Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00535 and LRK53_RS00540 are separated by 224 nucleotides LRK53_RS00540 and LRK53_RS00545 are separated by 7 nucleotides
LRK53_RS00535: LRK53_RS00535 - CHAD domain-containing protein, at 117,401 to 118,198
_RS00535
LRK53_RS00540: LRK53_RS00540 - nucleotidyltransferase family protein, at 118,423 to 119,667
_RS00540
LRK53_RS00545: LRK53_RS00545 - B12-binding domain-containing radical SAM protein, at 119,675 to 121,150
_RS00545
Position (kb)
118
119
120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 117.479 kb on + strand at 117.479 kb on + strand at 117.479 kb on + strand at 117.480 kb on - strand at 117.480 kb on - strand at 117.662 kb on - strand, within LRK53_RS00535 at 118.301 kb on + strand at 118.301 kb on + strand at 118.301 kb on + strand at 118.302 kb on - strand at 118.424 kb on + strand at 118.424 kb on + strand at 118.424 kb on + strand at 118.424 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.324 kb on + strand, within LRK53_RS00540 at 119.324 kb on + strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.679 kb on + strand at 119.679 kb on + strand at 119.679 kb on + strand at 119.679 kb on + strand at 119.680 kb on - strand at 119.868 kb on + strand, within LRK53_RS00545 at 119.868 kb on + strand, within LRK53_RS00545 at 119.869 kb on - strand, within LRK53_RS00545 at 119.883 kb on + strand, within LRK53_RS00545 at 119.883 kb on + strand, within LRK53_RS00545 at 119.965 kb on - strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.409 kb on - strand, within LRK53_RS00545 at 120.409 kb on - strand, within LRK53_RS00545 at 120.409 kb on - strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.451 kb on - strand, within LRK53_RS00545 at 120.531 kb on + strand, within LRK53_RS00545 at 120.532 kb on - strand, within LRK53_RS00545 at 120.532 kb on - strand, within LRK53_RS00545
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 117,479 + +2.3 117,479 + -1.1 117,479 + +1.1 117,480 - +1.3 117,480 - +2.3 117,662 - LRK53_RS00535 0.33 +0.9 118,301 + -0.3 118,301 + -0.9 118,301 + +0.9 118,302 - +1.0 118,424 + -0.1 118,424 + +0.3 118,424 + -2.1 118,424 + +1.0 118,496 + -1.4 118,496 + +1.3 118,496 + -0.5 118,496 + -0.3 118,496 + -1.3 118,496 + +0.3 118,496 + +2.3 118,496 + +0.5 118,496 + +0.7 118,496 + -1.5 118,496 + -1.1 118,496 + -0.1 118,496 + -0.1 118,496 + +1.3 118,496 + -1.2 118,496 + -0.8 118,496 + -0.0 118,496 + -0.5 118,496 + -2.1 118,496 + -2.7 118,496 + +0.7 118,496 + -1.7 118,496 + +2.3 118,496 + +1.7 118,496 + -0.3 118,496 + -0.4 118,496 + -0.1 118,496 + +0.6 118,496 + +0.1 118,497 - -0.2 118,497 - -0.6 118,497 - +0.3 118,497 - -0.7 118,497 - -0.1 118,497 - +0.8 118,497 - +1.3 118,497 - -0.6 118,497 - +1.3 118,497 - +0.3 118,497 - +0.6 118,497 - -0.5 118,497 - +0.3 118,497 - -0.3 118,497 - +0.9 118,497 - -0.2 118,497 - -2.1 118,497 - -1.1 118,497 - -0.7 118,497 - +0.6 118,497 - -1.7 118,497 - +1.3 118,497 - -2.1 118,497 - +1.3 118,497 - +2.3 118,497 - +1.3 118,497 - +0.5 118,497 - -1.1 118,497 - +1.3 118,497 - -0.7 118,497 - -1.5 118,497 - -0.3 118,497 - +1.3 118,497 - -0.7 118,497 - -2.0 118,497 - +0.5 118,497 - -1.5 118,497 - -0.6 118,497 - +0.3 118,497 - -0.7 118,497 - +0.2 119,066 + LRK53_RS00540 0.52 -1.2 119,066 + LRK53_RS00540 0.52 -0.9 119,066 + LRK53_RS00540 0.52 -1.7 119,067 - LRK53_RS00540 0.52 +0.9 119,067 - LRK53_RS00540 0.52 +0.6 119,067 - LRK53_RS00540 0.52 +0.3 119,067 - LRK53_RS00540 0.52 -0.7 119,067 - LRK53_RS00540 0.52 -3.1 119,067 - LRK53_RS00540 0.52 -1.1 119,324 + LRK53_RS00540 0.72 -0.9 119,324 + LRK53_RS00540 0.72 -0.4 119,325 - LRK53_RS00540 0.72 -0.5 119,325 - LRK53_RS00540 0.72 -1.5 119,325 - LRK53_RS00540 0.72 -1.5 119,325 - LRK53_RS00540 0.72 +1.9 119,325 - LRK53_RS00540 0.72 -1.5 119,679 + -0.3 119,679 + +0.3 119,679 + +0.5 119,679 + -1.3 119,680 - +0.7 119,868 + LRK53_RS00545 0.13 -1.5 119,868 + LRK53_RS00545 0.13 -0.7 119,869 - LRK53_RS00545 0.13 +0.0 119,883 + LRK53_RS00545 0.14 -0.7 119,883 + LRK53_RS00545 0.14 -0.3 119,965 - LRK53_RS00545 0.20 -1.1 120,408 + LRK53_RS00545 0.50 +0.5 120,408 + LRK53_RS00545 0.50 -2.3 120,408 + LRK53_RS00545 0.50 -0.1 120,409 - LRK53_RS00545 0.50 -2.1 120,409 - LRK53_RS00545 0.50 -0.0 120,409 - LRK53_RS00545 0.50 -1.1 120,450 + LRK53_RS00545 0.53 -1.6 120,450 + LRK53_RS00545 0.53 -0.5 120,450 + LRK53_RS00545 0.53 -0.5 120,450 + LRK53_RS00545 0.53 +0.3 120,450 + LRK53_RS00545 0.53 -0.5 120,450 + LRK53_RS00545 0.53 +0.5 120,450 + LRK53_RS00545 0.53 -0.5 120,450 + LRK53_RS00545 0.53 -1.5 120,450 + LRK53_RS00545 0.53 -2.9 120,451 - LRK53_RS00545 0.53 -1.5 120,531 + LRK53_RS00545 0.58 +0.1 120,532 - LRK53_RS00545 0.58 +0.9 120,532 - LRK53_RS00545 0.58 +2.6
Or see this region's nucleotide sequence