Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00460

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00450 and LRK53_RS00455 are separated by 377 nucleotidesLRK53_RS00455 and LRK53_RS00460 overlap by 16 nucleotidesLRK53_RS00460 and LRK53_RS00465 are separated by 7 nucleotidesLRK53_RS00465 and LRK53_RS00470 overlap by 14 nucleotides LRK53_RS00450: LRK53_RS00450 - hypothetical protein, at 100,031 to 100,828 _RS00450 LRK53_RS00455: LRK53_RS00455 - FdtA/QdtA family cupin domain-containing protein, at 101,206 to 101,643 _RS00455 LRK53_RS00460: LRK53_RS00460 - acetyltransferase, at 101,628 to 102,293 _RS00460 LRK53_RS00465: LRK53_RS00465 - hypothetical protein, at 102,301 to 103,248 _RS00465 LRK53_RS00470: LRK53_RS00470 - GNAT family N-acetyltransferase, at 103,235 to 104,167 _RS00470 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.560 kb on + strand, within LRK53_RS00455at 101.560 kb on + strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.608 kb on + strandat 101.609 kb on - strandat 101.609 kb on - strandat 101.641 kb on + strandat 101.641 kb on + strandat 101.685 kb on + strandat 101.685 kb on + strandat 101.686 kb on - strandat 101.686 kb on - strandat 101.739 kb on + strand, within LRK53_RS00460at 101.739 kb on + strand, within LRK53_RS00460at 101.740 kb on - strand, within LRK53_RS00460at 101.781 kb on + strand, within LRK53_RS00460at 101.781 kb on + strand, within LRK53_RS00460at 101.782 kb on - strand, within LRK53_RS00460at 101.782 kb on - strand, within LRK53_RS00460at 101.802 kb on + strand, within LRK53_RS00460at 101.874 kb on + strand, within LRK53_RS00460at 101.874 kb on + strand, within LRK53_RS00460at 101.874 kb on + strand, within LRK53_RS00460at 101.875 kb on - strand, within LRK53_RS00460at 101.875 kb on - strand, within LRK53_RS00460at 101.913 kb on + strand, within LRK53_RS00460at 101.913 kb on + strand, within LRK53_RS00460at 101.913 kb on + strand, within LRK53_RS00460at 101.913 kb on + strand, within LRK53_RS00460at 101.913 kb on + strand, within LRK53_RS00460at 101.914 kb on - strand, within LRK53_RS00460at 101.914 kb on - strand, within LRK53_RS00460at 101.914 kb on - strand, within LRK53_RS00460at 101.914 kb on - strand, within LRK53_RS00460at 102.234 kb on + strandat 102.234 kb on + strandat 102.235 kb on - strandat 102.235 kb on - strandat 102.235 kb on - strandat 102.235 kb on - strandat 102.424 kb on + strand, within LRK53_RS00465at 102.424 kb on + strand, within LRK53_RS00465at 102.467 kb on - strand, within LRK53_RS00465at 102.476 kb on + strand, within LRK53_RS00465at 102.476 kb on + strand, within LRK53_RS00465at 102.476 kb on + strand, within LRK53_RS00465at 102.477 kb on - strand, within LRK53_RS00465at 102.477 kb on - strand, within LRK53_RS00465at 102.477 kb on - strand, within LRK53_RS00465at 102.613 kb on + strand, within LRK53_RS00465at 102.614 kb on - strand, within LRK53_RS00465at 102.614 kb on - strand, within LRK53_RS00465at 102.614 kb on - strand, within LRK53_RS00465at 102.614 kb on - strand, within LRK53_RS00465at 102.614 kb on - strand, within LRK53_RS00465at 102.762 kb on + strand, within LRK53_RS00465at 102.762 kb on + strand, within LRK53_RS00465at 102.762 kb on + strand, within LRK53_RS00465at 102.763 kb on - strand, within LRK53_RS00465at 102.763 kb on - strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.772 kb on + strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.773 kb on - strand, within LRK53_RS00465at 102.799 kb on + strand, within LRK53_RS00465at 102.851 kb on - strand, within LRK53_RS00465at 102.851 kb on - strand, within LRK53_RS00465at 102.959 kb on - strand, within LRK53_RS00465at 102.965 kb on - strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.985 kb on + strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 102.986 kb on - strand, within LRK53_RS00465at 103.015 kb on + strand, within LRK53_RS00465at 103.015 kb on + strand, within LRK53_RS00465at 103.015 kb on + strand, within LRK53_RS00465at 103.016 kb on - strand, within LRK53_RS00465at 103.016 kb on - strand, within LRK53_RS00465at 103.016 kb on - strand, within LRK53_RS00465at 103.164 kb on - strandat 103.165 kb on + strandat 103.165 kb on + strandat 103.165 kb on + strandat 103.165 kb on + strandat 103.165 kb on + strandat 103.165 kb on + strandat 103.166 kb on - strandat 103.166 kb on - strandat 103.166 kb on - strandat 103.253 kb on + strandat 103.253 kb on + strandat 103.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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100,950 + +0.3
100,950 + -2.2
100,950 + -2.2
100,950 + +1.3
100,950 + -0.1
100,951 - -1.3
100,951 - +0.4
100,951 - -1.1
100,951 - +1.3
100,951 - -0.7
100,951 - -0.7
100,951 - -0.6
101,308 + LRK53_RS00455 0.23 -0.9
101,308 + LRK53_RS00455 0.23 +0.3
101,308 + LRK53_RS00455 0.23 -0.8
101,308 + LRK53_RS00455 0.23 +1.3
101,308 + LRK53_RS00455 0.23 -0.6
101,309 - LRK53_RS00455 0.24 +0.3
101,309 - LRK53_RS00455 0.24 -1.2
101,309 - LRK53_RS00455 0.24 -1.3
101,309 - LRK53_RS00455 0.24 -0.0
101,309 - LRK53_RS00455 0.24 -1.1
101,309 - LRK53_RS00455 0.24 -0.7
101,309 - LRK53_RS00455 0.24 +0.3
101,309 - LRK53_RS00455 0.24 -0.3
101,309 - LRK53_RS00455 0.24 -0.7
101,311 + LRK53_RS00455 0.24 +0.3
101,311 + LRK53_RS00455 0.24 -1.1
101,311 + LRK53_RS00455 0.24 -0.7
101,312 - LRK53_RS00455 0.24 -0.5
101,312 - LRK53_RS00455 0.24 -1.1
101,312 - LRK53_RS00455 0.24 -1.1
101,312 - LRK53_RS00455 0.24 -0.3
101,312 - LRK53_RS00455 0.24 -0.1
101,312 - LRK53_RS00455 0.24 +1.6
101,497 + LRK53_RS00455 0.66 +0.2
101,497 + LRK53_RS00455 0.66 +0.3
101,497 + LRK53_RS00455 0.66 +1.9
101,497 + LRK53_RS00455 0.66 -2.5
101,497 + LRK53_RS00455 0.66 -0.4
101,497 + LRK53_RS00455 0.66 -0.2
101,497 + LRK53_RS00455 0.66 -0.6
101,497 + LRK53_RS00455 0.66 -0.5
101,497 + LRK53_RS00455 0.66 +0.8
101,498 - LRK53_RS00455 0.67 -1.5
101,498 - LRK53_RS00455 0.67 -1.1
101,498 - LRK53_RS00455 0.67 +0.9
101,498 - LRK53_RS00455 0.67 -2.1
101,498 - LRK53_RS00455 0.67 +0.1
101,498 - LRK53_RS00455 0.67 -0.6
101,545 + LRK53_RS00455 0.77 -0.2
101,545 + LRK53_RS00455 0.77 -0.7
101,545 + LRK53_RS00455 0.77 +0.7
101,545 + LRK53_RS00455 0.77 +0.9
101,545 + LRK53_RS00455 0.77 -0.1
101,545 + LRK53_RS00455 0.77 -0.1
101,545 + LRK53_RS00455 0.77 -0.6
101,545 + LRK53_RS00455 0.77 -1.1
101,546 - LRK53_RS00455 0.78 -0.5
101,546 - LRK53_RS00455 0.78 +0.2
101,546 - LRK53_RS00455 0.78 -0.8
101,546 - LRK53_RS00455 0.78 -0.1
101,546 - LRK53_RS00455 0.78 -0.1
101,546 - LRK53_RS00455 0.78 -2.5
101,546 - LRK53_RS00455 0.78 -0.3
101,560 + LRK53_RS00455 0.81 +2.3
101,560 + LRK53_RS00455 0.81 -0.3
101,561 - LRK53_RS00455 0.81 +0.0
