Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00500

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00490 and LRK53_RS00495 overlap by 14 nucleotidesLRK53_RS00495 and LRK53_RS00500 are separated by 77 nucleotidesLRK53_RS00500 and LRK53_RS00505 are separated by 3 nucleotides LRK53_RS00490: LRK53_RS00490 - hypothetical protein, at 107,499 to 108,662 _RS00490 LRK53_RS00495: LRK53_RS00495 - Wzz/FepE/Etk N-terminal domain-containing protein, at 108,649 to 109,488 _RS00495 LRK53_RS00500: LRK53_RS00500 - class I SAM-dependent methyltransferase, at 109,566 to 110,408 _RS00500 LRK53_RS00505: LRK53_RS00505 - amidohydrolase family protein, at 110,412 to 111,647 _RS00505 Position (kb) 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 108.667 kb on + strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.668 kb on - strandat 108.748 kb on + strand, within LRK53_RS00495at 108.748 kb on + strand, within LRK53_RS00495at 108.748 kb on + strand, within LRK53_RS00495at 108.748 kb on + strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.749 kb on - strand, within LRK53_RS00495at 108.982 kb on + strand, within LRK53_RS00495at 108.983 kb on - strand, within LRK53_RS00495at 109.019 kb on - strand, within LRK53_RS00495at 109.330 kb on + strand, within LRK53_RS00495at 109.330 kb on + strand, within LRK53_RS00495at 109.330 kb on + strand, within LRK53_RS00495at 109.331 kb on - strand, within LRK53_RS00495at 109.331 kb on - strand, within LRK53_RS00495at 109.336 kb on + strand, within LRK53_RS00495at 109.336 kb on + strand, within LRK53_RS00495at 109.336 kb on + strand, within LRK53_RS00495at 109.336 kb on + strand, within LRK53_RS00495at 109.337 kb on - strand, within LRK53_RS00495at 109.337 kb on - strand, within LRK53_RS00495at 109.337 kb on - strand, within LRK53_RS00495at 109.337 kb on - strand, within LRK53_RS00495at 109.363 kb on + strand, within LRK53_RS00495at 109.363 kb on + strand, within LRK53_RS00495at 109.363 kb on + strand, within LRK53_RS00495at 109.363 kb on + strand, within LRK53_RS00495at 109.364 kb on - strand, within LRK53_RS00495at 109.364 kb on - strand, within LRK53_RS00495at 109.364 kb on - strand, within LRK53_RS00495at 109.364 kb on - strand, within LRK53_RS00495at 109.364 kb on - strand, within LRK53_RS00495at 109.405 kb on + strandat 109.405 kb on + strandat 109.405 kb on + strandat 109.406 kb on - strandat 109.406 kb on - strandat 109.406 kb on - strandat 109.662 kb on + strand, within LRK53_RS00500at 109.662 kb on + strand, within LRK53_RS00500at 109.663 kb on - strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 110.095 kb on - strand, within LRK53_RS00500at 110.095 kb on - strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.191 kb on - strand, within LRK53_RS00500at 110.208 kb on + strand, within LRK53_RS00500at 110.208 kb on + strand, within LRK53_RS00500at 110.209 kb on - strand, within LRK53_RS00500at 110.277 kb on + strand, within LRK53_RS00500at 110.278 kb on - strand, within LRK53_RS00500at 110.655 kb on + strand, within LRK53_RS00505at 110.655 kb on + strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.863 kb on - strand, within LRK53_RS00505

