00920 0.90 +2.1 234,934 - LRK53_RS00920 0.90 -1.1 234,934 - LRK53_RS00920 0.90 -2.8 235,058 + +1.3 235,058 + +3.3 235,058 + +0.1 235,059 - +0.3 235,059 - +1.9 235,267 + LRK53_RS00925 0.35 +1.3 235,408 + LRK53_RS00925 0.64 +0.7 235,468 + LRK53_RS00925 0.76 -1.6 235,468 + LRK53_RS00925 0.76 -2.7 235,468 + LRK53_RS00925 0.76 +1.3 235,468 + LRK53_RS00925 0.76 -0.2 235,468 + LRK53_RS00925 0.76 +0.9 235,468 + LRK53_RS00925 0.76 -1.3 235,469 - LRK53_RS00925 0.76 -1.2 235,469 - LRK53_RS00925 0.76 +1.3 235,469 - LRK53_RS00925 0.76 +0.0 235,469 - LRK53_RS00925 0.76 -0.7 235,502 + LRK53_RS00925 0.83 -1.1 235,502 + LRK53_RS00925 0.83 -2.8 235,502 + LRK53_RS00925 0.83 +0.3 235,502 + LRK53_RS00925 0.83 +1.3 235,502 + LRK53_RS00925 0.83 +0.4 235,502 + LRK53_RS00925 0.83 +1.3 235,503 - LRK53_RS00925 0.83 -2.1 235,503 - LRK53_RS00925 0.83 -0.3 235,503 - LRK53_RS00925 0.83 -0.1 235,503 - LRK53_RS00925 0.83 +0.3 235,503 - LRK53_RS00925 0.83 -0.3 235,503 - LRK53_RS00925 0.83 +0.3 235,503 - LRK53_RS00925 0.83 +0.5 235,503 - LRK53_RS00925 0.83 -0.5 235,503 - LRK53_RS00925 0.83 -1.5 235,503 - LRK53_RS00925 0.83 -0.5 235,503 - LRK53_RS00925 0.83 +1.3 235,503 - LRK53_RS00925 0.83 -0.7 235,503 - LRK53_RS00925 0.83 +0.9 235,503 - LRK53_RS00925 0.83 +1.3 235,553 - -0.2 235,713 + LRK53_RS00930 0.47 +1.3 235,713 + LRK53_RS00930 0.47 +1.3 235,713 + LRK53_RS00930 0.47 -0.6 235,713 + LRK53_RS00930 0.47 -1.9 235,713 + LRK53_RS00930 0.47 +0.7 235,714 - LRK53_RS00930 0.47 -0.5 235,714 - LRK53_RS00930 0.47 +1.9 235,770 + LRK53_RS00930 0.67 +1.6 235,771 - LRK53_RS00930 0.67 -0.1 235,771 - LRK53_RS00930 0.67 -1.6 235,771 - LRK53_RS00930 0.67 +0.0 235,909 - LRK53_RS00935 0.14 -1.3 235,917 + LRK53_RS00935 0.16 -2.3 235,918 - LRK53_RS00935 0.17 -0.2 235,976 + LRK53_RS00935 0.33 -0.1 236,081 + LRK53_RS00935 0.63 -3.1 236,082 - LRK53_RS00935 0.63 -1.7 236,082 - LRK53_RS00935 0.63 +0.9 236,142 + LRK53_RS00935 0.80 +1.6 236,156 + LRK53_RS00935 0.84 -0.5 236,156 + LRK53_RS00935 0.84 -2.0 236,157 - LRK53_RS00935 0.84 -1.3 236,210 + -0.5 236,280 + -0.9 236,280 + +0.0 236,280 + -0.3 236,281 - -0.4 236,281 - -0.3 236,281 - +1.1 236,281 - -0.7 236,281 - +0.1 236,281 - -0.5 236,353 + +1.1 236,353 + -1.3 236,353 + -2.3 236,353 + -0.7 236,354 - +0.5 236,354 - -2.1 236,354 - +0.2 236,354 - +1.3 236,354 - +1.3 236,468 - LRK53_RS00940 0.53 -0.7 236,506 + LRK53_RS00940 0.72 -0.3 236,698 - +0.7 236,698 - +1.3 236,698 - -1.1 236,698 - +1.3 236,698 - -0.4 236,750 + +0.5 236,750 + +1.3 236,750 + -0.1 236,750 + +1.3 236,750 + -1.3 236,750 + -0.9 236,750 + -3.4 236,750 + -0.3 236,750 + +0.3 236,751 - -0.5 236,751 - -1.2 236,751 - +1.5 236,751 - +0.4 236,751 - -0.5 236,751 - -3.3 236,751 - -0.5 236,751 - +0.0 236,751 - +0.3 236,751 - +2.3 236,751 - -2.2 236,751 - -0.4 236,751 - +1.7 236,751 - +0.3 236,898 + -1.1 236,899 - +1.3 236,899 - -1.9 236,899 - +1.6 236,916 + -0.3 236,916 + +1.3 236,917 - +0.3 236,917 - +0.5 236,917 - +2.0 236,917 - -0.2 236,917 - +1.3 236,917 - -0.7 236,943 + -1.0 236,944 - -0.1 236,979 - +0.7 236,979 - +0.8 236,979 - -1.1 236,979 - -0.2 236,979 - +0.9 236,979 - +1.7 237,002 + -0.7 237,003 - -0.6 237,003 - -0.9 237,003 - -1.1 237,003 - -0.9 237,003 - +2.4 237,003 - -0.5 237,003 - -1.1 237,003 - -2.4 237,003 - -0.2 237,054 - +0.0 237,054 - -1.2 237,054 - -0.1 237,054 - +1.3 237,054 - +2.3 237,054 - -0.4 237,054 - -1.5 237,054 - -1.5 237,054 - -0.7 237,054 - -0.6 237,054 - -1.7 237,054 - -1.3 237,054 - -0.7 237,054 - +0.3 237,054 - -1.3 237,054 - -1.5 237,054 - -0.6 237,054 - +2.3 237,112 + LRK53_RS00945 0.15 -1.9 237,113 - LRK53_RS00945 0.15 -2.4 237,113 - LRK53_RS00945 0.15 -1.3 237,126 - LRK53_RS00945 0.16 -1.0 237,126 - LRK53_RS00945 0.16 +0.5 237,207 - LRK53_RS00945 0.23 -1.5 237,207 - LRK53_RS00945 0.23 +2.3 237,207 - LRK53_RS00945 0.23 -0.7 237,207 - LRK53_RS00945 0.23 -0.1 237,207 - LRK53_RS00945 0.23 -0.7
Or see this region's nucleotide sequence