Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00520

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00515 and LRK53_RS00520 are separated by 13 nucleotidesLRK53_RS00520 and LRK53_RS00525 overlap by 4 nucleotides LRK53_RS00515: LRK53_RS00515 - B12-binding domain-containing radical SAM protein, at 112,367 to 113,875 _RS00515 LRK53_RS00520: LRK53_RS00520 - glycosyltransferase family 4 protein, at 113,889 to 115,007 _RS00520 LRK53_RS00525: LRK53_RS00525 - glycosyltransferase family 4 protein, at 115,004 to 116,110 _RS00525 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.910 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.925 kb on + strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.926 kb on - strand, within LRK53_RS00515at 112.974 kb on - strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.060 kb on + strand, within LRK53_RS00515at 113.061 kb on - strand, within LRK53_RS00515at 113.061 kb on - strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.096 kb on + strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.097 kb on - strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.261 kb on + strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.262 kb on - strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.486 kb on + strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.487 kb on - strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.492 kb on + strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.493 kb on - strand, within LRK53_RS00515at 113.630 kb on + strand, within LRK53_RS00515at 113.630 kb on + strand, within LRK53_RS00515at 113.630 kb on + strand, within LRK53_RS00515at 113.801 kb on + strandat 113.801 kb on + strandat 113.801 kb on + strandat 113.801 kb on + strandat 113.801 kb on + strandat 113.802 kb on - strandat 113.862 kb on + strandat 113.862 kb on + strandat 113.863 kb on - strandat 114.163 kb on + strand, within LRK53_RS00520at 114.163 kb on + strand, within LRK53_RS00520at 114.163 kb on + strand, within LRK53_RS00520at 114.163 kb on + strand, within LRK53_RS00520at 114.163 kb on + strand, within LRK53_RS00520at 114.163 kb on + strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.164 kb on - strand, within LRK53_RS00520at 114.282 kb on + strand, within LRK53_RS00520at 114.966 kb on + strandat 114.967 kb on - strandat 114.967 kb on - strandat 115.377 kb on - strand, within LRK53_RS00525at 115.872 kb on + strand, within LRK53_RS00525at 115.872 kb on + strand, within LRK53_RS00525

