Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00735 and LRK53_RS00740 are separated by 22 nucleotides LRK53_RS00740 and LRK53_RS00745 are separated by 52 nucleotides LRK53_RS00745 and LRK53_RS00750 are separated by 163 nucleotides
LRK53_RS00735: LRK53_RS00735 - efflux transporter outer membrane subunit, at 173,154 to 174,605
_RS00735
LRK53_RS00740: LRK53_RS00740 - MarR family transcriptional regulator, at 174,628 to 175,086
_RS00740
LRK53_RS00745: LRK53_RS00745 - hypothetical protein, at 175,139 to 175,309
_RS00745
LRK53_RS00750: LRK53_RS00750 - efflux RND transporter permease subunit, at 175,473 to 178,715
_RS00750
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 174.055 kb on + strand, within LRK53_RS00735 at 174.055 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.070 kb on + strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.071 kb on - strand, within LRK53_RS00735 at 174.208 kb on + strand, within LRK53_RS00735 at 174.208 kb on + strand, within LRK53_RS00735 at 174.209 kb on - strand, within LRK53_RS00735 at 174.209 kb on - strand, within LRK53_RS00735 at 174.209 kb on - strand, within LRK53_RS00735 at 174.209 kb on - strand, within LRK53_RS00735 at 174.214 kb on + strand, within LRK53_RS00735 at 174.214 kb on + strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.215 kb on - strand, within LRK53_RS00735 at 174.668 kb on + strand at 174.668 kb on + strand at 174.668 kb on + strand at 174.668 kb on + strand at 174.668 kb on + strand at 174.668 kb on + strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.669 kb on - strand at 174.830 kb on + strand, within LRK53_RS00740 at 174.830 kb on + strand, within LRK53_RS00740 at 174.831 kb on - strand, within LRK53_RS00740 at 174.831 kb on - strand, within LRK53_RS00740 at 174.831 kb on - strand, within LRK53_RS00740 at 174.831 kb on - strand, within LRK53_RS00740 at 174.831 kb on - strand, within LRK53_RS00740 at 175.081 kb on - strand at 175.081 kb on - strand at 175.099 kb on + strand at 175.099 kb on + strand at 175.100 kb on - strand at 175.100 kb on - strand at 175.344 kb on + strand at 175.344 kb on + strand at 175.376 kb on + strand at 175.376 kb on + strand at 175.377 kb on - strand at 175.377 kb on - strand at 175.377 kb on - strand at 175.377 kb on - strand at 175.377 kb on - strand at 175.403 kb on + strand at 175.403 kb on + strand at 175.404 kb on - strand at 175.404 kb on - strand at 175.404 kb on - strand at 175.528 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.531 kb on + strand at 175.532 kb on - strand at 175.532 kb on - strand at 175.532 kb on - strand at 175.532 kb on - strand at 175.532 kb on - strand at 175.584 kb on + strand at 175.584 kb on + strand at 175.584 kb on + strand at 175.584 kb on + strand at 175.585 kb on - strand at 175.585 kb on - strand at 175.585 kb on - strand at 175.906 kb on + strand, within LRK53_RS00750 at 175.906 kb on + strand, within LRK53_RS00750 at 175.906 kb on + strand, within LRK53_RS00750 at 175.906 kb on + strand, within LRK53_RS00750 at 175.906 kb on + strand, within LRK53_RS00750 at 175.907 kb on - strand, within LRK53_RS00750 at 175.907 kb on - strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.936 kb on + strand, within LRK53_RS00750 at 175.937 kb on - strand, within LRK53_RS00750 at 175.937 kb on - strand, within LRK53_RS00750 at 175.937 kb on - strand, within LRK53_RS00750 at 175.937 kb on - strand, within LRK53_RS00750 at 175.937 kb on - strand, within LRK53_RS00750 at 175.961 kb on - strand, within LRK53_RS00750 at 175.961 kb on - strand, within LRK53_RS00750
