Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00830 and LRK53_RS00835 are separated by 156 nucleotides LRK53_RS00835 and LRK53_RS00840 are separated by 23 nucleotides
LRK53_RS00830: LRK53_RS00830 - heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein, at 198,186 to 199,247
_RS00830
LRK53_RS00835: LRK53_RS00835 - ATP-dependent DNA helicase, at 199,404 to 200,900
_RS00835
LRK53_RS00840: LRK53_RS00840 - IS110 family transposase, at 200,924 to 201,946
_RS00840
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.573 kb on + strand, within LRK53_RS00830 at 198.573 kb on + strand, within LRK53_RS00830 at 198.573 kb on + strand, within LRK53_RS00830 at 198.573 kb on + strand, within LRK53_RS00830 at 198.573 kb on + strand, within LRK53_RS00830 at 198.574 kb on - strand, within LRK53_RS00830 at 198.574 kb on - strand, within LRK53_RS00830 at 198.574 kb on - strand, within LRK53_RS00830 at 198.574 kb on - strand, within LRK53_RS00830 at 198.575 kb on + strand, within LRK53_RS00830 at 198.575 kb on + strand, within LRK53_RS00830 at 198.575 kb on + strand, within LRK53_RS00830 at 198.576 kb on - strand, within LRK53_RS00830 at 198.576 kb on - strand, within LRK53_RS00830 at 198.576 kb on - strand, within LRK53_RS00830 at 199.047 kb on + strand, within LRK53_RS00830 at 199.047 kb on + strand, within LRK53_RS00830 at 199.048 kb on - strand, within LRK53_RS00830 at 199.108 kb on - strand, within LRK53_RS00830 at 199.152 kb on + strand at 199.152 kb on + strand at 199.153 kb on - strand at 199.153 kb on - strand at 199.153 kb on - strand at 199.153 kb on - strand at 199.153 kb on - strand at 199.153 kb on - strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.549 kb on + strand at 199.551 kb on + strand at 199.551 kb on + strand at 199.551 kb on + strand at 199.551 kb on + strand at 199.551 kb on + strand at 199.552 kb on - strand at 199.552 kb on - strand at 199.552 kb on - strand at 199.552 kb on - strand at 199.552 kb on - strand at 199.775 kb on - strand, within LRK53_RS00835 at 199.842 kb on + strand, within LRK53_RS00835 at 199.842 kb on + strand, within LRK53_RS00835 at 199.843 kb on - strand, within LRK53_RS00835 at 199.843 kb on - strand, within LRK53_RS00835 at 199.843 kb on - strand, within LRK53_RS00835 at 200.365 kb on + strand, within LRK53_RS00835 at 200.365 kb on + strand, within LRK53_RS00835 at 200.365 kb on + strand, within LRK53_RS00835 at 200.365 kb on + strand, within LRK53_RS00835 at 200.423 kb on - strand, within LRK53_RS00835 at 200.423 kb on - strand, within LRK53_RS00835 at 200.569 kb on + strand, within LRK53_RS00835 at 200.569 kb on + strand, within LRK53_RS00835 at 200.650 kb on + strand, within LRK53_RS00835 at 200.650 kb on + strand, within LRK53_RS00835 at 200.650 kb on + strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.651 kb on - strand, within LRK53_RS00835 at 200.724 kb on - strand, within LRK53_RS00835 at 200.896 kb on - strand at 200.896 kb on - strand at 200.896 kb on - strand at 200.896 kb on - strand at 200.896 kb on - strand at 200.896 kb on - strand at 200.896 kb on - strand at 200.904 kb on - strand at 200.904 kb on - strand at 200.908 kb on - strand at 200.908 kb on - strand at 200.908 kb on - strand at 200.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 198,573 + LRK53_RS00830 0.36 +0.1 198,573 + LRK53_RS00830 0.36 +0.0 198,573 + LRK53_RS00830 0.36 -0.9 198,573 + LRK53_RS00830 0.36 -1.3 198,573 + LRK53_RS00830 0.36 -1.1 198,574 - LRK53_RS00830 0.37 +1.1 198,574 - LRK53_RS00830 0.37 +0.6 198,574 - LRK53_RS00830 0.37 -1.2 198,574 - LRK53_RS00830 0.37 -1.2 198,575 + LRK53_RS00830 0.37 +0.2 198,575 + LRK53_RS00830 0.37 +0.2 198,575 + LRK53_RS00830 0.37 -1.1 198,576 - LRK53_RS00830 0.37 -1.9 198,576 - LRK53_RS00830 0.37 -1.1 198,576 - LRK53_RS00830 0.37 -0.9 199,047 + LRK53_RS00830 0.81 -0.1 199,047 + LRK53_RS00830 0.81 -0.8 199,048 - LRK53_RS00830 0.81 -0.7 199,108 - LRK53_RS00830 0.87 +0.8 199,152 + +0.5 199,152 + -1.2 199,153 - +1.5 199,153 - -2.5 199,153 - +0.7 199,153 - +1.1 199,153 - +0.1 199,153 - -0.5 199,229 + -0.4 199,229 + -0.5 199,229 + +1.1 199,229 + -1.7 199,229 + -1.5 199,229 + -0.9 199,229 + -0.7 199,229 + +0.2 199,229 + -0.6 199,229 + -0.7 199,230 - +0.4 199,230 - -0.2 199,230 - -0.6 199,230 - -2.1 199,230 - +2.1 199,230 - +0.1 199,230 - -2.1 199,230 - -1.7 199,230 - -1.7 199,549 + +1.3 199,551 + +0.1 199,551 + +1.1 199,551 + -0.5 199,551 + -3.1 199,551 + -0.9 199,552 - -0.5 199,552 - -0.3 199,552 - +0.4 199,552 - -0.8 199,552 - -3.1 199,775 - LRK53_RS00835 0.25 -1.2 199,842 + LRK53_RS00835 0.29 -1.1 199,842 + LRK53_RS00835 0.29 +1.1 199,843 - LRK53_RS00835 0.29 -0.5 199,843 - LRK53_RS00835 0.29 +0.1 199,843 - LRK53_RS00835 0.29 +1.2 200,365 + LRK53_RS00835 0.64 +2.7 200,365 + LRK53_RS00835 0.64 -0.2 200,365 + LRK53_RS00835 0.64 +0.1 200,365 + LRK53_RS00835 0.64 -0.5 200,423 - LRK53_RS00835 0.68 -2.6 200,423 - LRK53_RS00835 0.68 -1.3 200,569 + LRK53_RS00835 0.78 +0.9 200,569 + LRK53_RS00835 0.78 -0.3 200,650 + LRK53_RS00835 0.83 -0.4 200,650 + LRK53_RS00835 0.83 -1.7 200,650 + LRK53_RS00835 0.83 +0.3 200,651 - LRK53_RS00835 0.83 +0.7 200,651 - LRK53_RS00835 0.83 +0.5 200,651 - LRK53_RS00835 0.83 -0.3 200,651 - LRK53_RS00835 0.83 -0.2 200,651 - LRK53_RS00835 0.83 -0.0 200,651 - LRK53_RS00835 0.83 -0.8 200,651 - LRK53_RS00835 0.83 +0.1 200,724 - LRK53_RS00835 0.88 +0.9 200,896 - +0.1 200,896 - +1.1 200,896 - -0.4 200,896 - -0.3 200,896 - -0.8 200,896 - -1.4 200,896 - -1.4 200,904 - -0.8 200,904 - -0.1 200,908 - +0.1 200,908 - +0.1 200,908 - -1.5 200,908 - -1.5
Or see this region's nucleotide sequence