Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00810

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00805 and LRK53_RS00810 are separated by 124 nucleotidesLRK53_RS00810 and LRK53_RS00815 are separated by 425 nucleotides LRK53_RS00805: LRK53_RS00805 - LacI family DNA-binding transcriptional regulator, at 188,488 to 189,537 _RS00805 LRK53_RS00810: LRK53_RS00810 - sugar MFS transporter, at 189,662 to 190,948 _RS00810 LRK53_RS00815: LRK53_RS00815 - glucokinase, at 191,374 to 192,459 _RS00815 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.862 kb on + strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.863 kb on - strand, within LRK53_RS00805at 188.864 kb on + strand, within LRK53_RS00805at 188.864 kb on + strand, within LRK53_RS00805at 188.864 kb on + strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.865 kb on - strand, within LRK53_RS00805at 188.906 kb on + strand, within LRK53_RS00805at 188.906 kb on + strand, within LRK53_RS00805at 188.907 kb on - strand, within LRK53_RS00805at 188.927 kb on + strand, within LRK53_RS00805at 188.928 kb on - strand, within LRK53_RS00805at 188.937 kb on - strand, within LRK53_RS00805at 188.937 kb on - strand, within LRK53_RS00805at 189.050 kb on + strand, within LRK53_RS00805at 189.050 kb on + strand, within LRK53_RS00805at 189.050 kb on + strand, within LRK53_RS00805at 189.050 kb on + strand, within LRK53_RS00805at 189.051 kb on - strand, within LRK53_RS00805at 189.314 kb on + strand, within LRK53_RS00805at 189.314 kb on + strand, within LRK53_RS00805at 189.314 kb on + strand, within LRK53_RS00805at 189.314 kb on + strand, within LRK53_RS00805at 189.315 kb on - strand, within LRK53_RS00805at 189.315 kb on - strand, within LRK53_RS00805at 189.315 kb on - strand, within LRK53_RS00805at 189.315 kb on - strand, within LRK53_RS00805at 189.315 kb on - strand, within LRK53_RS00805at 189.335 kb on + strand, within LRK53_RS00805at 189.335 kb on + strand, within LRK53_RS00805at 189.336 kb on - strand, within LRK53_RS00805at 189.353 kb on + strand, within LRK53_RS00805at 189.353 kb on + strand, within LRK53_RS00805at 189.487 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.629 kb on + strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.630 kb on - strandat 189.634 kb on + strandat 189.635 kb on - strandat 189.635 kb on - strandat 189.635 kb on - strandat 189.708 kb on + strandat 189.708 kb on + strandat 189.708 kb on + strandat 189.709 kb on - strandat 189.709 kb on - strandat 189.709 kb on - strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.717 kb on + strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.718 kb on - strandat 189.723 kb on + strandat 189.723 kb on + strandat 189.723 kb on + strandat 189.723 kb on + strandat 189.723 kb on + strandat 189.724 kb on - strandat 189.724 kb on - strandat 189.945 kb on + strand, within LRK53_RS00810at 189.945 kb on + strand, within LRK53_RS00810at 189.945 kb on + strand, within LRK53_RS00810at 189.946 kb on - strand, within LRK53_RS00810at 189.946 kb on - strand, within LRK53_RS00810at 189.946 kb on - strand, within LRK53_RS00810at 189.946 kb on - strand, within LRK53_RS00810at 189.946 kb on - strand, within LRK53_RS00810at 