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 174,055 + LRK53_RS00735 0.62 -0.6 174,055 + LRK53_RS00735 0.62 +1.5 174,070 + LRK53_RS00735 0.63 +3.1 174,070 + LRK53_RS00735 0.63 +0.7 174,070 + LRK53_RS00735 0.63 -1.3 174,070 + LRK53_RS00735 0.63 +0.4 174,070 + LRK53_RS00735 0.63 -1.7 174,070 + LRK53_RS00735 0.63 +0.6 174,070 + LRK53_RS00735 0.63 +0.1 174,070 + LRK53_RS00735 0.63 -0.0 174,070 + LRK53_RS00735 0.63 -1.1 174,070 + LRK53_RS00735 0.63 +1.3 174,070 + LRK53_RS00735 0.63 +0.9 174,070 + LRK53_RS00735 0.63 -0.1 174,070 + LRK53_RS00735 0.63 -0.4 174,070 + LRK53_RS00735 0.63 -0.3 174,070 + LRK53_RS00735 0.63 +0.0 174,070 + LRK53_RS00735 0.63 +0.0 174,070 + LRK53_RS00735 0.63 +0.3 174,070 + LRK53_RS00735 0.63 -1.3 174,071 - LRK53_RS00735 0.63 +1.7 174,071 - LRK53_RS00735 0.63 -0.1 174,071 - LRK53_RS00735 0.63 -1.3 174,071 - LRK53_RS00735 0.63 -0.7 174,071 - LRK53_RS00735 0.63 -0.3 174,071 - LRK53_RS00735 0.63 +1.3 174,071 - LRK53_RS00735 0.63 -0.2 174,071 - LRK53_RS00735 0.63 +0.3 174,071 - LRK53_RS00735 0.63 -1.1 174,071 - LRK53_RS00735 0.63 +0.5 174,071 - LRK53_RS00735 0.63 +0.1 174,071 - LRK53_RS00735 0.63 -2.2 174,071 - LRK53_RS00735 0.63 +0.1 174,071 - LRK53_RS00735 0.63 -0.6 174,071 - LRK53_RS00735 0.63 -0.4 174,071 - LRK53_RS00735 0.63 -0.1 174,071 - LRK53_RS00735 0.63 -0.8 174,071 - LRK53_RS00735 0.63 +1.3 174,071 - LRK53_RS00735 0.63 -1.3 174,071 - LRK53_RS00735 0.63 -0.2 174,071 - LRK53_RS00735 0.63 +0.3 174,071 - LRK53_RS00735 0.63 -0.7 174,071 - LRK53_RS00735 0.63 -0.5 174,208 + LRK53_RS00735 0.73 -0.9 174,208 + LRK53_RS00735 0.73 +0.4 174,209 - LRK53_RS00735 0.73 -0.1 174,209 - LRK53_RS00735 0.73 +0.9 174,209 - LRK53_RS00735 0.73 -2.1 174,209 - LRK53_RS00735 0.73 +0.8 174,214 + LRK53_RS00735 0.73 -1.2 174,214 + LRK53_RS00735 0.73 -0.1 174,215 - LRK53_RS00735 0.73 -0.6 174,215 - LRK53_RS00735 0.73 -1.1 174,215 - LRK53_RS00735 0.73 +1.0 174,215 - LRK53_RS00735 0.73 +0.8 174,215 - LRK53_RS00735 0.73 -1.2 174,215 - LRK53_RS00735 0.73 -1.2 174,215 - LRK53_RS00735 0.73 -0.5 174,668 + -0.7 174,668 + +1.3 174,668 + +0.8 174,668 + -1.7 174,668 + -1.1 174,668 + +0.0 174,669 - -0.6 174,669 - +0.8 174,669 - +0.9 174,669 - -0.5 174,669 - +1.3 174,669 - -0.1 174,669 - -0.1 174,669 - +1.0 174,669 - -1.1 174,669 - -0.3 174,669 - +0.7 174,669 - +2.3 174,830 + LRK53_RS00740 0.44 -0.3 174,830 + LRK53_RS00740 0.44 -1.5 174,831 - LRK53_RS00740 0.44 -1.4 174,831 - LRK53_RS00740 0.44 -0.5 174,831 - LRK53_RS00740 0.44 +0.1 174,831 - LRK53_RS00740 0.44 -2.9 174,831 - LRK53_RS00740 0.44 -0.2 175,081 - -0.5 175,081 - -0.9 175,099 + -1.1 175,099 + +1.3 175,100 - +0.5 175,100 - -0.7 175,344 + +0.3 175,344 + -0.1 175,376 + -2.3 175,376 + -0.5 175,377 - -0.3 175,377 - -0.2 175,377 - -1.0 175,377 - +1.3 175,377 - -1.3 175,403 + -0.9 175,403 + -0.1 175,404 - -0.3 175,404 - -0.6 175,404 - +0.0 175,528 + -1.1 175,531 + -0.2 175,531 + -0.5 175,531 + -0.3 175,531 + +1.3 175,531 + -2.3 175,531 + -2.4 175,531 + -1.7 175,531 + -0.3 175,531 + -0.7 175,531 + +0.9 175,532 - +0.7 175,532 - -0.3 175,532 - +0.5 175,532 - +0.3 175,532 - +1.3 175,584 + +0.3 175,584 + -2.1 175,584 + +0.6 175,584 + -0.3 175,585 - -0.3 175,585 - +0.3 175,585 - +0.1 175,906 + LRK53_RS00750 0.13 -1.5 175,906 + LRK53_RS00750 0.13 -2.1 175,906 + LRK53_RS00750 0.13 -2.1 175,906 + LRK53_RS00750 0.13 -0.0 175,906 + LRK53_RS00750 0.13 +1.0 175,907 - LRK53_RS00750 0.13 +0.7 175,907 - LRK53_RS00750 0.13 +1.3 175,936 + LRK53_RS00750 0.14 +0.4 175,936 + LRK53_RS00750 0.14 -0.2 175,936 + LRK53_RS00750 0.14 +0.2 175,936 + LRK53_RS00750 0.14 -0.3 175,936 + LRK53_RS00750 0.14 +0.7 175,936 + LRK53_RS00750 0.14 -1.3 175,937 - LRK53_RS00750 0.14 +1.0 175,937 - LRK53_RS00750 0.14 -1.3 175,937 - LRK53_RS00750 0.14 -1.1 175,937 - LRK53_RS00750 0.14 -1.9 175,937 - LRK53_RS00750 0.14 +0.0 175,961 - LRK53_RS00750 0.15 -0.2 175,961 - LRK53_RS00750 0.15 +1.3
Or see this region's nucleotide sequence