Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07355 and LRK53_RS07360 are separated by 534 nucleotides LRK53_RS07360 and LRK53_RS07365 overlap by 4 nucleotides LRK53_RS07365 and LRK53_RS07370 are separated by 30 nucleotides
LRK53_RS07355: LRK53_RS07355 - N-formylglutamate deformylase, at 1,649,618 to 1,650,400
_RS07355
LRK53_RS07360: LRK53_RS07360 - Rid family hydrolase, at 1,650,935 to 1,651,366
_RS07360
LRK53_RS07365: LRK53_RS07365 - carbonate dehydratase, at 1,651,363 to 1,652,028
_RS07365
LRK53_RS07370: LRK53_RS07370 - aldehyde dehydrogenase, at 1,652,059 to 1,653,546
_RS07370
Position (kb)
1650
1651
1652 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1649.993 kb on + strand, within LRK53_RS07355 at 1649.993 kb on + strand, within LRK53_RS07355 at 1649.993 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.494 kb on - strand at 1650.494 kb on - strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.598 kb on + strand at 1650.599 kb on - strand at 1650.599 kb on - strand at 1650.618 kb on + strand at 1650.859 kb on + strand at 1650.860 kb on - strand at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.065 kb on + strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.066 kb on - strand, within LRK53_RS07360 at 1651.197 kb on + strand, within LRK53_RS07360 at 1651.197 kb on + strand, within LRK53_RS07360 at 1651.314 kb on + strand, within LRK53_RS07360 at 1652.060 kb on + strand at 1652.060 kb on + strand at 1652.060 kb on + strand at 1652.060 kb on + strand at 1652.084 kb on + strand at 1652.084 kb on + strand at 1652.084 kb on + strand at 1652.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,649,993 + LRK53_RS07355 0.48 +1.6 1,649,993 + LRK53_RS07355 0.48 +1.0 1,649,993 + LRK53_RS07355 0.48 -0.6 1,650,236 + LRK53_RS07355 0.79 -0.7 1,650,236 + LRK53_RS07355 0.79 -0.5 1,650,236 + LRK53_RS07355 0.79 -2.2 1,650,237 - LRK53_RS07355 0.79 +0.4 1,650,237 - LRK53_RS07355 0.79 +0.2 1,650,237 - LRK53_RS07355 0.79 -0.6 1,650,237 - LRK53_RS07355 0.79 -0.3 1,650,308 + LRK53_RS07355 0.88 +1.8 1,650,308 + LRK53_RS07355 0.88 -1.0 1,650,308 + LRK53_RS07355 0.88 +0.2 1,650,308 + LRK53_RS07355 0.88 -0.2 1,650,308 + LRK53_RS07355 0.88 -0.0 1,650,308 + LRK53_RS07355 0.88 +1.0 1,650,308 + LRK53_RS07355 0.88 -0.8 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 -0.5 1,650,308 + LRK53_RS07355 0.88 +3.0 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 -0.2 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 -1.6 1,650,308 + LRK53_RS07355 0.88 +1.0 1,650,308 + LRK53_RS07355 0.88 -0.6 1,650,309 - LRK53_RS07355 0.88 -1.6 1,650,309 - LRK53_RS07355 0.88 +1.0 1,650,309 - LRK53_RS07355 0.88 +0.6 1,650,309 - LRK53_RS07355 0.88 -2.5 1,650,309 - LRK53_RS07355 0.88 -2.5 1,650,309 - LRK53_RS07355 0.88 +1.0 1,650,309 - LRK53_RS07355 0.88 +2.0 1,650,309 - LRK53_RS07355 0.88 +1.0 1,650,309 - LRK53_RS07355 0.88 +2.0 1,650,408 + -0.8 1,650,408 + +1.0 1,650,408 + +0.1 1,650,408 + +0.2 1,650,409 - -1.8 1,650,409 - -2.3 1,650,409 - -2.5 1,650,409 - +1.6 1,650,409 - -0.6 1,650,409 - +0.7 1,650,409 - +0.2 1,650,409 - +2.6 1,650,493 + -0.2 1,650,493 + -0.9 1,650,493 + -0.6 1,650,493 + +1.0 1,650,493 + +0.8 1,650,493 + -1.0 1,650,494 - -0.9 1,650,494 - -0.6 1,650,598 + -0.6 1,650,598 + -2.3 1,650,598 + +1.6 1,650,598 + -2.3 1,650,598 + +0.2 1,650,598 + -0.3 1,650,598 + -0.9 1,650,598 + +1.3 1,650,599 - -0.4 1,650,599 - -0.6 1,650,618 + +0.6 1,650,859 + +0.6 1,650,860 - +0.7 1,651,065 + LRK53_RS07360 0.30 +3.0 1,651,065 + LRK53_RS07360 0.30 -1.9 1,651,065 + LRK53_RS07360 0.30 +1.6 1,651,065 + LRK53_RS07360 0.30 +0.2 1,651,065 + LRK53_RS07360 0.30 -0.6 1,651,065 + LRK53_RS07360 0.30 -1.0 1,651,066 - LRK53_RS07360 0.30 -0.9 1,651,066 - LRK53_RS07360 0.30 -1.4 1,651,066 - LRK53_RS07360 0.30 -1.2 1,651,066 - LRK53_RS07360 0.30 -1.2 1,651,066 - LRK53_RS07360 0.30 -0.3 1,651,066 - LRK53_RS07360 0.30 -1.1 1,651,066 - LRK53_RS07360 0.30 +1.0 1,651,066 - LRK53_RS07360 0.30 +0.2 1,651,197 + LRK53_RS07360 0.61 -2.0 1,651,197 + LRK53_RS07360 0.61 -0.0 1,651,314 + LRK53_RS07360 0.88 -0.4 1,652,060 + -0.6 1,652,060 + -0.1 1,652,060 + +0.2 1,652,060 + -0.8 1,652,084 + +1.8 1,652,084 + +2.6 1,652,084 + +1.0 1,652,085 - -0.0
Or see this region's nucleotide sequence