Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03505 and LRK53_RS03510 are separated by 58 nucleotides LRK53_RS03510 and LRK53_RS03515 overlap by 4 nucleotides
LRK53_RS03505: LRK53_RS03505 - EAL domain-containing protein, at 827,016 to 829,196
_RS03505
LRK53_RS03510: LRK53_RS03510 - DUF2269 domain-containing protein, at 829,255 to 829,731
_RS03510
LRK53_RS03515: LRK53_RS03515 - SDR family oxidoreductase, at 829,728 to 831,020
_RS03515
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.276 kb on + strand, within LRK53_RS03505 at 828.277 kb on - strand, within LRK53_RS03505 at 828.333 kb on + strand, within LRK53_RS03505 at 828.732 kb on + strand, within LRK53_RS03505 at 828.903 kb on + strand, within LRK53_RS03505 at 828.903 kb on + strand, within LRK53_RS03505 at 828.918 kb on + strand, within LRK53_RS03505 at 828.918 kb on + strand, within LRK53_RS03505 at 828.918 kb on + strand, within LRK53_RS03505 at 828.918 kb on + strand, within LRK53_RS03505 at 828.919 kb on - strand, within LRK53_RS03505 at 828.919 kb on - strand, within LRK53_RS03505 at 828.919 kb on - strand, within LRK53_RS03505 at 829.037 kb on + strand at 829.037 kb on + strand at 829.037 kb on + strand at 829.037 kb on + strand at 829.119 kb on + strand at 829.119 kb on + strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.358 kb on + strand, within LRK53_RS03510 at 829.358 kb on + strand, within LRK53_RS03510 at 829.358 kb on + strand, within LRK53_RS03510 at 829.358 kb on + strand, within LRK53_RS03510 at 829.358 kb on + strand, within LRK53_RS03510 at 829.358 kb on + strand, within LRK53_RS03510 at 829.359 kb on - strand, within LRK53_RS03510 at 829.359 kb on - strand, within LRK53_RS03510 at 829.359 kb on - strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.463 kb on + strand, within LRK53_RS03510 at 829.464 kb on - strand, within LRK53_RS03510 at 829.464 kb on - strand, within LRK53_RS03510 at 829.464 kb on - strand, within LRK53_RS03510 at 829.464 kb on - strand, within LRK53_RS03510 at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.721 kb on + strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.722 kb on - strand at 829.849 kb on + strand at 829.849 kb on + strand at 829.849 kb on + strand at 829.960 kb on - strand, within LRK53_RS03515 at 830.092 kb on + strand, within LRK53_RS03515 at 830.092 kb on + strand, within LRK53_RS03515 at 830.092 kb on + strand, within LRK53_RS03515 at 830.092 kb on + strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.093 kb on - strand, within LRK53_RS03515 at 830.365 kb on + strand, within LRK53_RS03515 at 830.365 kb on + strand, within LRK53_RS03515 at 830.365 kb on + strand, within LRK53_RS03515 at 830.366 kb on - strand, within LRK53_RS03515 at 830.366 kb on - strand, within LRK53_RS03515 at 830.366 kb on - strand, within LRK53_RS03515 at 830.366 kb on - strand, within LRK53_RS03515 at 830.366 kb on - strand, within LRK53_RS03515 at 830.561 kb on - strand, within LRK53_RS03515 at 830.578 kb on + strand, within LRK53_RS03515 at 830.578 kb on + strand, within LRK53_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 828,276 + LRK53_RS03505 0.58 -1.6 828,277 - LRK53_RS03505 0.58 -0.4 828,333 + LRK53_RS03505 0.60 +0.6 828,732 + LRK53_RS03505 0.79 -0.5 828,903 + LRK53_RS03505 0.87 -1.0 828,903 + LRK53_RS03505 0.87 -1.5 828,918 + LRK53_RS03505 0.87 +0.9 828,918 + LRK53_RS03505 0.87 -0.6 828,918 + LRK53_RS03505 