Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00540

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00535 and LRK53_RS00540 are separated by 224 nucleotidesLRK53_RS00540 and LRK53_RS00545 are separated by 7 nucleotides LRK53_RS00535: LRK53_RS00535 - CHAD domain-containing protein, at 117,401 to 118,198 _RS00535 LRK53_RS00540: LRK53_RS00540 - nucleotidyltransferase family protein, at 118,423 to 119,667 _RS00540 LRK53_RS00545: LRK53_RS00545 - B12-binding domain-containing radical SAM protein, at 119,675 to 121,150 _RS00545 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.479 kb on + strandat 117.479 kb on + strandat 117.479 kb on + strandat 117.480 kb on - strandat 117.480 kb on - strandat 117.662 kb on - strand, within LRK53_RS00535at 118.301 kb on + strandat 118.301 kb on + strandat 118.301 kb on + strandat 118.302 kb on - strandat 118.424 kb on + strandat 118.424 kb on + strandat 118.424 kb on + strandat 118.424 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.496 kb on + strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 118.497 kb on - strandat 119.066 kb on + strand, within LRK53_RS00540at 119.066 kb on + strand, within LRK53_RS00540at 119.066 kb on + strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.067 kb on - strand, within LRK53_RS00540at 119.324 kb on + strand, within LRK53_RS00540at 119.324 kb on + strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.325 kb on - strand, within LRK53_RS00540at 119.679 kb on + strandat 119.679 kb on + strandat 119.679 kb on + strandat 119.679 kb on + strandat 119.680 kb on - strandat 119.868 kb on + strand, within LRK53_RS00545at 119.868 kb on + strand, within LRK53_RS00545at 119.869 kb on - strand, within LRK53_RS00545at 119.883 kb on + strand, within LRK53_RS00545at 119.883 kb on + strand, within LRK53_RS00545at 119.965 kb on - strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.408 kb on + strand, within LRK53_RS00545at 120.409 kb on - strand, within LRK53_RS00545at 120.409 kb on - strand, within LRK53_RS00545at 120.409 kb on - strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.450 kb on + strand, within LRK53_RS00545at 120.451 kb on - strand, within LRK53_RS00545at 120.531 kb on + strand, within LRK53_RS00545at 120.532 kb on - strand, within LRK53_RS00545at 120.532 kb on - strand, within LRK53_RS00545

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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117,479 + +2.3
117,479 + -1.1
117,479 + +1.1
117,480 - +1.3
117,480 - +2.3
117,662 - LRK53_RS00535 0.33 +0.9
118,301 + -0.3
118,301 + -0.9
118,301 + +0.9
118,302 - +1.0
118,424 + -0.1
118,424 + +0.3
118,424 + -2.1
118,424 + +1.0
118,496 + -1.4
118,496 + +1.3
118,496 + -0.5
118,496 + -0.3
118,496 + -1.3
118,496 + +0.3
118,496 + +2.3
118,496 + +0.5
118,496 + +0.7
118,496 + -1.5
118,496 + -1.1
118,496 + -0.1
118,496 + -0.1
118,496 + +1.3
118,496 + -1.2
118,496 + -0.8
118,496 + -0.0
118,496 + -0.5
118,496 + -2.1
118,496 + -2.7
118,496 + +0.7
118,496 + -1.7
118,496 + +2.3
118,496 + +1.7
118,496 + -0.3
118,496 + -0.4
118,496 + -0.1
118,496 + +0.6
118,496 + +0.1
118,497 - -0.2
118,497 - -0.6
118,497 - +0.3
118,497 - -0.7
118,497 - -0.1
118,497 - +0.8
118,497 - +1.3
118,497 - -0.6
118,497 - +1.3
118,497 - +0.3
118,497 - +0.6
118,497 - -0.5
118,497 - +0.3
118,497 - -0.3
118,497 - +0.9
118,497 - -0.2
118,497 - -2.1
118,497 - -1.1
118,497 - -0.7
118,497 - +0.6
118,497 - -1.7
118,497 - +1.3
118,497 - -2.1
118,497 - +1.3
118,497 - +2.3
118,497 - +1.3
118,497 - +0.5
118,497 - -1.1
118,497 - +1.3
118,497 - -0.7
118,497 - -1.5
118,497 - -0.3
118,497 - +1.3
118,497 - -0.7
118,497 - -2.0
118,497 - +0.5
118,497 - -1.5
118,497 - -0.6
118,497 - +0.3
118,497 - -0.7
118,497 - +0.2
119,066 + LRK53_RS00540 0.52 -1.2
119,066 + LRK53_RS00540 0.52 -0.9
119,066 + LRK53_RS00540 0.52 -1.7
119,067 - LRK53_RS00540 0.52 +0.9
119,067 - LRK53_RS00540 0.52 +0.6
119,067 - LRK53_RS00540 0.52 +0.3
119,067 - LRK53_RS00540 0.52 -0.7
119,067 - LRK53_RS00540 0.52 -3.1
119,067 - LRK53_RS00540 0.52 -1.1
119,324 + LRK53_RS00540 0.72 -0.9
119,324 + LRK53_RS00540 0.72 -0.4
119,325 - LRK53_RS00540 0.72 -0.5
119,325 - LRK53_RS00540 0.72 -1.5
119,325 - LRK53_RS00540 0.72 -1.5
119,325 - LRK53_RS00540 0.72 +1.9
119,325 - LRK53_RS00540 0.72 -1.5
119,679 + -0.3
119,679 + +0.3
119,679 + +0.5
119,679 + -1.3
119,680 - +0.7
119,868 + LRK53_RS00545 0.13 -1.5
119,868 + LRK53_RS00545 0.13 -0.7
119,869 - LRK53_RS00545 0.13 +0.0
119,883 + LRK53_RS00545 0.14 -0.7
119,883 + LRK53_RS00545 0.14 -0.3
119,965 - LRK53_RS00545 0.20 -1.1
120,408 + LRK53_RS00545 0.50 +0.5
120,408 + LRK53_RS00545 0.50 -2.3
120,408 + LRK53_RS00545 0.50 -0.1
120,409 - LRK53_RS00545 0.50 -2.1
120,409 - LRK53_RS00545 0.50 -0.0
120,409 - LRK53_RS00545 0.50 -1.1
120,450 + LRK53_RS00545 0.53 -1.6
120,450 + LRK53_RS00545 0.53 -0.5
120,450 + LRK53_RS00545 0.53 -0.5
120,450 + LRK53_RS00545 0.53 +0.3
120,450 + LRK53_RS00545 0.53 -0.5
120,450 + LRK53_RS00545 0.53 +0.5
120,450 + LRK53_RS00545 0.53 -0.5
120,450 + LRK53_RS00545 0.53 -1.5
120,450 + LRK53_RS00545 0.53 -2.9
120,451 - LRK53_RS00545 0.53 -1.5
120,531 + LRK53_RS00545 0.58 +0.1
120,532 - LRK53_RS00545 0.58 +0.9
120,532 - LRK53_RS00545 0.58 +2.6

Or see this region's nucleotide sequence