190.009 kb on - strand, within LRK53_RS00810at 190.056 kb on + strand, within LRK53_RS00810at 190.083 kb on + strand, within LRK53_RS00810at 190.083 kb on + strand, within LRK53_RS00810at 190.083 kb on + strand, within LRK53_RS00810at 190.083 kb on + strand, within LRK53_RS00810at 190.084 kb on - strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.134 kb on + strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.135 kb on - strand, within LRK53_RS00810at 190.176 kb on + strand, within LRK53_RS00810at 190.176 kb on + strand, within LRK53_RS00810at 190.176 kb on + strand, within LRK53_RS00810at 190.176 kb on + strand, within LRK53_RS00810at 190.176 kb on + strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.177 kb on - strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.344 kb on + strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.345 kb on - strand, within LRK53_RS00810at 190.557 kb on + strand, within LRK53_RS00810at 190.557 kb on + strand, within LRK53_RS00810at 190.557 kb on + strand, within LRK53_RS00810at 190.557 kb on + strand, within LRK53_RS00810at 190.758 kb on + strand, within LRK53_RS00810at 190.758 kb on + strand, within LRK53_RS00810at 190.759 kb on - strand, within LRK53_RS00810at 190.759 kb on - strand, within LRK53_RS00810at 190.759 kb on - strand, within LRK53_RS00810at 190.759 kb on - strand, within LRK53_RS00810at 190.767 kb on + strand, within LRK53_RS00810at 190.767 kb on + strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 190.768 kb on - strand, within LRK53_RS00810at 191.015 kb on + strandat 191.016 kb on - strandat 191.016 kb on - strandat 191.016 kb on - strandat 191.043 kb on + strandat 191.044 kb on - strandat 191.044 kb on - strandat 191.169 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.223 kb on + strandat 191.223 kb on + strandat 191.224 kb on - strandat 191.225 kb on + strandat 191.226 kb on - strandat 191.318 kb on + strandat 191.361 kb on - strandat 191.557 kb on + strand, within LRK53_RS00815at 191.557 kb on + strand, within LRK53_RS00815at 191.557 kb on + strand, within LRK53_RS00815at 191.557 kb on + strand, within LRK53_RS00815at 191.558 kb on - strand, within LRK53_RS00815at 191.566 kb on + strand, within LRK53_RS00815at 191.566 kb on + strand, within LRK53_RS00815at 191.690 kb on - strand, within LRK53_RS00815at 191.690 kb on - strand, within LRK53_RS00815at 191.777 kb on + strand, within LRK53_RS00815at 191.777 kb on + strand, within LRK53_RS00815at 191.778 kb on - strand, within LRK53_RS00815at 191.778 kb on - strand, within LRK53_RS00815

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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188,862 + LRK53_RS00805 0.36 +0.3
188,862 + LRK53_RS00805 0.36 -0.6
188,862 + LRK53_RS00805 0.36 -0.9
188,862 + LRK53_RS00805 0.36 +0.1
188,862 + LRK53_RS00805 0.36 +1.5
188,862 + LRK53_RS00805 0.36 -1.3
188,862 + LRK53_RS00805 0.36 +1.1
188,862 + LRK53_RS00805 0.36 -0.1
188,862 + LRK53_RS00805 0.36 -0.7
188,862 + LRK53_RS00805 0.36 -1.5
188,862 + LRK53_RS00805 0.36 -0.2
188,862 + LRK53_RS00805 0.36 -1.3
188,862 + LRK53_RS00805 0.36 -1.9
188,862 + LRK53_RS00805 0.36 -0.5
188,862 + LRK53_RS00805 0.36 -0.5
188,862 + LRK53_RS00805 0.36 -1.2
