Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07330 and LRK53_RS07335 are separated by 120 nucleotides LRK53_RS07335 and LRK53_RS07340 are separated by 86 nucleotides LRK53_RS07340 and LRK53_RS07345 are separated by 140 nucleotides LRK53_RS07345 and LRK53_RS07350 are separated by 78 nucleotides
LRK53_RS07330: LRK53_RS07330 - C40 family peptidase, at 1,646,204 to 1,646,725
_RS07330
LRK53_RS07335: LRK53_RS07335 - hypothetical protein, at 1,646,846 to 1,647,409
_RS07335
LRK53_RS07340: LRK53_RS07340 - hypothetical protein, at 1,647,496 to 1,648,590
_RS07340
LRK53_RS07345: LRK53_RS07345 - IS200/IS605 family transposase, at 1,648,731 to 1,649,162
_RS07345
LRK53_RS07350: LRK53_RS07350 - hypothetical protein, at 1,649,241 to 1,649,507
_RS07350
Position (kb) 1647
1648
1649 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1646.533 kb on - strand, within LRK53_RS07330 at 1647.183 kb on + strand, within LRK53_RS07335 at 1647.183 kb on + strand, within LRK53_RS07335 at 1647.184 kb on - strand, within LRK53_RS07335 at 1647.184 kb on - strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.273 kb on + strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.274 kb on - strand, within LRK53_RS07335 at 1647.433 kb on - strand at 1647.497 kb on + strand at 1647.497 kb on + strand at 1647.498 kb on - strand at 1647.498 kb on - strand at 1647.498 kb on - strand at 1647.498 kb on - strand at 1647.498 kb on - strand at 1647.546 kb on + strand at 1647.547 kb on - strand at 1647.547 kb on - strand at 1647.547 kb on - strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.580 kb on + strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.581 kb on - strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.584 kb on + strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.585 kb on - strand at 1647.659 kb on + strand, within LRK53_RS07340 at 1647.659 kb on + strand, within LRK53_RS07340 at 1647.660 kb on - strand, within LRK53_RS07340 at 1647.660 kb on - strand, within LRK53_RS07340 at 1647.660 kb on - strand, within LRK53_RS07340 at 1647.660 kb on - strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.716 kb on + strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.717 kb on - strand, within LRK53_RS07340 at 1647.830 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.887 kb on + strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.888 kb on - strand, within LRK53_RS07340 at 1647.980 kb on + strand, within LRK53_RS07340 at 1647.980 kb on + strand, within LRK53_RS07340 at 1647.981 kb on - strand, within LRK53_RS07340 at 1648.121 kb on + strand, within LRK53_RS07340 at 1648.176 kb on - strand, within LRK53_RS07340 at 1648.232 kb on + strand, within LRK53_RS07340 at 1648.232 kb on + strand, within LRK53_RS07340 at 1648.232 kb on + strand, within LRK53_RS07340 at 1648.232 kb on + strand, within LRK53_RS07340 at 1648.232 kb on + strand, within LRK53_RS07340 at 1648.233 kb on - strand, within LRK53_RS07340 at 1648.283 kb on + strand, within LRK53_RS07340 at 1648.283 kb on + strand, within LRK53_RS07340 at 1648.284 kb on - strand, within LRK53_RS07340 at 1648.301 kb on + strand, within LRK53_RS07340 at 1648.302 kb on - strand, within LRK53_RS07340 at 1648.302 kb on - strand, within LRK53_RS07340 at 1648.601 kb on + strand at 1648.602 kb on - strand at 1648.602 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.931 kb on + strand, within LRK53_RS07345 at 1648.931 kb on + strand, within