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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108,667 + +0.3
108,667 + -0.9
108,667 + -0.3
108,668 - -0.3
108,748 + LRK53_RS00495 0.12 -1.5
108,748 + LRK53_RS00495 0.12 +0.9
108,748 + LRK53_RS00495 0.12 -1.4
108,748 + LRK53_RS00495 0.12 +2.3
108,749 - LRK53_RS00495 0.12 -0.4
108,749 - LRK53_RS00495 0.12 +1.9
108,749 - LRK53_RS00495 0.12 +0.0
108,749 - LRK53_RS00495 0.12 -0.1
108,749 - LRK53_RS00495 0.12 -1.3
108,749 - LRK53_RS00495 0.12 -0.3
108,749 - LRK53_RS00495 0.12 -0.7
108,749 - LRK53_RS00495 0.12 -0.1
108,982 + LRK53_RS00495 0.40 +0.7
108,983 - LRK53_RS00495 0.40 +0.9
109,019 - LRK53_RS00495 0.44 -1.2
109,330 + LRK53_RS00495 0.81 +0.3
109,330 + LRK53_RS00495 0.81 +0.7
109,330 + LRK53_RS00495 0.81 -1.1
109,331 - LRK53_RS00495 0.81 -0.9
109,331 - LRK53_RS00495 0.81 -0.4
109,336 + LRK53_RS00495 0.82 -0.4
109,336 + LRK53_RS00495 0.82 +0.7
109,336 + LRK53_RS00495 0.82 -0.9
109,336 + LRK53_RS00495 0.82 +0.3
109,337 - LRK53_RS00495 0.82 -0.9
109,337 - LRK53_RS00495 0.82 +0.7
109,337 - LRK53_RS00495 0.82 -0.2
109,337 - LRK53_RS00495 0.82 +0.0
109,363 + LRK53_RS00495 0.85 -0.1
109,363 + LRK53_RS00495 0.85 +0.7
109,363 + LRK53_RS00495 0.85 +0.0
109,363 + LRK53_RS00495 0.85 -0.8
109,364 - LRK53_RS00495 0.85 +0.3
109,364 - LRK53_RS00495 0.85 -0.5
109,364 - LRK53_RS00495 0.85 -0.4
109,364 - LRK53_RS00495 0.85 +0.6
109,364 - LRK53_RS00495 0.85 -0.7
109,405 + -0.7
109,405 + -0.5
109,405 + +1.3
109,406 - +0.3
109,406 - -0.1
109,406 - -0.3
109,662 + LRK53_RS00500 0.11 -0.3
109,662 + LRK53_RS00500 0.11 -1.9
109,663 - LRK53_RS00500 0.12 +0.3
109,959 + LRK53_RS00500 0.47 -1.1
109,959 + LRK53_RS00500 0.47 -2.1
109,959 + LRK53_RS00500 0.47 +0.7
109,959 + LRK53_RS00500 0.47 -1.9
109,959 + LRK53_RS00500 0.47 +0.6
109,959 + LRK53_RS00500 0.47 -0.5
109,959 + LRK53_RS00500 0.47 -1.3
109,959 + LRK53_RS00500 0.47 -2.3
109,959 + LRK53_RS00500 0.47 +2.9
109,959 + LRK53_RS00500 0.47 -1.8
109,960 - LRK53_RS00500 0.47 -0.8
109,960 - LRK53_RS00500 0.47 -0.3
110,095 - LRK53_RS00500 0.63 +1.3
110,095 - LRK53_RS00500 0.63 -0.6
110,187 + LRK53_RS00500 0.74 -2.9
110,187 + LRK53_RS00500 0.74 +0.3
110,187 + LRK53_RS00500 0.74 -1.3
110,188 - LRK53_RS00500 0.74 -1.3
110,188 - LRK53_RS00500 0.74 +0.0
110,188 - LRK53_RS00500 0.74 -1.1
110,190 + LRK53_RS00500 0.74 -1.5
110,190 + LRK53_RS00500 0.74 +0.3
110,190 + LRK53_RS00500 0.74 +0.1
110,191 - LRK53_RS00500 0.74 +0.3
110,208 + LRK53_RS00500 0.76 -1.0
110,208 + LRK53_RS00500 0.76 -1.1
110,209 - LRK53_RS00500 0.76 +0.7
110,277 + LRK53_RS00500 0.84 -0.7
110,278 - LRK53_RS00500 0.84 -0.1
110,655 + LRK53_RS00505 0.20 +0.3
110,655 + LRK53_RS00505 0.20 -0.7
110,656 - LRK53_RS00505 0.20 -0.1
110,656 - LRK53_RS00505 0.20 +1.3
110,656 - LRK53_RS00505 0.20 -0.2
110,656 - LRK53_RS00505 0.20 -1.2
110,656 - LRK53_RS00505 0.20 -0.2
110,656 - LRK53_RS00505 0.20 -1.5
110,863 - LRK53_RS00505 0.36 +2.3

Or see this region's nucleotide sequence