188,863 - LRK53_RS00805 0.36 -3.1
188,863 - LRK53_RS00805 0.36 +0.7
188,863 - LRK53_RS00805 0.36 -1.9
188,863 - LRK53_RS00805 0.36 -0.5
188,863 - LRK53_RS00805 0.36 +0.7
188,863 - LRK53_RS00805 0.36 -0.9
188,863 - LRK53_RS00805 0.36 -3.5
188,863 - LRK53_RS00805 0.36 -1.3
188,863 - LRK53_RS00805 0.36 -0.0
188,863 - LRK53_RS00805 0.36 +1.1
188,863 - LRK53_RS00805 0.36 -3.2
188,863 - LRK53_RS00805 0.36 -0.5
188,863 - LRK53_RS00805 0.36 -0.8
188,863 - LRK53_RS00805 0.36 +0.3
188,864 + LRK53_RS00805 0.36 -2.9
188,864 + LRK53_RS00805 0.36 -2.1
188,864 + LRK53_RS00805 0.36 -0.9
188,865 - LRK53_RS00805 0.36 -1.5
188,865 - LRK53_RS00805 0.36 -2.5
188,865 - LRK53_RS00805 0.36 +0.5
188,865 - LRK53_RS00805 0.36 +1.1
188,865 - LRK53_RS00805 0.36 -2.7
188,865 - LRK53_RS00805 0.36 -0.3
188,865 - LRK53_RS00805 0.36 +0.1
188,906 + LRK53_RS00805 0.40 -0.5
188,906 + LRK53_RS00805 0.40 -0.5
188,907 - LRK53_RS00805 0.40 +0.1
188,927 + LRK53_RS00805 0.42 +0.1
188,928 - LRK53_RS00805 0.42 +0.3
188,937 - LRK53_RS00805 0.43 +3.1
188,937 - LRK53_RS00805 0.43 -0.6
189,050 + LRK53_RS00805 0.54 -1.7
189,050 + LRK53_RS00805 0.54 +3.1
189,050 + LRK53_RS00805 0.54 -1.5
189,050 + LRK53_RS00805 0.54 +0.5
189,051 - LRK53_RS00805 0.54 -1.9
189,314 + LRK53_RS00805 0.79 -0.5
189,314 + LRK53_RS00805 0.79 -0.5
189,314 + LRK53_RS00805 0.79 -1.9
189,314 + LRK53_RS00805 0.79 -1.5
189,315 - LRK53_RS00805 0.79 -0.1
189,315 - LRK53_RS00805 0.79 -1.3
189,315 - LRK53_RS00805 0.79 +0.2
189,315 - LRK53_RS00805 0.79 +1.1
189,315 - LRK53_RS00805 0.79 -1.5
189,335 + LRK53_RS00805 0.81 -1.2
189,335 + LRK53_RS00805 0.81 -1.6
189,336 - LRK53_RS00805 0.81 +0.3
189,353 + LRK53_RS00805 0.82 +0.1
189,353 + LRK53_RS00805 0.82 -1.3
189,487 + +0.1
189,629 + -1.1
189,629 + -2.2
189,629 + +0.8
189,629 + +0.0
189,629 + +0.1
189,629 + -1.5
189,629 + -1.9
189,629 + -0.3
189,629 + +0.1
189,629 + +0.7
189,630 - -1.1
189,630 - -2.0
189,630 - +0.7
189,630 - -3.0
189,630 - +0.5
189,630 - -2.1
189,630 - -2.9
189,634 + -2.5
189,635 - -0.4
189,635 - -0.5
189,635 - -0.8
189,708 + -1.5
189,708 + -0.1
189,708 + +0.3
189,709 - -0.5
189,709 - -0.1
189,709 - -0.9
189,717 + -0.5
189,717 + +1.1
189,717 + -1.5
189,717 + -1.1
189,717 + -0.7
189,717 + -1.3
189,717 + +0.5
189,717 + -0.5
189,717 + -0.5
189,717 + +0.1
189,717 + -0.1
189,717 + -1.0
189,717 + -0.1
189,717 + +0.3
189,717 + -0.7
189,717 + +0.1
189,717 + -0.2
189,717 + -0.8
189,717 + -0.2
189,717 + -0.7
189,717 + +0.9
189,718 - +1.7
189,718 - +0.1
189,718 - -1.0
189,718 - +1.1
189,718 - +0.1
189,718 - +0.1
189,718 - +1.1
189,718 - +0.1
189,718 - +0.8
189,718 - +0.4
189,718 - -1.0
189,718 - +0.9
189,718 - -1.2
189,718 - -0.7
189,718 - -0.7
189,718 - -1.3
189,718 - -0.9
189,718 - -0.1
189,718 - -0.2
189,723 + -0.2
189,723 + -0.7
189,723 + -0.8
189,723 + -0.2
189,723 + +0.5
189,724 - -0.5
189,724 - -0.6
189,945 + LRK53_RS00810 0.22 +0.1
189,945 + LRK53_RS00810 0.22 -1.1
189,945 + LRK53_RS00810 0.22 -1.9
189,946 - LRK53_RS00810 0.22 +0.4
189,946 - LRK53_RS00810 0.22 -1.3
189,946 - LRK53_RS00810 0.22 +0.1
189,946 - LRK53_RS00810 0.22 -2.2
189,946 - LRK53_RS00810 0.22 -1.5
190,009 - LRK53_RS00810 0.27 -0.1
190,056 + LRK53_RS00810 0.31 -0.5
190,083 + LRK53_RS00810 0.33 -2.1