0.87 -0.5 828,918 + LRK53_RS03505 0.87 -0.6 828,919 - LRK53_RS03505 0.87 +0.1 828,919 - LRK53_RS03505 0.87 -0.4 828,919 - LRK53_RS03505 0.87 -1.1 829,037 + +0.4 829,037 + +1.4 829,037 + -1.0 829,037 + +1.7 829,119 + -0.5 829,119 + -0.8 829,120 - -1.1 829,120 - -1.4 829,120 - +1.3 829,120 - +0.4 829,120 - +0.2 829,358 + LRK53_RS03510 0.22 +0.5 829,358 + LRK53_RS03510 0.22 +1.1 829,358 + LRK53_RS03510 0.22 -0.2 829,358 + LRK53_RS03510 0.22 -0.6 829,358 + LRK53_RS03510 0.22 -0.6 829,358 + LRK53_RS03510 0.22 +0.2 829,359 - LRK53_RS03510 0.22 -0.6 829,359 - LRK53_RS03510 0.22 +1.6 829,359 - LRK53_RS03510 0.22 +0.5 829,463 + LRK53_RS03510 0.44 -0.1 829,463 + LRK53_RS03510 0.44 -1.2 829,463 + LRK53_RS03510 0.44 -0.1 829,463 + LRK53_RS03510 0.44 +0.5 829,463 + LRK53_RS03510 0.44 -0.1 829,463 + LRK53_RS03510 0.44 -0.2 829,464 - LRK53_RS03510 0.44 +0.2 829,464 - LRK53_RS03510 0.44 -0.6 829,464 - LRK53_RS03510 0.44 -0.5 829,464 - LRK53_RS03510 0.44 +0.1 829,721 + +0.9 829,721 + -1.3 829,721 + -1.9 829,721 + +2.3 829,721 + +0.2 829,721 + +1.9 829,721 + -1.4 829,721 + -2.2 829,721 + +0.4 829,721 + +0.9 829,721 + -0.6 829,721 + -0.6 829,721 + -0.9 829,721 + -0.8 829,721 + +1.3 829,721 + +1.5 829,721 + -0.2 829,721 + -0.2 829,721 + -0.4 829,721 + -1.4 829,721 + -0.1 829,721 + -0.8 829,721 + -2.1 829,721 + +0.2 829,721 + +0.2 829,721 + +0.9 829,721 + -1.1 829,721 + -1.3 829,721 + +0.9 829,721 + +1.4 829,721 + -1.9 829,721 + +0.4 829,721 + -0.9 829,721 + -0.9 829,721 + -2.2 829,721 + -0.1 829,721 + +1.1 829,721 + -0.6 829,721 + -0.1 829,721 + -0.3 829,721 + -0.3 829,721 + -1.1 829,721 + -1.9 829,721 + -0.1 829,721 + -0.2 829,721 + +1.2 829,721 + -0.8 829,721 + +0.2 829,722 - +0.9 829,722 - -0.4 829,722 - -0.7 829,722 - +1.2 829,722 - +2.9 829,722 - -0.3 829,722 - +0.9 829,722 - -0.1 829,722 - -0.3 829,722 - +0.3 829,722 - +0.2 829,722 - -0.2 829,722 - -0.9 829,722 - -1.4 829,722 - -0.4 829,722 - -0.1 829,722 - -1.3 829,722 - -1.1 829,722 - -0.5 829,722 - -1.8 829,722 - -0.1 829,722 - -1.3 829,722 - -0.1 829,722 - -0.3 829,722 - +0.9 829,722 - +0.1 829,722 - -0.1 829,722 - -0.6 829,722 - +0.2 829,722 - -0.4 829,722 - -0.1 829,722 - +0.6 829,722 - -0.6 829,722 - -2.4 829,722 - -0.7 829,722 - -1.0 829,722 - +1.9 829,722 - +0.5 829,722 - +3.5 829,722 - +0.8 829,722 - +2.9 829,722 - -2.4 829,722 - -1.3 829,722 - +0.4 829,722 - +0.0 829,722 - +0.9 829,722 - +0.9 829,722 - -0.1 829,722 - -1.4 829,722 - +0.0 829,722 - -2.4 829,722 - -1.1 829,722 - -2.2 829,722 - -1.1 829,722 - -0.6 829,722 - -0.6 829,722 - +1.6 829,722 - +0.9 829,722 - +0.9 829,722 - +0.1 829,849 + -0.7 829,849 + +0.9 829,849 + +0.2 829,960 - LRK53_RS03515 0.18 +0.6 830,092 + LRK53_RS03515 0.28 -0.9 830,092 + LRK53_RS03515 0.28 -1.9 830,092 + LRK53_RS03515 0.28 -1.0 830,092 + LRK53_RS03515 0.28 +0.5 830,093 - LRK53_RS03515 0.28 +0.4 830,093 - LRK53_RS03515 0.28 +0.6 830,093 - LRK53_RS03515 0.28 -0.2 830,093 - LRK53_RS03515 0.28 -0.3 830,093 - LRK53_RS03515 0.28 -0.3 830,093 - LRK53_RS03515 0.28 -0.6 830,365 + LRK53_RS03515 0.49 -0.7 830,365 + LRK53_RS03515 0.49 +0.4 830,365 + LRK53_RS03515 0.49 +0.4 830,366 - LRK53_RS03515 0.49 -1.1 830,366 - LRK53_RS03515 0.49 +0.5 830,366 - LRK53_RS03515 0.49 -0.6 830,366 - LRK53_RS03515 0.49 +0.9 830,366 - LRK53_RS03515 0.49 +0.8 830,561 - LRK53_RS03515 0.64 -0.9 830,578 + LRK53_RS03515 0.66 -1.5 830,578 + LRK53_RS03515 0.66 -0.2
Or see this region's nucleotide sequence