Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06890 and LRK53_RS06895 are separated by 75 nucleotides LRK53_RS06895 and LRK53_RS06900 are separated by 1 nucleotides LRK53_RS06900 and LRK53_RS06905 are separated by 301 nucleotides
LRK53_RS06890: LRK53_RS06890 - cysteine desulfurase, at 1,555,621 to 1,556,865
_RS06890
LRK53_RS06895: LRK53_RS06895 - acyltransferase, at 1,556,941 to 1,557,855
_RS06895
LRK53_RS06900: LRK53_RS06900 - 2-dehydropantoate 2-reductase, at 1,557,857 to 1,558,777
_RS06900
LRK53_RS06905: LRK53_RS06905 - M13 family peptidase, at 1,559,079 to 1,561,115
_RS06905
Position (kb) 1557
1558
1559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.129 kb on + strand, within LRK53_RS06895 at 1557.130 kb on - strand, within LRK53_RS06895 at 1557.130 kb on - strand, within LRK53_RS06895 at 1557.130 kb on - strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.205 kb on + strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.206 kb on - strand, within LRK53_RS06895 at 1557.370 kb on + strand, within LRK53_RS06895 at 1557.370 kb on + strand, within LRK53_RS06895 at 1557.370 kb on + strand, within LRK53_RS06895 at 1557.370 kb on + strand, within LRK53_RS06895 at 1557.371 kb on - strand, within LRK53_RS06895 at 1557.733 kb on + strand, within LRK53_RS06895 at 1557.733 kb on + strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.734 kb on - strand, within LRK53_RS06895 at 1557.862 kb on + strand at 1557.862 kb on + strand at 1557.862 kb on + strand at 1557.862 kb on + strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.863 kb on - strand at 1557.873 kb on + strand at 1557.874 kb on - strand at 1557.896 kb on + strand at 1557.896 kb on + strand at 1557.896 kb on + strand at 1557.897 kb on - strand at 1558.061 kb on + strand, within LRK53_RS06900 at 1558.061 kb on + strand, within LRK53_RS06900 at 1558.062 kb on - strand, within LRK53_RS06900 at 1558.062 kb on - strand, within LRK53_RS06900 at 1558.062 kb on - strand, within LRK53_RS06900 at 1558.062 kb on - strand, within LRK53_RS06900 at 1558.092 kb on - strand, within LRK53_RS06900 at 1558.092 kb on - strand, within LRK53_RS06900 at 1558.179 kb on + strand, within LRK53_RS06900 at 1558.179 kb on + strand, within LRK53_RS06900 at 1558.179 kb on + strand, within LRK53_RS06900 at 1558.179 kb on + strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.180 kb on - strand, within LRK53_RS06900 at 1558.233 kb on + strand, within LRK53_RS06900 at 1558.233 kb on + strand, within LRK53_RS06900 at 1558.234 kb on - strand, within LRK53_RS06900 at 1558.234 kb on - strand, within LRK53_RS06900 at 1558.739 kb on + strand at 1558.740 kb on - strand at 