190,083 + LRK53_RS00810 0.33 +0.2
190,083 + LRK53_RS00810 0.33 +0.4
190,083 + LRK53_RS00810 0.33 -0.5
190,084 - LRK53_RS00810 0.33 -0.7
190,134 + LRK53_RS00810 0.37 -0.6
190,134 + LRK53_RS00810 0.37 +0.4
190,134 + LRK53_RS00810 0.37 +0.3
190,134 + LRK53_RS00810 0.37 +0.6
190,134 + LRK53_RS00810 0.37 +0.9
190,134 + LRK53_RS00810 0.37 -1.2
190,135 - LRK53_RS00810 0.37 +3.1
190,135 - LRK53_RS00810 0.37 +0.3
190,135 - LRK53_RS00810 0.37 +2.1
190,135 - LRK53_RS00810 0.37 -0.1
190,135 - LRK53_RS00810 0.37 +0.1
190,135 - LRK53_RS00810 0.37 +0.7
190,135 - LRK53_RS00810 0.37 +0.1
190,176 + LRK53_RS00810 0.40 -0.1
190,176 + LRK53_RS00810 0.40 +0.4
190,176 + LRK53_RS00810 0.40 +1.3
190,176 + LRK53_RS00810 0.40 +0.1
190,176 + LRK53_RS00810 0.40 +0.1
190,177 - LRK53_RS00810 0.40 -0.3
190,177 - LRK53_RS00810 0.40 +1.1
190,177 - LRK53_RS00810 0.40 +0.3
190,177 - LRK53_RS00810 0.40 -0.7
190,177 - LRK53_RS00810 0.40 -1.5
190,177 - LRK53_RS00810 0.40 +1.7
190,344 + LRK53_RS00810 0.53 -0.3
190,344 + LRK53_RS00810 0.53 +0.1
190,344 + LRK53_RS00810 0.53 +1.1
190,344 + LRK53_RS00810 0.53 +1.7
190,344 + LRK53_RS00810 0.53 -0.1
190,344 + LRK53_RS00810 0.53 -0.3
190,344 + LRK53_RS00810 0.53 +2.3
190,344 + LRK53_RS00810 0.53 -2.1
190,344 + LRK53_RS00810 0.53 +1.0
190,344 + LRK53_RS00810 0.53 -0.3
190,344 + LRK53_RS00810 0.53 -1.1
190,344 + LRK53_RS00810 0.53 -0.9
190,344 + LRK53_RS00810 0.53 +1.1
190,345 - LRK53_RS00810 0.53 +0.6
190,345 - LRK53_RS00810 0.53 +3.4
190,345 - LRK53_RS00810 0.53 +0.1
190,345 - LRK53_RS00810 0.53 -0.9
190,345 - LRK53_RS00810 0.53 -1.2
190,345 - LRK53_RS00810 0.53 +0.1
190,345 - LRK53_RS00810 0.53 +1.1
190,345 - LRK53_RS00810 0.53 +1.1
190,345 - LRK53_RS00810 0.53 -0.7
190,345 - LRK53_RS00810 0.53 -1.5
190,345 - LRK53_RS00810 0.53 +0.0
190,345 - LRK53_RS00810 0.53 -2.4
190,557 + LRK53_RS00810 0.70 -0.9
190,557 + LRK53_RS00810 0.70 -0.1
190,557 + LRK53_RS00810 0.70 -0.6
190,557 + LRK53_RS00810 0.70 -0.5
190,758 + LRK53_RS00810 0.85 +1.0
190,758 + LRK53_RS00810 0.85 -1.2
190,759 - LRK53_RS00810 0.85 -2.1
190,759 - LRK53_RS00810 0.85 -1.5
190,759 - LRK53_RS00810 0.85 +0.0
190,759 - LRK53_RS00810 0.85 -0.3
190,767 + LRK53_RS00810 0.86 +0.1
190,767 + LRK53_RS00810 0.86 +0.7
190,768 - LRK53_RS00810 0.86 +2.1
190,768 - LRK53_RS00810 0.86 +0.1
190,768 - LRK53_RS00810 0.86 -1.1
190,768 - LRK53_RS00810 0.86 +1.1
190,768 - LRK53_RS00810 0.86 -2.3
190,768 - LRK53_RS00810 0.86 +0.2
191,015 + -0.1
191,016 - +0.4
191,016 - -0.6
191,016 - -0.2
191,043 + +0.4
191,044 - -1.9
191,044 - -0.9
191,169 + -2.3
191,181 + -0.8
191,181 + -1.6
191,181 + -1.0
191,181 + -1.5
191,223 + -0.8
191,223 + -0.3
191,224 - +0.5
191,225 + -2.0
191,226 - -1.2
191,318 + +0.2
191,361 - +0.5
191,557 + LRK53_RS00815 0.17 -1.1
191,557 + LRK53_RS00815 0.17 -0.9
191,557 + LRK53_RS00815 0.17 -0.8
191,557 + LRK53_RS00815 0.17 -0.5
191,558 - LRK53_RS00815 0.17 +0.8
191,566 + LRK53_RS00815 0.18 -0.8
191,566 + LRK53_RS00815 0.18 -0.5
191,690 - LRK53_RS00815 0.29 -2.1
191,690 - LRK53_RS00815 0.29 +0.1
191,777 + LRK53_RS00815 0.37 -0.7
191,777 + LRK53_RS00815 0.37 +1.7
191,778 - LRK53_RS00815 0.37 +1.6
191,778 - LRK53_RS00815 0.37 -0.1

Or see this region's nucleotide sequence