101,561 - LRK53_RS00455 0.81 -0.1
101,561 - LRK53_RS00455 0.81 +1.3
101,561 - LRK53_RS00455 0.81 -0.1
101,608 + -0.6
101,609 - -1.3
101,609 - -0.3
101,641 + -0.8
101,641 + +1.2
101,685 + -0.4
101,685 + -0.2
101,686 - -1.1
101,686 - -0.6
101,739 + LRK53_RS00460 0.17 -0.3
101,739 + LRK53_RS00460 0.17 +2.3
101,740 - LRK53_RS00460 0.17 +0.3
101,781 + LRK53_RS00460 0.23 -0.7
101,781 + LRK53_RS00460 0.23 -0.7
101,782 - LRK53_RS00460 0.23 -1.7
101,782 - LRK53_RS00460 0.23 -0.3
101,802 + LRK53_RS00460 0.26 -0.3
101,874 + LRK53_RS00460 0.37 +0.0
101,874 + LRK53_RS00460 0.37 -1.3
101,874 + LRK53_RS00460 0.37 -1.9
101,875 - LRK53_RS00460 0.37 -1.7
101,875 - LRK53_RS00460 0.37 +0.3
101,913 + LRK53_RS00460 0.43 -2.5
101,913 + LRK53_RS00460 0.43 -0.9
101,913 + LRK53_RS00460 0.43 -1.8
101,913 + LRK53_RS00460 0.43 -0.3
101,913 + LRK53_RS00460 0.43 -1.3
101,914 - LRK53_RS00460 0.43 -1.7
101,914 - LRK53_RS00460 0.43 -0.1
101,914 - LRK53_RS00460 0.43 +0.2
101,914 - LRK53_RS00460 0.43 +0.1
102,234 + -0.7
102,234 + -0.1
102,235 - -2.4
102,235 - +0.0
102,235 - -1.4
102,235 - +0.3
102,424 + LRK53_RS00465 0.13 +0.9
102,424 + LRK53_RS00465 0.13 -0.1
102,467 - LRK53_RS00465 0.18 -1.7
102,476 + LRK53_RS00465 0.18 -1.5
102,476 + LRK53_RS00465 0.18 +1.1
102,476 + LRK53_RS00465 0.18 +1.3
102,477 - LRK53_RS00465 0.19 -0.2
102,477 - LRK53_RS00465 0.19 +0.5
102,477 - LRK53_RS00465 0.19 +0.6
102,613 + LRK53_RS00465 0.33 +1.6
102,614 - LRK53_RS00465 0.33 +1.4
102,614 - LRK53_RS00465 0.33 +2.3
102,614 - LRK53_RS00465 0.33 -0.5
102,614 - LRK53_RS00465 0.33 +3.9
102,614 - LRK53_RS00465 0.33 +1.9
102,762 + LRK53_RS00465 0.49 -0.3
102,762 + LRK53_RS00465 0.49 -1.3
102,762 + LRK53_RS00465 0.49 -2.8
102,763 - LRK53_RS00465 0.49 +1.3
102,763 - LRK53_RS00465 0.49 +0.3
102,772 + LRK53_RS00465 0.50 +0.1
102,772 + LRK53_RS00465 0.50 -0.3
102,772 + LRK53_RS00465 0.50 -0.3
102,772 + LRK53_RS00465 0.50 +0.3
102,772 + LRK53_RS00465 0.50 -0.9
102,772 + LRK53_RS00465 0.50 -0.3
102,773 - LRK53_RS00465 0.50 -1.1
102,773 - LRK53_RS00465 0.50 +0.7
102,773 - LRK53_RS00465 0.50 +3.3
102,773 - LRK53_RS00465 0.50 -1.3
102,773 - LRK53_RS00465 0.50 +1.1
102,773 - LRK53_RS00465 0.50 +0.3
102,773 - LRK53_RS00465 0.50 -0.5
102,799 + LRK53_RS00465 0.53 -1.0
102,851 - LRK53_RS00465 0.58 -1.7
102,851 - LRK53_RS00465 0.58 +0.2
102,959 - LRK53_RS00465 0.69 +1.3
102,965 - LRK53_RS00465 0.70 -0.3
102,985 + LRK53_RS00465 0.72 -1.4
102,985 + LRK53_RS00465 0.72 +1.4
102,985 + LRK53_RS00465 0.72 -0.8
102,985 + LRK53_RS00465 0.72 +0.0
102,985 + LRK53_RS00465 0.72 -2.7
102,985 + LRK53_RS00465 0.72 -0.3
102,986 - LRK53_RS00465 0.72 -0.7
102,986 - LRK53_RS00465 0.72 -0.7
102,986 - LRK53_RS00465 0.72 -0.3
102,986 - LRK53_RS00465 0.72 +1.3
102,986 - LRK53_RS00465 0.72 -0.3
102,986 - LRK53_RS00465 0.72 -2.5
102,986 - LRK53_RS00465 0.72 -0.1
102,986 - LRK53_RS00465 0.72 +0.0
102,986 - LRK53_RS00465 0.72 +0.9
103,015 + LRK53_RS00465 0.75 -0.3
103,015 + LRK53_RS00465 0.75 -0.5
103,015 + LRK53_RS00465 0.75 +1.3
103,016 - LRK53_RS00465 0.75 -0.8
103,016 - LRK53_RS00465 0.75 -2.1
103,016 - LRK53_RS00465 0.75 +1.6
103,164 - -0.6
103,165 + +0.7
103,165 + +1.3
103,165 + -0.5
103,165 + +3.3
103,165 + -0.7
103,165 + -0.3
103,166 - +0.5
103,166 - -2.3
103,166 - -0.6
103,253 + +0.3
103,253 + -0.3
103,254 - -1.7

Or see this region's nucleotide sequence