Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00505

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00495 and LRK53_RS00500 are separated by 77 nucleotidesLRK53_RS00500 and LRK53_RS00505 are separated by 3 nucleotidesLRK53_RS00505 and LRK53_RS00510 overlap by 4 nucleotidesLRK53_RS00510 and LRK53_RS00515 are separated by 24 nucleotides LRK53_RS00495: LRK53_RS00495 - Wzz/FepE/Etk N-terminal domain-containing protein, at 108,649 to 109,488 _RS00495 LRK53_RS00500: LRK53_RS00500 - class I SAM-dependent methyltransferase, at 109,566 to 110,408 _RS00500 LRK53_RS00505: LRK53_RS00505 - amidohydrolase family protein, at 110,412 to 111,647 _RS00505 LRK53_RS00510: LRK53_RS00510 - class I SAM-dependent methyltransferase, at 111,644 to 112,342 _RS00510 LRK53_RS00515: LRK53_RS00515 - B12-binding domain-containing radical SAM protein, at 112,367 to 113,875 _RS00515 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 109.662 kb on + strand, within LRK53_RS00500at 109.663 kb on - strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.959 kb on + strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 109.960 kb on - strand, within LRK53_RS00500at 110.095 kb on - strand, within LRK53_RS00500at 110.095 kb on - strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.187 kb on + strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.188 kb on - strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.190 kb on + strand, within LRK53_RS00500at 110.191 kb on - strand, within LRK53_RS00500at 110.191 kb on - strand, within LRK53_RS00500at 110.208 kb on + strand, within LRK53_RS00500at 110.208 kb on + strand, within LRK53_RS00500at 110.209 kb on - strand, within LRK53_RS00500at 110.277 kb on + strand, within LRK53_RS00500at 110.277 kb on + strand, within LRK53_RS00500at 110.277 kb on + strand, within LRK53_RS00500at 110.278 kb on - strand, within LRK53_RS00500at 110.278 kb on - strand, within LRK53_RS00500at 110.655 kb on + strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.656 kb on - strand, within LRK53_RS00505at 110.862 kb on + strand, within LRK53_RS00505at 110.863 kb on - strand, within LRK53_RS00505at 110.863 kb on - strand, within LRK53_RS00505at 111.639 kb on + strandat 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.818 kb on + strand, within LRK53_RS00510at 111.819 kb on - strand, within LRK53_RS00510at 111.819 kb on - strand, within LRK53_RS00510at 111.991 kb on + strand, within LRK53_RS00510at 111.991 kb on + strand, within LRK53_RS00510at 111.992 kb on - strand, within LRK53_RS00510at 111.992 kb on - strand, within LRK53_RS00510at 112.154 kb on + strand, within LRK53_RS00510at 112.154 kb on + strand, within LRK53_RS00510at 112.155 kb on - strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.181 kb on + strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.182 kb on - strand, within LRK53_RS00510at 112.317 kb on + strandat 112.317 kb on + strandat 112.317 kb on + strandat 112.318 kb on - strandat 112.318 kb on - strandat 112.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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109,662 + LRK53_RS00500 0.11 -1.5