LRK53_RS07345 at 1648.931 kb on + strand, within LRK53_RS07345 at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.353 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.493 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.536 kb on - strand at 1649.536 kb on - strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,646,533 - LRK53_RS07330 0.63 -0.2 1,647,183 + LRK53_RS07335 0.60 +0.1 1,647,183 + LRK53_RS07335 0.60 -0.6 1,647,184 - LRK53_RS07335 0.60 -1.4 1,647,184 - LRK53_RS07335 0.60 -2.2 1,647,273 + LRK53_RS07335 0.76 +0.1 1,647,273 + LRK53_RS07335 0.76 -0.6 1,647,273 + LRK53_RS07335 0.76 -0.3 1,647,273 + LRK53_RS07335 0.76 -0.4 1,647,273 + LRK53_RS07335 0.76 -0.1 1,647,273 + LRK53_RS07335 0.76 -0.3 1,647,273 + LRK53_RS07335 0.76 +0.4 1,647,274 - LRK53_RS07335 0.76 +0.4 1,647,274 - LRK53_RS07335 0.76 +1.0 1,647,274 - LRK53_RS07335 0.76 +1.0 1,647,274 - LRK53_RS07335 0.76 -1.0 1,647,274 - LRK53_RS07335 0.76 -0.5 1,647,274 - LRK53_RS07335 0.76 -1.4 1,647,274 - LRK53_RS07335 0.76 -1.1 1,647,274 - LRK53_RS07335 0.76 -0.3 1,647,274 - LRK53_RS07335 0.76 -1.4 1,647,274 - LRK53_RS07335 0.76 -1.0 1,647,274 - LRK53_RS07335 0.76 -1.6 1,647,274 - LRK53_RS07335 0.76 -1.6 1,647,433 - +0.3 1,647,497 + -1.7 1,647,497 + -1.2 1,647,498 - +2.0 1,647,498 - +1.2 1,647,498 - -1.5 1,647,498 - -1.0 1,647,498 - +0.2 1,647,546 + -0.5 1,647,547 - -0.8 1,647,547 - -1.2 1,647,547 - -0.6 1,647,580 + +1.0 1,647,580 + +0.1 1,647,580 + -0.2 1,647,580 + +1.0 1,647,580 + -1.2 1,647,580 + -0.1 1,647,580 + +0.3 1,647,580 + -1.7 1,647,581 - +1.7 1,647,581 - -0.3 1,647,581 - +0.4 1,647,581 - -2.0 1,647,581 - +0.6 1,647,581 - -1.4 1,647,581 - -0.8 1,647,581 - -1.4 1,647,581 - -0.6 1,647,581 - -1.4 1,647,584 + +0.4 1,647,584 + -0.2 1,647,584 + -1.0 1,647,584 + +0.6 1,647,584 + -1.4 1,647,584 + +2.3 1,647,584 + -0.5 1,647,584 + -0.6 1,647,584 + -0.9 1,647,584 + -0.4 1,647,584 + +0.5 1,647,584 + -0.2 1,647,584 + -0.6 1,647,584 + -0.6 1,647,584 + +0.1 1,647,584 + -0.0 1,647,584 + -0.0 1,647,584 + -1.0 1,647,584 + -0.2 1,647,584 + -0.0 1,647,585 - -0.6 1,647,585 - +0.5 1,647,585 - -0.6 1,647,585 - +1.0 1,647,585 - +0.2 1,647,585 - -1.0 1,647,585 - -0.6 1,647,585 - +3.0 1,647,585 - -0.5 1,647,659 + LRK53_RS07340 0.15 -1.2 1,647,659 + LRK53_RS07340 0.15 -0.3 1,647,660 - LRK53_RS07340 0.15 -1.8 1,647,660 - LRK53_RS07340 0.15 -0.0 1,647,660 - LRK53_RS07340 0.15 -0.4 1,647,660 - LRK53_RS07340 0.15 -1.2 1,647,716 + LRK53_RS07340 0.20 +1.0 1,647,716 + LRK53_RS07340 0.20 -0.6 1,647,716 + LRK53_RS07340 0.20 +0.2 1,647,716 + LRK53_RS07340 0.20 -0.5 1,647,716 + LRK53_RS07340 0.20 -0.6 1,647,716 + LRK53_RS07340 0.20 -1.6 1,647,716 + LRK53_RS07340 0.20 +1.0 1,647,716 + LRK53_RS07340 0.20 -1.0 1,647,717 - LRK53_RS07340 0.20 -2.5 1,647,717 - LRK53_RS07340 0.20 -0.0 1,647,717 - LRK53_RS07340 0.20 -0.6 1,647,717 - LRK53_RS07340 0.20 +0.3 1,647,717 - LRK53_RS07340 0.20 -0.8 1,647,717 - LRK53_RS07340 0.20 +2.0 1,647,830 + LRK53_RS07340 0.31 -0.8 1,647,887 + LRK53_RS07340 0.36 +1.0 1,647,887 + LRK53_RS07340 0.36 +1.0 1,647,887 + LRK53_RS07340 0.36 -2.3 1,647,887 + LRK53_RS07340 0.36 -1.8 1,647,887 + LRK53_RS07340 0.36 -1.4 1,647,887 + LRK53_RS07340 0.36 +0.3 1,647,887 + LRK53_RS07340 0.36 -1.2 1,647,887 + LRK53_RS07340 0.36 -1.4 1,647,887 + LRK53_RS07340 0.36 -1.3 1,647,887 + LRK53_RS07340 0.36 +0.6 1,647,887 + LRK53_RS07340 0.36 +0.4 1,647,887 + LRK53_RS07340 0.36 +1.0 1,647,888 - LRK53_RS07340 0.36 +0.4 1,647,888 - LRK53_RS07340 0.36 +0.4 1,647,888 - LRK53_RS07340 0.36 -1.0 1,647,888 - LRK53_RS07340 0.36 -0.6 1,647,888 - LRK53_RS07340 0.36 +0.5 1,647,888 - LRK53_RS07340 0.36 -1.2 1,647,888 - LRK53_RS07340 0.36 -2.4 1,647,980 + LRK53_RS07340 0.44 -1.6 1,647,980 + LRK53_RS07340 0.44 -1.6 1,647,981 - LRK53_RS07340 0.44 +0.6 1,648,121 + LRK53_RS07340 0.57 -1.0 1,648,176 - LRK53_RS07340 0.62 -0.8 1,648,232 + LRK53_RS07340 0.67 -0.0 1,648,232 + LRK53_RS07340 0.67 -0.4 1,648,232 + LRK53_RS07340 0.67 -2.2 1,648,232 + LRK53_RS07340 0.67 -2.5 1,648,232 + LRK53_RS07340 0.67 +1.8 1,648,233 - LRK53_RS07340 0.67 -0.6 1,648,283 + LRK53_RS07340 0.72 +3.5 1,648,283 + LRK53_RS07340 0.72 -2.0 1,648,284 - LRK53_RS07340 0.72 -0.2 1,648,301 + LRK53_RS07340 0.74 -0.0 1,648,302 - LRK53_RS07340 0.74 +0.2 1,648,302 - LRK53_RS07340 0.74 -1.4 1,648,601 + -0.0 1,648,602 - +0.4 1,648,602 - -1.6 1,648,610 - -0.4 1,648,610 - +3.3 1,648,610 - -1.1 1,648,610 - +0.1 1,648,610 - -0.3 1,648,931 + LRK53_RS07345 0.46 +1.0 1,648,931 + LRK53_RS07345 0.46 -0.5 1,648,931 + LRK53_RS07345 0.46 +1.0 1,649,242 + -1.4 1,649,242 + +0.6 1,649,242 + -0.3 1,649,242 + -0.0 1,649,242 + -0.6 1,649,267 + -0.0 1,649,267 + -1.4 1,649,267 + -1.1 1,649,267 + -0.6 1,649,267 + -0.0 1,649,267 + -0.6 1,649,267 + -0.6 1,649,267 + +1.5 1,649,271 + LRK53_RS07350 0.11 +0.4 1,649,271 + LRK53_RS07350 0.11 -0.6 1,649,271 + LRK53_RS07350 0.11 -2.4 1,649,271 + LRK53_RS07350 0.11 +1.0 1,649,271 + LRK53_RS07350 0.11 +0.4 1,649,271 + LRK53_RS07350 0.11 +1.0 1,649,271 + LRK53_RS07350 0.11 +0.5 1,649,271 + LRK53_RS07350 0.11 -0.4 1,649,271 + LRK53_RS07350 0.11 -0.3 1,649,271 + LRK53_RS07350 0.11 +0.6 1,649,271 + LRK53_RS07350 0.11 -0.8 1,649,271 + LRK53_RS07350 0.11 +0.4 1,649,271 + LRK53_RS07350 0.11 +1.0 1,649,271 + LRK53_RS07350 0.11 -1.9 1,649,271 + LRK53_RS07350 0.11 -1.7 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 +2.0 1,649,271 + LRK53_RS07350 0.11 +2.0 1,649,271 + LRK53_RS07350 0.11 +0.3 1,649,271 + LRK53_RS07350 0.11 -1.0 1,649,271 + LRK53_RS07350 0.11 +0.7 1,649,271 + LRK53_RS07350 0.11 -1.4 1,649,271 + LRK53_RS07350 0.11 -1.4 1,649,271 + LRK53_RS07350 0.11 -0.6 1,649,271 + LRK53_RS07350 0.11 -0.6 1,649,271 + LRK53_RS07350 0.11 -1.8 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 +0.3 1,649,271 + LRK53_RS07350 0.11 -0.0 1,649,271 + LRK53_RS07350 0.11 -0.2 1,649,271 + LRK53_RS07350 0.11 +1.0 1,649,271 + LRK53_RS07350 0.11 +1.2 1,649,271 + LRK53_RS07350 0.11 +0.2 1,649,271 + LRK53_RS07350 0.11 -0.6 1,649,271 + LRK53_RS07350 0.11 +1.0 1,649,271 + LRK53_RS07350 0.11 +2.8 1,649,271 + LRK53_RS07350 0.11 +0.7 1,649,271 + LRK53_RS07350 0.11 +1.1 1,649,271 + LRK53_RS07350 0.11 -0.4 1,649,271 + LRK53_RS07350 0.11 -0.0 1,649,353 + LRK53_RS07350 0.42 -0.6 1,649,359 + LRK53_RS07350 0.44 -2.5 1,649,359 + LRK53_RS07350 0.44 -0.3 1,649,359 + LRK53_RS07350 0.44 +1.6 1,649,359 + LRK53_RS07350 0.44 +1.0 1,649,360 - LRK53_RS07350 0.45 -0.8 1,649,360 - LRK53_RS07350 0.45 -0.1 1,649,360 - LRK53_RS07350 0.45 -0.8 1,649,493 + -0.0 1,649,535 + -0.6 1,649,535 + -0.9 1,649,535 + -1.4 1,649,535 + -0.6 1,649,536 - +0.4 1,649,536 - -0.5 1,649,548 + -0.3 1,649,548 + +0.4 1,649,548 + -1.0 1,649,548 + +2.0 1,649,548 + -0.4 1,649,548 + -1.0 1,649,548 + -0.7 1,649,548 + -0.1 1,649,548 + -0.5 1,649,548 + -0.5 1,649,548 + +0.5 1,649,549 - -1.0 1,649,549 - -0.1 1,649,549 - +2.5 1,649,549 - -0.8 1,649,549 - -0.4 1,649,549 - -0.6 1,649,549 - +1.0
Or see this region's nucleotide sequence