Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00800 and LRK53_RS00805 are separated by 47 nucleotides LRK53_RS00805 and LRK53_RS00810 are separated by 124 nucleotides
LRK53_RS00800: LRK53_RS00800 - IS110 family transposase, at 187,529 to 188,440
_RS00800
LRK53_RS00805: LRK53_RS00805 - LacI family DNA-binding transcriptional regulator, at 188,488 to 189,537
_RS00805
LRK53_RS00810: LRK53_RS00810 - sugar MFS transporter, at 189,662 to 190,948
_RS00810
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.450 kb on + strand at 188.473 kb on + strand at 188.473 kb on + strand at 188.474 kb on - strand at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.862 kb on + strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.863 kb on - strand, within LRK53_RS00805 at 188.864 kb on + strand, within LRK53_RS00805 at 188.864 kb on + strand, within LRK53_RS00805 at 188.864 kb on + strand, within LRK53_RS00805 at 188.865 kb on - strand, within LRK53_RS00805 at 188.865 kb on - strand, within LRK53_RS00805 at 188.865 kb on - strand, within LRK53_RS00805 at 188.865 kb on - strand, within LRK53_RS00805 at 188.865 kb on - strand, within LRK53_RS00805 at 188.906 kb on + strand, within LRK53_RS00805 at 188.906 kb on + strand, within LRK53_RS00805 at 188.907 kb on - strand, within LRK53_RS00805 at 188.927 kb on + strand, within LRK53_RS00805 at 188.928 kb on - strand, within LRK53_RS00805 at 188.937 kb on - strand, within LRK53_RS00805 at 188.937 kb on - strand, within LRK53_RS00805 at 189.050 kb on + strand, within LRK53_RS00805 at 189.050 kb on + strand, within LRK53_RS00805 at 189.050 kb on + strand, within LRK53_RS00805 at 189.050 kb on + strand, within LRK53_RS00805 at 189.050 kb on + strand, within LRK53_RS00805 at 189.051 kb on - strand, within LRK53_RS00805 at 189.051 kb on - strand, within LRK53_RS00805 at 189.314 kb on + strand, within LRK53_RS00805 at 189.314 kb on + strand, within LRK53_RS00805 at 189.314 kb on + strand, within LRK53_RS00805 at 189.315 kb on - strand, within LRK53_RS00805 at 189.315 kb on - strand, within LRK53_RS00805 at 189.315 kb on - strand, within LRK53_RS00805 at 189.315 kb on - strand, within LRK53_RS00805 at 189.335 kb on + strand, within LRK53_RS00805 at 189.335 kb on + strand, within LRK53_RS00805 at 189.336 kb on - strand, within LRK53_RS00805 at 189.353 kb on + strand, within LRK53_RS00805 at 189.353 kb on + strand, within LRK53_RS00805 at 189.487 kb on + strand at 189.487 kb on + strand at 189.629 kb on + strand at 189.629 kb on + strand at 189.629 kb on + strand at 189.629 kb on + strand at 189.629 kb on + strand at 189.630 kb on - strand at 189.630 kb on - strand at 189.630 kb on - strand at 189.630 kb on - strand at 189.630 kb on - strand at 189.634 kb on + strand at 189.634 kb on + strand at 189.635 kb on - strand at 189.635 kb on - strand at 189.706 kb on - strand at 189.708 kb on + strand at 189.708 kb on + strand at 189.708 kb on + strand at 189.709 kb on - strand at 189.709 kb on - strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.717 kb on + strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.718 kb on - strand at 189.723 kb on + strand at 189.723 kb on + strand at 189.723 kb on + strand at 189.723 kb on + strand at 189.724 kb on - strand at 189.945 kb on + strand, within LRK53_RS00810 at 189.945 kb on + strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 189.946 kb on - strand, within