Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00545

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00540 and LRK53_RS00545 are separated by 7 nucleotidesLRK53_RS00545 and LRK53_RS00550 are separated by 416 nucleotides LRK53_RS00540: LRK53_RS00540 - nucleotidyltransferase family protein, at 118,423 to 119,667 _RS00540 LRK53_RS00545: LRK53_RS00545 - B12-binding domain-containing radical SAM protein, at 119,675 to 121,150 _RS00545 LRK53_RS00550: LRK53_RS00550 - serine kinase, at 121,567 to 122,589 _RS00550 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 119.066 kb on + strand, within LRK53_RS00540at 119.066 kb on + strand, within LRK53_RS00540at 119.066 kb on + strand, within LRK53_RS00540at 119.066 kb on + strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.324 kb on + strand, within LRK53_RS00540at 119.324 kb on + strand, within LRK53_RS00540at 119.324 kb on + strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.679 kb on + strandat 119.679 kb on + strandat 119.679 kb on + strandat 119.679 kb on + strandat 119.868 kb on + strand, within LRK53_RS00545at 119.868 kb on + strand, within LRK53_RS00545at 119.869 kb on - strand, within LRK53_RS00545at 119.869 kb on - strand, within LRK53_RS00545at 119.883 kb on + strand, within LRK53_RS00545at 119.883 kb on + strand, within LRK53_RS00545at 119.965 kb on - strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.409 kb on - strand, within LRK53_RS00545at 120.409 kb on - strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.451 kb on - strand, within LRK53_RS00545at 120.451 kb on - strand, within LRK53_RS00545at 120.451 kb on - strand, within LRK53_RS00545at 120.531 kb on + strand, within LRK53_RS00545at 120.531 kb on + strand, within LRK53_RS00545at 120.532 kb on - strand, within LRK53_RS00545at 120.532 kb on - strand, within LRK53_RS00545at 120.561 kb on + strand, within LRK53_RS00545at 120.933 kb on + strand, within LRK53_RS00545at 120.933 kb on + strand, within LRK53_RS00545at 120.933 kb on + strand, within LRK53_RS00545at 120.934 kb on - strand, within LRK53_RS00545at 120.934 kb on - strand, within LRK53_RS00545at 121.122 kb on + strandat 121.122 kb on + strandat 121.122 kb on + strandat 121.122 kb on + strandat 121.122 kb on + strandat 121.122 kb on + strandat 121.122 kb on + strandat 121.123 kb on - strandat 121.123 kb on - strandat 121.123 kb on - strandat 121.123 kb on - strandat 121.123 kb on - strandat 121.123 kb on - strandat 121.216 kb on + strandat 121.216 kb on + strandat 121.216 kb on + strandat 121.216 kb on + strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.217 kb on - strandat 121.440 kb on + strandat 121.440 kb on + strandat 121.440 kb on + strandat 121.440 kb on + strandat 121.440 kb on + strandat 121.441 kb on - strandat 121.441 kb on - strandat 121.441 kb on - strandat 121.458 kb on - strandat 121.469 kb on + strandat 121.469 kb on + strandat 121.469 kb on + strandat 121.470 kb on - strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.724 kb on - strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.886 kb on - strand, within LRK53_RS00550at 121.886 kb on - strand, within LRK53_RS00550at 121.955 kb on - strand, within LRK53_RS00550

