Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04085

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04080 and LRK53_RS04085 are separated by 92 nucleotidesLRK53_RS04085 and LRK53_RS04090 are separated by 90 nucleotides LRK53_RS04080: LRK53_RS04080 - MFS transporter, at 958,819 to 960,423 _RS04080 LRK53_RS04085: LRK53_RS04085 - hypothetical protein, at 960,516 to 960,845 _RS04085 LRK53_RS04090: LRK53_RS04090 - family 43 glycosylhydrolase, at 960,936 to 962,789 _RS04090 Position (kb) 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 959.536 kb on + strand, within LRK53_RS04080at 959.536 kb on + strand, within LRK53_RS04080at 959.536 kb on + strand, within LRK53_RS04080at 959.536 kb on + strand, within LRK53_RS04080at 959.537 kb on - strand, within LRK53_RS04080at 959.597 kb on + strand, within LRK53_RS04080at 959.597 kb on + strand, within LRK53_RS04080at 959.597 kb on + strand, within LRK53_RS04080at 959.597 kb on + strand, within LRK53_RS04080at 959.598 kb on - strand, within LRK53_RS04080at 959.598 kb on - strand, within LRK53_RS04080at 959.705 kb on + strand, within LRK53_RS04080at 959.706 kb on - strand, within LRK53_RS04080at 960.026 kb on + strand, within LRK53_RS04080at 960.027 kb on - strand, within LRK53_RS04080at 960.027 kb on - strand, within LRK53_RS04080at 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.440 kb on + strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.441 kb on - strandat 960.455 kb on + strandat 960.500 kb on + strandat 960.500 kb on + strandat 960.501 kb on - strandat 960.501 kb on - strandat 960.501 kb on - strandat 960.501 kb on - strandat 960.610 kb on - strand, within LRK53_RS04085at 960.632 kb on - strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.637 kb on + strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.638 kb on - strand, within LRK53_RS04085at 960.688 kb on + strand, within LRK53_RS04085at 960.746 kb on + strand, within LRK53_RS04085at 960.746 kb on + strand, within LRK53_RS04085at 960.747 kb on - strand, within LRK53_RS04085at 960.747 kb on - strand, within LRK53_RS04085at 960.747 kb on - strand, within LRK53_RS04085at 960.901 kb on + strandat 960.902 kb on - strandat 961.009 kb on + strandat 961.009 kb on + strandat 961.009 kb on + strandat 961.010 kb on - strandat 961.010 kb on - strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.072 kb on + strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.073 kb on - strandat 961.118 kb on - strandat 961.118 kb on - strandat 961.285 kb on + strand, within LRK53_RS04090at 961.285 kb on + strand, within LRK53_RS04090at 961.285 kb on + strand, within LRK53_RS04090at 961.286 kb on - strand, within LRK53_RS04090at 961.286 kb on - strand, within LRK53_RS04090at 961.286 kb on - strand, within LRK53_RS04090at 961.286 kb on - strand, within LRK53_RS04090at 961.328 kb on - strand, within LRK53_RS04090at 961.456 kb on + strand, within LRK53_RS04090at 961.465 kb on + strand, within LRK53_RS04090at 961.466 kb on - strand, within LRK53_RS04090