109,663 - LRK53_RS00500 0.12 +1.6
109,959 + LRK53_RS00500 0.47 -1.3
109,959 + LRK53_RS00500 0.47 -0.7
109,959 + LRK53_RS00500 0.47 +0.5
109,959 + LRK53_RS00500 0.47 -0.5
109,959 + LRK53_RS00500 0.47 +2.0
109,959 + LRK53_RS00500 0.47 +0.0
109,959 + LRK53_RS00500 0.47 -1.5
109,959 + LRK53_RS00500 0.47 -0.5
109,959 + LRK53_RS00500 0.47 +1.0
109,959 + LRK53_RS00500 0.47 -0.5
109,960 - LRK53_RS00500 0.47 +0.0
109,960 - LRK53_RS00500 0.47 -0.3
109,960 - LRK53_RS00500 0.47 -0.3
109,960 - LRK53_RS00500 0.47 -0.7
109,960 - LRK53_RS00500 0.47 -1.5
109,960 - LRK53_RS00500 0.47 -1.8
110,095 - LRK53_RS00500 0.63 -1.4
110,095 - LRK53_RS00500 0.63 -0.5
110,187 + LRK53_RS00500 0.74 +0.2
110,187 + LRK53_RS00500 0.74 -1.5
110,187 + LRK53_RS00500 0.74 -0.4
110,188 - LRK53_RS00500 0.74 -0.2
110,188 - LRK53_RS00500 0.74 +1.6
110,188 - LRK53_RS00500 0.74 -2.3
110,190 + LRK53_RS00500 0.74 -0.8
110,190 + LRK53_RS00500 0.74 +0.0
110,190 + LRK53_RS00500 0.74 -1.1
110,191 - LRK53_RS00500 0.74 +0.6
110,191 - LRK53_RS00500 0.74 -0.8
110,208 + LRK53_RS00500 0.76 -0.6
110,208 + LRK53_RS00500 0.76 -1.7
110,209 - LRK53_RS00500 0.76 +0.3
110,277 + LRK53_RS00500 0.84 -0.4
110,277 + LRK53_RS00500 0.84 +0.4
110,277 + LRK53_RS00500 0.84 -0.8
110,278 - LRK53_RS00500 0.84 -1.7
110,278 - LRK53_RS00500 0.84 +0.0
110,655 + LRK53_RS00505 0.20 -1.5
110,656 - LRK53_RS00505 0.20 -1.0
110,656 - LRK53_RS00505 0.20 -0.5
110,656 - LRK53_RS00505 0.20 -0.2
110,656 - LRK53_RS00505 0.20 -1.4
110,656 - LRK53_RS00505 0.20 -1.4
110,656 - LRK53_RS00505 0.20 -0.3
110,656 - LRK53_RS00505 0.20 +0.6
110,656 - LRK53_RS00505 0.20 -0.8
110,656 - LRK53_RS00505 0.20 -2.3
110,862 + LRK53_RS00505 0.36 -1.0
110,863 - LRK53_RS00505 0.36 -0.0
110,863 - LRK53_RS00505 0.36 -1.0
111,639 + -1.5
111,818 + LRK53_RS00510 0.25 +0.6
111,818 + LRK53_RS00510 0.25 -0.3
111,818 + LRK53_RS00510 0.25 -0.2
111,818 + LRK53_RS00510 0.25 +1.0
111,819 - LRK53_RS00510 0.25 -0.5
111,819 - LRK53_RS00510 0.25 -2.3
111,991 + LRK53_RS00510 0.50 -0.5
111,991 + LRK53_RS00510 0.50 +0.2
111,992 - LRK53_RS00510 0.50 -1.8
111,992 - LRK53_RS00510 0.50 -1.5
112,154 + LRK53_RS00510 0.73 -0.5
112,154 + LRK53_RS00510 0.73 +1.0
112,155 - LRK53_RS00510 0.73 +1.2
112,181 + LRK53_RS00510 0.77 +1.0
112,181 + LRK53_RS00510 0.77 +0.0
112,181 + LRK53_RS00510 0.77 +0.6
112,181 + LRK53_RS00510 0.77 -0.6
112,182 - LRK53_RS00510 0.77 -0.3
112,182 - LRK53_RS00510 0.77 -1.8
112,182 - LRK53_RS00510 0.77 -0.3
112,182 - LRK53_RS00510 0.77 -2.4
112,182 - LRK53_RS00510 0.77 -0.1
112,182 - LRK53_RS00510 0.77 -0.7
112,317 + -2.1
112,317 + -0.4
112,317 + +0.2
112,318 - -1.5
112,318 - -2.5
112,318 - -1.8

Or see this region's nucleotide sequence