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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119,066 + LRK53_RS00540 0.52 +0.1
119,066 + LRK53_RS00540 0.52 -1.3
119,066 + LRK53_RS00540 0.52 +1.7
119,066 + LRK53_RS00540 0.52 -1.1
119,067 - LRK53_RS00540 0.52 +0.8
119,067 - LRK53_RS00540 0.52 +0.4
119,067 - LRK53_RS00540 0.52 +0.1
119,067 - LRK53_RS00540 0.52 -0.9
119,067 - LRK53_RS00540 0.52 -3.2
119,324 + LRK53_RS00540 0.72 -0.7
119,324 + LRK53_RS00540 0.72 -1.1
119,324 + LRK53_RS00540 0.72 -0.6
119,325 - LRK53_RS00540 0.72 -0.6
119,325 - LRK53_RS00540 0.72 -1.7
119,325 - LRK53_RS00540 0.72 +2.3
119,325 - LRK53_RS00540 0.72 -1.7
119,325 - LRK53_RS00540 0.72 +1.7
119,325 - LRK53_RS00540 0.72 -1.7
119,325 - LRK53_RS00540 0.72 +1.1
119,679 + -0.5
119,679 + +0.1
119,679 + +0.3
119,679 + -1.5
119,868 + LRK53_RS00545 0.13 -1.7
119,868 + LRK53_RS00545 0.13 -0.9
119,869 - LRK53_RS00545 0.13 -1.2
119,869 - LRK53_RS00545 0.13 -0.1
119,883 + LRK53_RS00545 0.14 -0.9
119,883 + LRK53_RS00545 0.14 -0.5
119,965 - LRK53_RS00545 0.20 -1.2
120,408 + LRK53_RS00545 0.50 +0.0
120,408 + LRK53_RS00545 0.50 +0.4
120,408 + LRK53_RS00545 0.50 -2.5
120,409 - LRK53_RS00545 0.50 -2.2
120,409 - LRK53_RS00545 0.50 -0.2
120,450 + LRK53_RS00545 0.53 -1.7
120,450 + LRK53_RS00545 0.53 +0.1
120,450 + LRK53_RS00545 0.53 +1.1
120,450 + LRK53_RS00545 0.53 -0.7
120,450 + LRK53_RS00545 0.53 -0.7
120,450 + LRK53_RS00545 0.53 -0.7
120,450 + LRK53_RS00545 0.53 +0.4
120,450 + LRK53_RS00545 0.53 -0.7
120,450 + LRK53_RS00545 0.53 -1.7
120,450 + LRK53_RS00545 0.53 -3.0
120,451 - LRK53_RS00545 0.53 +0.1
120,451 - LRK53_RS00545 0.53 -1.7
120,451 - LRK53_RS00545 0.53 +1.1
120,531 + LRK53_RS00545 0.58 -0.0
120,531 + LRK53_RS00545 0.58 -0.0
120,532 - LRK53_RS00545 0.58 +1.1
120,532 - LRK53_RS00545 0.58 +2.4
120,561 + LRK53_RS00545 0.60 -2.2
120,933 + LRK53_RS00545 0.85 +0.5
120,933 + LRK53_RS00545 0.85 -1.5
120,933 + LRK53_RS00545 0.85 -1.2
120,934 - LRK53_RS00545 0.85 +1.4
120,934 - LRK53_RS00545 0.85 -1.5
121,122 + -0.5
121,122 + -0.5
121,122 + +1.1
121,122 + -0.7
121,122 + -0.7
121,122 + -0.9
121,122 + -0.6
121,123 - -1.5
121,123 - -2.5
121,123 - +1.7
121,123 - -0.7
121,123 - -1.5
121,123 - -0.7
121,216 + +0.4
121,216 + -0.9
121,216 + +0.1
121,216 + +0.1
121,217 - +2.3
121,217 - -0.7
121,217 - -1.5
121,217 - -1.2
121,217 - -2.3
121,217 - +0.1
121,217 - +1.1
121,440 + -0.5
121,440 + -1.0
121,440 + -1.5
121,440 + +3.1
121,440 + -0.5
121,441 - +0.3
121,441 - +1.1
121,441 - -1.3
121,458 - +1.1
121,469 + -1.2
121,469 + -1.6
121,469 + +0.2
121,470 - -0.3
121,522 + -0.1
121,522 + +2.7
121,522 + -0.9
121,522 + +0.7
121,522 + +0.7
121,522 + +0.1
121,523 - -0.9
121,523 - -0.7
121,523 - -0.1
121,523 - +1.1
121,523 - +0.0
121,523 - +0.8
121,523 - -0.9
121,724 - LRK53_RS00550 0.15 +1.1
121,885 + LRK53_RS00550 0.31 +0.7
121,885 + LRK53_RS00550 0.31 -0.7
121,885 + LRK53_RS00550 0.31 +1.1
121,885 + LRK53_RS00550 0.31 -0.8
121,885 + LRK53_RS00550 0.31 +0.6
121,885 + LRK53_RS00550 0.31 -0.8
121,885 + LRK53_RS00550 0.31 +0.1
121,885 + LRK53_RS00550 0.31 -0.2
121,885 + LRK53_RS00550 0.31 -2.1
121,886 - LRK53_RS00550 0.31 +0.7
121,886 - LRK53_RS00550 0.31 -2.2
121,955 - LRK53_RS00550 0.38 +0.2

Or see this region's nucleotide sequence