Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07360

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07355 and LRK53_RS07360 are separated by 534 nucleotidesLRK53_RS07360 and LRK53_RS07365 overlap by 4 nucleotidesLRK53_RS07365 and LRK53_RS07370 are separated by 30 nucleotides LRK53_RS07355: LRK53_RS07355 - N-formylglutamate deformylase, at 1,649,618 to 1,650,400 _RS07355 LRK53_RS07360: LRK53_RS07360 - Rid family hydrolase, at 1,650,935 to 1,651,366 _RS07360 LRK53_RS07365: LRK53_RS07365 - carbonate dehydratase, at 1,651,363 to 1,652,028 _RS07365 LRK53_RS07370: LRK53_RS07370 - aldehyde dehydrogenase, at 1,652,059 to 1,653,546 _RS07370 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1649.993 kb on + strand, within LRK53_RS07355at 1649.993 kb on + strand, within LRK53_RS07355at 1649.993 kb on + strand, within LRK53_RS07355at 1650.236 kb on + strand, within LRK53_RS07355at 1650.236 kb on + strand, within LRK53_RS07355at 1650.236 kb on + strand, within LRK53_RS07355at 1650.237 kb on - strand, within LRK53_RS07355at 1650.237 kb on - strand, within LRK53_RS07355at 1650.237 kb on - strand, within LRK53_RS07355at 1650.237 kb on - strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.308 kb on + strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.309 kb on - strand, within LRK53_RS07355at 1650.408 kb on + strandat 1650.408 kb on + strandat 1650.408 kb on + strandat 1650.408 kb on + strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.409 kb on - strandat 1650.493 kb on + strandat 1650.493 kb on + strandat 1650.493 kb on + strandat 1650.493 kb on + strandat 1650.493 kb on + strandat 1650.493 kb on + strandat 1650.494 kb on - strandat 1650.494 kb on - strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.598 kb on + strandat 1650.599 kb on - strandat 1650.599 kb on - strandat 1650.618 kb on + strandat 1650.859 kb on + strandat 1650.860 kb on - strandat 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.065 kb on + strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.066 kb on - strand, within LRK53_RS07360at 1651.197 kb on + strand, within LRK53_RS07360at 1651.197 kb on + strand, within LRK53_RS07360at 1651.314 kb on + strand, within LRK53_RS07360at 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.060 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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1,649,993 + LRK53_RS07355 0.48 +1.6
1,649,993 + LRK53_RS07355 0.48 +1.0
1,649,993 + LRK53_RS07355 0.48 -0.6
1,650,236 + LRK53_RS07355 0.79 -0.7
1,650,236 + LRK53_RS07355 0.79 -0.5
1,650,236 + LRK53_RS07355 0.79 -2.2
1,650,237 - LRK53_RS07355 0.79 +0.4
1,650,237 - LRK53_RS07355 0.79 +0.2
1,650,237 - LRK53_RS07355 0.79 -0.6
1,650,237 - LRK53_RS07355 0.79 -0.3
1,650,308 + LRK53_RS07355 0.88 +1.8
1,650,308 + LRK53_RS07355 0.88 -1.0
1,650,308 + LRK53_RS07355 0.88 +0.2
1,650,308 + LRK53_RS07355 0.88 -0.2
1,650,308 + LRK53_RS07355 0.88 -0.0
1,650,308 + LRK53_RS07355 0.88 +1.0
1,650,308 + LRK53_RS07355 0.88 -0.8
1,650,308 + LRK53_RS07355 0.88 -0.1
1,650,308 + LRK53_RS07355 0.88 -0.5
1,650,308 + LRK53_RS07355 0.88 +3.0
1,650,308 + LRK53_RS07355 0.88 -0.1
1,650,308 + LRK53_RS07355 0.88 -0.2
1,650,308 + LRK53_RS07355 0.88 -0.1
1,650,308 + LRK53_RS07355 0.88 -1.6
1,650,308 + LRK53_RS07355 0.88 +1.0
1,650,308 + LRK53_RS07355 0.88 -0.6
1,650,309 - LRK53_RS07355 0.88 -1.6
1,650,309 - LRK53_RS07355 0.88 +1.0
1,650,309 - LRK53_RS07355 0.88 +0.6
1,650,309 - LRK53_RS07355 0.88 -2.5
1,650,309 - LRK53_RS07355 0.88 -2.5
1,650,309 - LRK53_RS07355 0.88 +1.0
1,650,309 - LRK53_RS07355 0.88 +2.0
1,650,309 - LRK53_RS07355 0.88 +1.0
1,650,309 - LRK53_RS07355 0.88 +2.0
1,650,408 + -0.8
1,650,408 + +1.0
1,650,408 + +0.1
1,650,408 + +0.2
1,650,409 - -1.8
1,650,409 - -2.3
1,650,409 - -2.5
1,650,409 - +1.6
1,650,409 - -0.6
1,650,409 - +0.7
1,650,409 - +0.2
1,650,409 - +2.6
1,650,493 + -0.2
1,650,493 + -0.9
1,650,493 + -0.6
1,650,493 + +1.0
1,650,493 + +0.8
1,650,493 + -1.0
1,650,494 - -0.9
1,650,494 - -0.6
1,650,598 + -0.6
1,650,598 + -2.3
1,650,598 + +1.6
1,650,598 + -2.3
1,650,598 + +0.2
1,650,598 + -0.3
1,650,598 + -0.9
1,650,598 + +1.3
1,650,599 - -0.4
1,650,599 - -0.6
1,650,618 + +0.6
1,650,859 + +0.6
1,650,860 - +0.7
1,651,065 + LRK53_RS07360 0.30 +3.0
1,651,065 + LRK53_RS07360 0.30 -1.9
1,651,065 + LRK53_RS07360 0.30 +1.6
1,651,065 + LRK53_RS07360 0.30 +0.2
1,651,065 + LRK53_RS07360 0.30 -0.6
1,651,065 + LRK53_RS07360 0.30 -1.0
1,651,066 - LRK53_RS07360 0.30 -0.9
1,651,066 - LRK53_RS07360 0.30 -1.4
1,651,066 - LRK53_RS07360 0.30 -1.2
1,651,066 - LRK53_RS07360 0.30 -1.2
1,651,066 - LRK53_RS07360 0.30 -0.3
1,651,066 - LRK53_RS07360 0.30 -1.1
1,651,066 - LRK53_RS07360 0.30 +1.0
1,651,066 - LRK53_RS07360 0.30 +0.2
1,651,197 + LRK53_RS07360 0.61 -2.0
1,651,197 + LRK53_RS07360 0.61 -0.0
1,651,314 + LRK53_RS07360 0.88 -0.4
1,652,060 + -0.6
1,652,060 + -0.1
1,652,060 + +0.2
1,652,060 + -0.8
1,652,084 + +1.8
1,652,084 + +2.6
1,652,084 + +1.0
1,652,085 - -0.0

Or see this region's nucleotide sequence