1558.740 kb on - strand at 1558.740 kb on - strand at 1558.740 kb on - strand at 1558.740 kb on - strand at 1558.757 kb on + strand at 1558.757 kb on + strand at 1558.757 kb on + strand at 1558.757 kb on + strand at 1558.758 kb on - strand at 1558.758 kb on - strand at 1558.758 kb on - strand at 1558.789 kb on + strand at 1558.789 kb on + strand at 1558.789 kb on + strand at 1558.790 kb on - strand at 1558.790 kb on - strand at 1558.882 kb on + strand at 1558.883 kb on - strand at 1558.883 kb on - strand at 1558.929 kb on + strand at 1558.929 kb on + strand at 1558.929 kb on + strand at 1559.060 kb on + strand at 1559.080 kb on + strand at 1559.299 kb on + strand, within LRK53_RS06905 at 1559.299 kb on + strand, within LRK53_RS06905 at 1559.300 kb on - strand, within LRK53_RS06905 at 1559.300 kb on - strand, within LRK53_RS06905 at 1559.362 kb on + strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.363 kb on - strand, within LRK53_RS06905 at 1559.447 kb on - strand, within LRK53_RS06905 at 1559.563 kb on + strand, within LRK53_RS06905 at 1559.563 kb on + strand, within LRK53_RS06905 at 1559.563 kb on + strand, within LRK53_RS06905 at 1559.608 kb on + strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.609 kb on - strand, within LRK53_RS06905 at 1559.695 kb on + strand, within LRK53_RS06905 at 1559.695 kb on + strand, within LRK53_RS06905 at 1559.695 kb on + strand, within LRK53_RS06905 at 1559.695 kb on + strand, within LRK53_RS06905 at 1559.695 kb on + strand, within LRK53_RS06905 at 1559.696 kb on - strand, within LRK53_RS06905 at 1559.696 kb on - strand, within LRK53_RS06905 at 1559.696 kb on - strand, within LRK53_RS06905 at 1559.696 kb on - strand, within LRK53_RS06905 at 1559.696 kb on - strand, within LRK53_RS06905 at 1559.698 kb on + strand, within LRK53_RS06905 at 1559.698 kb on + strand, within LRK53_RS06905 at 1559.699 kb on - strand, within LRK53_RS06905 at 1559.699 kb on - strand, within LRK53_RS06905 at 1559.770 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.776 kb on + strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905 at 1559.777 kb on - strand, within LRK53_RS06905
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,556,907 + -0.0 1,556,907 + +1.5 1,556,907 + -1.9 1,556,907 + +1.9 1,556,907 + -1.1 1,556,907 + -1.8 1,556,907 + +0.6 1,556,907 + +0.9 1,556,908 - -0.1 1,556,908 - +0.2 1,556,908 - -0.1 1,556,908 - +0.3 1,556,908 - +0.7 1,556,908 - -0.7 1,556,908 - -0.4 1,556,908 - +0.6 1,556,908 - -0.5 1,556,908 - +0.9 1,556,908 - -1.2 1,556,908 - -0.7 1,556,908 - -1.1 1,556,908 - +0.5 1,557,129 + LRK53_RS06895 0.21 +0.2 1,557,129 + LRK53_RS06895 0.21 +0.6 1,557,129 + LRK53_RS06895 0.21 +0.6 1,557,129 + LRK53_RS06895 0.21 -0.5 1,557,129 + LRK53_RS06895 0.21 -0.1 1,557,129 + LRK53_RS06895 0.21 -0.4 1,557,130 - LRK53_RS06895 0.21 +0.8 1,557,130 - LRK53_RS06895 0.21 -0.5 1,557,130 - LRK53_RS06895 0.21 -0.4 1,557,205 + LRK53_RS06895 0.29 -3.2 1,557,205 + LRK53_RS06895 0.29 +0.5 1,557,205 + LRK53_RS06895 0.29 -0.7 1,557,205 + LRK53_RS06895 0.29 -0.3 1,557,205 + LRK53_RS06895 0.29 -0.1 1,557,205 + LRK53_RS06895 0.29 -0.2 1,557,205 + LRK53_RS06895 0.29 -1.0 1,557,205 + LRK53_RS06895 0.29 -1.7 1,557,205 + LRK53_RS06895 0.29 -1.7 1,557,205 + LRK53_RS06895 0.29 -0.9 1,557,205 + LRK53_RS06895 0.29 -0.2 1,557,206 - LRK53_RS06895 0.29 -1.9 1,557,206 - LRK53_RS06895 0.29 -1.7 1,557,206 - LRK53_RS06895 0.29 +0.3 1,557,206 - LRK53_RS06895 0.29 +0.1 1,557,206 - LRK53_RS06895 0.29 +0.2 1,557,206 - LRK53_RS06895 0.29 +2.5 1,557,206 - LRK53_RS06895 0.29 -0.7 1,557,206 - LRK53_RS06895 0.29 -0.1 1,557,206 - LRK53_RS06895 0.29 -0.2 1,557,206 - LRK53_RS06895 0.29 -0.3 1,557,206 - LRK53_RS06895 0.29 -0.2 1,557,206 - LRK53_RS06895 0.29 -0.3 1,557,206 - LRK53_RS06895 0.29 +1.1 1,557,206 - LRK53_RS06895 0.29 -0.1 1,557,206 - LRK53_RS06895 0.29 -1.2 1,557,206 - LRK53_RS06895 0.29 -0.4 1,557,206 - LRK53_RS06895 0.29 +0.9 1,557,206 - LRK53_RS06895 0.29 -0.1 1,557,370 + LRK53_RS06895 0.47 -2.5 1,557,370 + LRK53_RS06895 0.47 -1.2 1,557,370 + LRK53_RS06895 0.47 +1.5 1,557,370 + LRK53_RS06895 0.47 -1.9 1,557,371 - LRK53_RS06895 0.47 -1.5 1,557,733 + LRK53_RS06895 0.87 +1.2 1,557,733 + LRK53_RS06895 0.87 -0.1 1,557,734 - LRK53_RS06895 0.87 -0.9 1,557,734 - LRK53_RS06895 0.87 -2.2 1,557,734 - LRK53_RS06895 0.87 -1.4 1,557,734 - LRK53_RS06895 0.87 -0.4 1,557,734 - LRK53_RS06895 0.87 +0.9 1,557,734 - LRK53_RS06895 0.87 +0.6 1,557,734 - LRK53_RS06895 0.87 -0.1 1,557,862 + -0.9 1,557,862 + +1.5 1,557,862 + -1.1 1,557,862 + -1.1 1,557,863 - -0.7 1,557,863 - +0.9 1,557,863 - -0.1 1,557,863 - +0.2 1,557,863 - -2.2 1,557,863 - +0.8 1,557,863 - +0.7 1,557,863 - -1.0 1,557,863 - -0.0 1,557,863 - -1.1 1,557,863 - +1.2 1,557,873 + -1.4 1,557,874 - -1.0 1,557,896 + -0.7 1,557,896 + +0.9 1,557,896 + -0.1 1,557,897 - -0.7 1,558,061 + LRK53_RS06900 0.22 +0.2 1,558,061 + LRK53_RS06900 0.22 +1.1 1,558,062 - LRK53_RS06900 0.22 -0.9 1,558,062 - LRK53_RS06900 0.22 -0.5 1,558,062 - LRK53_RS06900 0.22 -0.4 1,558,062 - LRK53_RS06900 0.22 +0.7 1,558,092 - LRK53_RS06900 0.26 -1.9 1,558,092 - LRK53_RS06900 0.26 -0.5 1,558,179 + LRK53_RS06900 0.35 -1.2 1,558,179 + LRK53_RS06900 0.35 -1.4 1,558,179 + LRK53_RS06900 0.35 -0.2 1,558,179 + LRK53_RS06900 0.35 -0.9 1,558,180 - LRK53_RS06900 0.35 -1.1 1,558,180 - LRK53_RS06900 0.35 -0.4 1,558,180 - LRK53_RS06900 0.35 +0.6 1,558,180 - LRK53_RS06900 0.35 +0.7 1,558,180 - LRK53_RS06900 0.35 -0.7 1,558,180 - LRK53_RS06900 0.35 -0.4 1,558,180 - LRK53_RS06900 0.35 +0.1 1,558,233 + LRK53_RS06900 0.41 +0.3 1,558,233 + LRK53_RS06900 0.41 +1.1 1,558,234 - LRK53_RS06900 0.41 -1.7 1,558,234 - LRK53_RS06900 0.41 +0.5 1,558,739 + -0.1 1,558,740 - +0.6 1,558,740 - +0.3 1,558,740 - -0.4 1,558,740 - -0.8 1,558,740 - -3.8 1,558,757 + -1.1 1,558,757 + -0.7 1,558,757 + -0.9 1,558,757 + +1.8 1,558,758 - +0.3 1,558,758 - -1.9 1,558,758 - +2.1 1,558,789 + -1.9 1,558,789 + +3.9 1,558,789 + -0.1 1,558,790 - -0.3 1,558,790 - -0.5 1,558,882 + -3.1 1,558,883 - -0.8 1,558,883 - +0.1 1,558,929 + -2.8 1,558,929 + -0.1 1,558,929 + -1.2 1,559,060 + -0.4 1,559,080 + -0.1 1,559,299 + LRK53_RS06905 0.11 -1.1 1,559,299 + LRK53_RS06905 0.11 -0.2 1,559,300 - LRK53_RS06905 0.11 -2.1 1,559,300 - LRK53_RS06905 0.11 +1.5 1,559,362 + LRK53_RS06905 0.14 -0.3 1,559,363 - LRK53_RS06905 0.14 -1.7 1,559,363 - LRK53_RS06905 0.14 -1.0 1,559,363 - LRK53_RS06905 0.14 -1.0 1,559,363 - LRK53_RS06905 0.14 -0.8 1,559,363 - LRK53_RS06905 0.14 -1.1 1,559,363 - LRK53_RS06905 0.14 -2.4 1,559,447 - LRK53_RS06905 0.18 -0.7 1,559,563 + LRK53_RS06905 0.24 -1.7 1,559,563 + LRK53_RS06905 0.24 +0.1 1,559,563 + LRK53_RS06905 0.24 +0.1 1,559,608 + LRK53_RS06905 0.26 -0.8 1,559,609 - LRK53_RS06905 0.26 -0.1 1,559,609 - LRK53_RS06905 0.26 -0.4 1,559,609 - LRK53_RS06905 0.26 +0.5 1,559,609 - LRK53_RS06905 0.26 +0.4 1,559,609 - LRK53_RS06905 0.26 -0.7 1,559,609 - LRK53_RS06905 0.26 -1.3 1,559,609 - LRK53_RS06905 0.26 -1.6 1,559,609 - LRK53_RS06905 0.26 +0.2 1,559,695 + LRK53_RS06905 0.30 -0.3 1,559,695 + LRK53_RS06905 0.30 +0.3 1,559,695 + LRK53_RS06905 0.30 +2.4 1,559,695 + LRK53_RS06905 0.30 -0.7 1,559,695 + LRK53_RS06905 0.30 -0.5 1,559,696 - LRK53_RS06905 0.30 +0.3 1,559,696 - LRK53_RS06905 0.30 -1.2 1,559,696 - LRK53_RS06905 0.30 -0.1 1,559,696 - LRK53_RS06905 0.30 +0.3 1,559,696 - LRK53_RS06905 0.30 -1.4 1,559,698 + LRK53_RS06905 0.30 -0.7 1,559,698 + LRK53_RS06905 0.30 +1.9 1,559,699 - LRK53_RS06905 0.30 +0.9 1,559,699 - LRK53_RS06905 0.30 -0.2 1,559,770 + LRK53_RS06905 0.34 -0.2 1,559,776 + LRK53_RS06905 0.34 -0.3 1,559,776 + LRK53_RS06905 0.34 +0.3 1,559,776 + LRK53_RS06905 0.34 +1.7 1,559,776 + LRK53_RS06905 0.34 -2.1 1,559,776 + LRK53_RS06905 0.34 +0.0 1,559,776 + LRK53_RS06905 0.34 +0.3 1,559,776 + LRK53_RS06905 0.34 -0.2 1,559,777 - LRK53_RS06905 0.34 +0.3 1,559,777 - LRK53_RS06905 0.34 +0.2 1,559,777 - LRK53_RS06905 0.34 -0.7 1,559,777 - LRK53_RS06905 0.34 +0.6 1,559,777 - LRK53_RS06905 0.34 -0.5 1,559,777 - LRK53_RS06905 0.34 +0.9
Or see this region's nucleotide sequence