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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112,910 + LRK53_RS00515 0.36 -0.0
112,925 + LRK53_RS00515 0.37 -0.2
112,925 + LRK53_RS00515 0.37 -2.8
112,925 + LRK53_RS00515 0.37 -0.2
112,925 + LRK53_RS00515 0.37 +2.7
112,925 + LRK53_RS00515 0.37 +1.4
112,925 + LRK53_RS00515 0.37 -1.0
112,925 + LRK53_RS00515 0.37 -0.0
112,926 - LRK53_RS00515 0.37 -2.1
112,926 - LRK53_RS00515 0.37 -0.5
112,926 - LRK53_RS00515 0.37 +2.7
112,926 - LRK53_RS00515 0.37 -0.3
112,926 - LRK53_RS00515 0.37 +0.4
112,926 - LRK53_RS00515 0.37 -0.8
112,926 - LRK53_RS00515 0.37 +0.4
112,974 - LRK53_RS00515 0.40 -1.5
113,060 + LRK53_RS00515 0.46 -0.5
113,060 + LRK53_RS00515 0.46 +1.6
113,060 + LRK53_RS00515 0.46 -0.1
113,060 + LRK53_RS00515 0.46 -0.5
113,060 + LRK53_RS00515 0.46 +0.9
113,060 + LRK53_RS00515 0.46 -1.5
113,060 + LRK53_RS00515 0.46 +1.1
113,060 + LRK53_RS00515 0.46 -1.5
113,061 - LRK53_RS00515 0.46 -1.5
113,061 - LRK53_RS00515 0.46 -2.1
113,096 + LRK53_RS00515 0.48 -0.6
113,096 + LRK53_RS00515 0.48 +0.6
113,096 + LRK53_RS00515 0.48 +0.1
113,097 - LRK53_RS00515 0.48 +0.4
113,097 - LRK53_RS00515 0.48 +0.1
113,097 - LRK53_RS00515 0.48 +1.1
113,097 - LRK53_RS00515 0.48 +0.8
113,261 + LRK53_RS00515 0.59 +1.1
113,261 + LRK53_RS00515 0.59 +0.7
113,261 + LRK53_RS00515 0.59 +2.3
113,261 + LRK53_RS00515 0.59 -0.6
113,261 + LRK53_RS00515 0.59 +0.1
113,262 - LRK53_RS00515 0.59 -1.2
113,262 - LRK53_RS00515 0.59 -0.9
113,262 - LRK53_RS00515 0.59 -0.6
113,262 - LRK53_RS00515 0.59 -2.1
113,262 - LRK53_RS00515 0.59 -0.5
113,486 + LRK53_RS00515 0.74 -1.0
113,486 + LRK53_RS00515 0.74 -0.5
113,486 + LRK53_RS00515 0.74 -1.7
113,486 + LRK53_RS00515 0.74 +0.4
113,486 + LRK53_RS00515 0.74 -1.1
113,486 + LRK53_RS00515 0.74 +0.6
113,486 + LRK53_RS00515 0.74 +0.1
113,486 + LRK53_RS00515 0.74 +0.1
113,486 + LRK53_RS00515 0.74 -0.5
113,486 + LRK53_RS00515 0.74 +0.8
113,486 + LRK53_RS00515 0.74 +1.7
113,486 + LRK53_RS00515 0.74 -2.1
113,486 + LRK53_RS00515 0.74 -0.9
113,486 + LRK53_RS00515 0.74 -1.0
113,487 - LRK53_RS00515 0.74 +0.1
113,487 - LRK53_RS00515 0.74 +0.5
113,487 - LRK53_RS00515 0.74 -0.5
113,487 - LRK53_RS00515 0.74 -1.7
113,487 - LRK53_RS00515 0.74 +0.5
113,487 - LRK53_RS00515 0.74 -1.7
113,487 - LRK53_RS00515 0.74 -0.6
113,487 - LRK53_RS00515 0.74 -1.7
113,487 - LRK53_RS00515 0.74 +0.1
113,487 - LRK53_RS00515 0.74 -1.9
113,487 - LRK53_RS00515 0.74 -1.3
113,487 - LRK53_RS00515 0.74 +1.1
113,487 - LRK53_RS00515 0.74 +0.1
113,487 - LRK53_RS00515 0.74 +0.1
113,487 - LRK53_RS00515 0.74 -1.2
113,487 - LRK53_RS00515 0.74 -0.4
113,487 - LRK53_RS00515 0.74 -2.7
113,487 - LRK53_RS00515 0.74 +0.0
113,487 - LRK53_RS00515 0.74 +0.9
113,487 - LRK53_RS00515 0.74 -1.2
113,487 - LRK53_RS00515 0.74 -0.6
113,487 - LRK53_RS00515 0.74 -0.5
113,492 + LRK53_RS00515 0.75 -2.6
113,492 + LRK53_RS00515 0.75 +0.3
113,492 + LRK53_RS00515 0.75 -0.3
113,492 + LRK53_RS00515 0.75 +1.1
113,492 + LRK53_RS00515 0.75 -0.8
113,492 + LRK53_RS00515 0.75 +0.1
113,492 + LRK53_RS00515 0.75 -1.3
113,493 - LRK53_RS00515 0.75 +0.5
113,493 - LRK53_RS00515 0.75 +0.6
113,493 - LRK53_RS00515 0.75 +0.7
113,493 - LRK53_RS00515 0.75 +0.1
113,493 - LRK53_RS00515 0.75 +1.0
113,493 - LRK53_RS00515 0.75 -0.8
113,630 + LRK53_RS00515 0.84 -0.9
113,630 + LRK53_RS00515 0.84 -0.7
113,630 + LRK53_RS00515 0.84 +0.7
113,801 + -1.2
113,801 + -0.3
113,801 + -0.9
113,801 + -2.2
113,801 + -1.2
113,802 - +1.4
113,862 + +1.6
113,862 + -0.1
113,863 - +2.7
114,163 + LRK53_RS00520 0.24 -0.1
114,163 + LRK53_RS00520 0.24 -1.2
114,163 + LRK53_RS00520 0.24 +0.2
114,163 + LRK53_RS00520 0.24 +0.7
114,163 + LRK53_RS00520 0.24 +0.1
114,163 + LRK53_RS00520 0.24 +1.4
114,164 - LRK53_RS00520 0.25 -0.0
114,164 - LRK53_RS00520 0.25 -2.2
114,164 - LRK53_RS00520 0.25 +0.1
114,164 - LRK53_RS00520 0.25 -1.1
114,164 - LRK53_RS00520 0.25 +1.1
114,164 - LRK53_RS00520 0.25 -1.7
114,164 - LRK53_RS00520 0.25 +0.1
114,282 + LRK53_RS00520 0.35 -1.1
114,966 + -1.3
114,967 - -0.2
114,967 - +1.5
115,377 - LRK53_RS00525 0.34 -0.5
115,872 + LRK53_RS00525 0.78 -0.8
115,872 + LRK53_RS00525 0.78 -0.8

Or see this region's nucleotide sequence