LRK53_RS00810 at 190.008 kb on + strand, within LRK53_RS00810 at 190.056 kb on + strand, within LRK53_RS00810 at 190.083 kb on + strand, within LRK53_RS00810 at 190.083 kb on + strand, within LRK53_RS00810 at 190.083 kb on + strand, within LRK53_RS00810 at 190.084 kb on - strand, within LRK53_RS00810 at 190.084 kb on - strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.134 kb on + strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.135 kb on - strand, within LRK53_RS00810 at 190.176 kb on + strand, within LRK53_RS00810 at 190.176 kb on + strand, within LRK53_RS00810 at 190.176 kb on + strand, within LRK53_RS00810 at 190.176 kb on + strand, within LRK53_RS00810 at 190.176 kb on + strand, within LRK53_RS00810 at 190.177 kb on + strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.177 kb on - strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.344 kb on + strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810 at 190.345 kb on - strand, within LRK53_RS00810
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 188,450 + +1.9 188,450 + +1.3 188,450 + -1.1 188,450 + -0.5 188,450 + -1.3 188,450 + +1.1 188,450 + -0.9 188,450 + -2.5 188,450 + +0.4 188,450 + +0.3 188,473 + -1.5 188,473 + -0.4 188,474 - +1.6 188,862 + LRK53_RS00805 0.36 +0.3 188,862 + LRK53_RS00805 0.36 +0.4 188,862 + LRK53_RS00805 0.36 +2.9 188,862 + LRK53_RS00805 0.36 -0.5 188,862 + LRK53_RS00805 0.36 -0.7 188,862 + LRK53_RS00805 0.36 +0.3 188,862 + LRK53_RS00805 0.36 +1.7 188,862 + LRK53_RS00805 0.36 -1.1 188,862 + LRK53_RS00805 0.36 +1.3 188,862 + LRK53_RS00805 0.36 +0.0 188,862 + LRK53_RS00805 0.36 -0.6 188,862 + LRK53_RS00805 0.36 -0.3 188,862 + LRK53_RS00805 0.36 -1.4 188,862 + LRK53_RS00805 0.36 -0.0 188,862 + LRK53_RS00805 0.36 -1.2 188,862 + LRK53_RS00805 0.36 +0.3 188,862 + LRK53_RS00805 0.36 -1.7 188,862 + LRK53_RS00805 0.36 -0.3 188,862 + LRK53_RS00805 0.36 -0.3 188,862 + LRK53_RS00805 0.36 -1.0 188,863 - LRK53_RS00805 0.36 -1.3 188,863 - LRK53_RS00805 0.36 +0.9 188,863 - LRK53_RS00805 0.36 -1.7 188,863 - LRK53_RS00805 0.36 -0.4 188,863 - LRK53_RS00805 0.36 +0.9 188,863 - LRK53_RS00805 0.36 -0.7 188,863 - LRK53_RS00805 0.36 -3.4 188,863 - LRK53_RS00805 0.36 -1.1 188,863 - LRK53_RS00805 0.36 +1.3 188,863 - LRK53_RS00805 0.36 -3.1 188,863 - LRK53_RS00805 0.36 -0.3 188,863 - LRK53_RS00805 0.36 -0.6 188,863 - LRK53_RS00805 0.36 +0.4 188,864 + LRK53_RS00805 0.36 -2.7 188,864 + LRK53_RS00805 0.36 -1.9 188,864 + LRK53_RS00805 0.36 -0.7 188,865 - LRK53_RS00805 0.36 -1.4 188,865 - LRK53_RS00805 0.36 -2.4 188,865 - LRK53_RS00805 0.36 +0.7 188,865 - LRK53_RS00805 0.36 -2.5 188,865 - LRK53_RS00805 0.36 +0.3 188,906 + LRK53_RS00805 0.40 -0.4 188,906 + LRK53_RS00805 0.40 -0.4 188,907 - LRK53_RS00805 0.40 +0.3 188,927 + LRK53_RS00805 0.42 +0.3 188,928 - LRK53_RS00805 0.42 +0.5 188,937 - LRK53_RS00805 0.43 +3.3 188,937 - LRK53_RS00805 0.43 -0.4 189,050 + LRK53_RS00805 0.54 -1.5 189,050 + LRK53_RS00805 0.54 -1.9 189,050 + LRK53_RS00805 0.54 +3.3 189,050 + LRK53_RS00805 0.54 -1.3 189,050 + LRK53_RS00805 0.54 +0.7 189,051 - LRK53_RS00805 0.54 +0.7 189,051 - LRK53_RS00805 0.54 -1.7 189,314 + LRK53_RS00805 0.79 -0.3 189,314 + LRK53_RS00805 0.79 -1.7 189,314 + LRK53_RS00805 0.79 -1.3 189,315 - LRK53_RS00805 0.79 +0.0 189,315 - LRK53_RS00805 0.79 -1.2 189,315 - LRK53_RS00805 0.79 +1.3 189,315 - LRK53_RS00805 0.79 -1.4 189,335 + LRK53_RS00805 0.81 -1.1 189,335 + LRK53_RS00805 0.81 -1.4 189,336 - LRK53_RS00805 0.81 -0.3 189,353 + LRK53_RS00805 0.82 +0.3 189,353 + LRK53_RS00805 0.82 -1.2 189,487 + -0.7 189,487 + +0.3 189,629 + +1.0 189,629 + -0.3 189,629 + -1.7 189,629 + -0.1 189,629 + +0.9 189,630 - -0.4 189,630 - -1.8 189,630 - +0.9 189,630 - -2.8 189,630 - +0.7 189,634 + -2.3 189,634 + +0.3 189,635 - -0.2 189,635 - -0.3 189,706 - +2.9 189,708 + +0.0 189,708 + +0.5 189,708 + -1.5 189,709 - -0.3 189,709 - +1.3 189,717 + -0.3 189,717 + +1.3 189,717 + -1.3 189,717 + -1.0 189,717 + -0.6 189,717 + -1.2 189,717 + +0.7 189,717 + -0.4 189,717 + +1.6 189,717 + +0.3 189,717 + -0.8 189,717 + +0.0 189,717 + +0.4 189,717 + +0.3 189,717 + -0.1 189,717 + -0.7 189,717 + -0.5 189,717 + +1.0 189,718 - +1.9 189,718 - +0.3 189,718 - +1.3 189,718 - +0.3 189,718 - +0.0 189,718 - +0.3 189,718 - +0.9 189,718 - -0.7 189,718 - -0.9 189,718 - -1.1 189,718 - -0.5 189,718 - -0.5 189,718 - -0.1 189,718 - -1.2 189,718 - -0.7 189,718 - +0.1 189,723 + -0.1 189,723 + -0.6 189,723 + -0.1 189,723 + +0.7 189,724 - -0.5 189,945 + LRK53_RS00810 0.22 +0.3 189,945 + LRK53_RS00810 0.22 -0.9 189,946 - LRK53_RS00810 0.22 +0.5 189,946 - LRK53_RS00810 0.22 -1.2 189,946 - LRK53_RS00810 0.22 +0.3 189,946 - LRK53_RS00810 0.22 -2.1 189,946 - LRK53_RS00810 0.22 +0.7 189,946 - LRK53_RS00810 0.22 -1.3 190,008 + LRK53_RS00810 0.27 -0.9 190,056 + LRK53_RS00810 0.31 -0.3 190,083 + LRK53_RS00810 0.33 -1.9 190,083 + LRK53_RS00810 0.33 +0.4 190,083 + LRK53_RS00810 0.33 -0.4 190,084 - LRK53_RS00810 0.33 -0.5 190,084 - LRK53_RS00810 0.33 +2.5 190,134 + LRK53_RS00810 0.37 -0.4 190,134 + LRK53_RS00810 0.37 +0.6 190,134 + LRK53_RS00810 0.37 +0.5 190,134 + LRK53_RS00810 0.37 +0.7 190,134 + LRK53_RS00810 0.37 -0.9 190,134 + LRK53_RS00810 0.37 +1.0 190,134 + LRK53_RS00810 0.37 +0.7 190,134 + LRK53_RS00810 0.37 -1.1 190,135 - LRK53_RS00810 0.37 +3.3 190,135 - LRK53_RS00810 0.37 +0.4 190,135 - LRK53_RS00810 0.37 +2.3 190,135 - LRK53_RS00810 0.37 +0.3 190,135 - LRK53_RS00810 0.37 +0.9 190,135 - LRK53_RS00810 0.37 +2.3 190,135 - LRK53_RS00810 0.37 +0.3 190,176 + LRK53_RS00810 0.40 +0.1 190,176 + LRK53_RS00810 0.40 +0.5 190,176 + LRK53_RS00810 0.40 +1.5 190,176 + LRK53_RS00810 0.40 +0.3 190,176 + LRK53_RS00810 0.40 +0.3 190,177 + LRK53_RS00810 0.40 -1.1 190,177 - LRK53_RS00810 0.40 -0.2 190,177 - LRK53_RS00810 0.40 +1.3 190,177 - LRK53_RS00810 0.40 +0.5 190,177 - LRK53_RS00810 0.40 -0.6 190,177 - LRK53_RS00810 0.40 +0.4 190,177 - LRK53_RS00810 0.40 -1.3 190,177 - LRK53_RS00810 0.40 +1.9 190,344 + LRK53_RS00810 0.53 -0.2 190,344 + LRK53_RS00810 0.53 +1.3 190,344 + LRK53_RS00810 0.53 -1.3 190,344 + LRK53_RS00810 0.53 +0.1 190,344 + LRK53_RS00810 0.53 -0.2 190,344 + LRK53_RS00810 0.53 +2.5 190,344 + LRK53_RS00810 0.53 -1.9 190,344 + LRK53_RS00810 0.53 -0.2 190,344 + LRK53_RS00810 0.53 -0.9 190,344 + LRK53_RS00810 0.53 -0.7 190,344 + LRK53_RS00810 0.53 +1.3 190,345 - LRK53_RS00810 0.53 +0.8 190,345 - LRK53_RS00810 0.53 +3.6 190,345 - LRK53_RS00810 0.53 +2.3 190,345 - LRK53_RS00810 0.53 +0.3 190,345 - LRK53_RS00810 0.53 -0.7 190,345 - LRK53_RS00810 0.53 -1.1 190,345 - LRK53_RS00810 0.53 -0.4 190,345 - LRK53_RS00810 0.53 +0.3 190,345 - LRK53_RS00810 0.53 +0.3 190,345 - LRK53_RS00810 0.53 +1.3 190,345 - LRK53_RS00810 0.53 +1.3 190,345 - LRK53_RS00810 0.53 -0.5 190,345 - LRK53_RS00810 0.53 -1.4 190,345 - LRK53_RS00810 0.53 +0.2 190,345 - LRK53_RS00810 0.53 -2.3
Or see this region's nucleotide sequence