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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959,536 + LRK53_RS04080 0.45 -0.5
959,536 + LRK53_RS04080 0.45 -1.2
959,536 + LRK53_RS04080 0.45 +2.0
959,536 + LRK53_RS04080 0.45 +0.4
959,537 - LRK53_RS04080 0.45 -0.4
959,597 + LRK53_RS04080 0.48 +0.6
959,597 + LRK53_RS04080 0.48 +2.0
959,597 + LRK53_RS04080 0.48 -1.0
959,597 + LRK53_RS04080 0.48 -2.0
959,598 - LRK53_RS04080 0.49 -0.2
959,598 - LRK53_RS04080 0.49 -0.2
959,705 + LRK53_RS04080 0.55 -0.6
959,706 - LRK53_RS04080 0.55 -1.2
960,026 + LRK53_RS04080 0.75 -1.8
960,027 - LRK53_RS04080 0.75 +1.7
960,027 - LRK53_RS04080 0.75 -0.1
960,440 + -1.2
960,440 + +0.4
960,440 + +1.0
960,440 + -1.4
960,440 + -1.0
960,440 + +0.5
960,440 + +1.0
960,440 + -0.1
960,440 + -0.2
960,440 + -1.8
960,440 + -2.0
960,440 + -1.4
960,440 + +1.5
960,440 + +2.0
960,440 + +0.6
960,440 + -0.3
960,441 - -1.2
960,441 - -0.6
960,441 - -0.6
960,441 - -1.0
960,441 - +0.6
960,441 - -0.2
960,441 - +1.0
960,441 - -0.7
960,441 - -0.3
960,441 - +0.4
960,441 - -2.0
960,441 - -0.5
960,441 - -2.5
960,441 - -1.7
960,441 - +1.0
960,455 + -1.0
960,500 + -0.0
960,500 + +0.1
960,501 - -1.0
960,501 - +1.0
960,501 - +0.3
960,501 - +2.8
960,610 - LRK53_RS04085 0.28 -0.6
960,632 - LRK53_RS04085 0.35 +0.4
960,637 + LRK53_RS04085 0.37 -1.3
960,637 + LRK53_RS04085 0.37 -1.0
960,637 + LRK53_RS04085 0.37 -0.4
960,637 + LRK53_RS04085 0.37 -1.4
960,637 + LRK53_RS04085 0.37 +1.7
960,637 + LRK53_RS04085 0.37 +1.0
960,637 + LRK53_RS04085 0.37 +0.7
960,637 + LRK53_RS04085 0.37 +2.0
960,637 + LRK53_RS04085 0.37 -1.9
960,637 + LRK53_RS04085 0.37 -0.2
960,637 + LRK53_RS04085 0.37 +0.8
960,637 + LRK53_RS04085 0.37 +0.4
960,637 + LRK53_RS04085 0.37 -1.3
960,637 + LRK53_RS04085 0.37 -0.6
960,638 - LRK53_RS04085 0.37 +1.0
960,638 - LRK53_RS04085 0.37 +1.3
960,638 - LRK53_RS04085 0.37 +0.7
960,638 - LRK53_RS04085 0.37 -0.6
960,638 - LRK53_RS04085 0.37 +2.5
960,638 - LRK53_RS04085 0.37 -1.9
960,638 - LRK53_RS04085 0.37 +0.1
960,638 - LRK53_RS04085 0.37 +2.0
960,638 - LRK53_RS04085 0.37 -0.0
960,638 - LRK53_RS04085 0.37 +1.0
960,638 - LRK53_RS04085 0.37 +0.5
960,638 - LRK53_RS04085 0.37 -0.4
960,638 - LRK53_RS04085 0.37 -0.9
960,688 + LRK53_RS04085 0.52 -0.0
960,746 + LRK53_RS04085 0.70 -0.4
960,746 + LRK53_RS04085 0.70 +0.7
960,747 - LRK53_RS04085 0.70 -0.0
960,747 - LRK53_RS04085 0.70 +0.1
960,747 - LRK53_RS04085 0.70 -0.9
960,901 + -1.2
960,902 - -0.6
961,009 + +0.3
961,009 + -1.2
961,009 + -2.9
961,010 - -0.2
961,010 - -1.1
961,072 + -0.2
961,072 + +0.5
961,072 + -0.5
961,072 + -0.4
961,072 + -0.6
961,072 + -0.1
961,072 + -0.4
961,072 + +0.7
961,073 - +0.2
961,073 - -1.5
961,073 - -0.4
961,073 - -0.0
961,073 - +0.1
961,073 - -1.7
961,073 - -0.3
961,073 - -0.3
961,073 - -2.4
961,073 - -0.2
961,073 - +0.1
961,073 - +0.3
961,073 - +1.0
961,073 - +0.7
961,073 - -0.0
961,073 - -2.0
961,073 - -1.3
961,073 - +1.4
961,118 - +0.0
961,118 - -1.8
961,285 + LRK53_RS04090 0.19 -0.6
961,285 + LRK53_RS04090 0.19 -0.6
961,285 + LRK53_RS04090 0.19 +0.6
961,286 - LRK53_RS04090 0.19 -0.9
961,286 - LRK53_RS04090 0.19 -0.3
961,286 - LRK53_RS04090 0.19 -1.5
961,286 - LRK53_RS04090 0.19 -0.0
961,328 - LRK53_RS04090 0.21 -0.0
961,456 + LRK53_RS04090 0.28 -0.3
961,465 + LRK53_RS04090 0.29 -0.6
961,466 - LRK53_RS04090 0.29 +0.4

Or see this region's nucleotide sequence