Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05645 and LRK53_RS05650 are separated by 234 nucleotides LRK53_RS05650 and LRK53_RS05655 overlap by 4 nucleotides LRK53_RS05655 and LRK53_RS05660 are separated by 4 nucleotides
LRK53_RS05645: LRK53_RS05645 - kinase, at 1,312,791 to 1,313,621
_RS05645
LRK53_RS05650: LRK53_RS05650 - pyridoxamine 5'-phosphate oxidase, at 1,313,856 to 1,314,443
_RS05650
LRK53_RS05655: LRK53_RS05655 - secondary thiamine-phosphate synthase enzyme YjbQ, at 1,314,440 to 1,314,880
_RS05655
LRK53_RS05660: LRK53_RS05660 - cobalamin-binding protein, at 1,314,885 to 1,315,709
_RS05660
Position (kb)
1314
1315 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1313.475 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.530 kb on + strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.531 kb on - strand, within LRK53_RS05645 at 1313.563 kb on + strand at 1313.782 kb on + strand at 1313.782 kb on + strand at 1313.782 kb on + strand at 1313.782 kb on + strand at 1313.782 kb on + strand at 1313.782 kb on + strand at 1313.783 kb on - strand at 1313.783 kb on - strand at 1313.783 kb on - strand at 1313.783 kb on - strand at 1313.783 kb on - strand at 1313.783 kb on - strand at 1313.875 kb on + strand at 1313.875 kb on + strand at 1313.875 kb on + strand at 1313.875 kb on + strand at 1313.876 kb on - strand at 1313.876 kb on - strand at 1314.778 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.815 kb on + strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.816 kb on - strand, within LRK53_RS05655 at 1314.972 kb on + strand, within LRK53_RS05660 at 1314.973 kb on - strand, within LRK53_RS05660 at 1315.218 kb on + strand, within LRK53_RS05660 at 1315.218 kb on + strand, within LRK53_RS05660 at 1315.218 kb on + strand, within LRK53_RS05660 at 1315.218 kb on + strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.219 kb on - strand, within LRK53_RS05660 at 1315.269 kb on + strand, within LRK53_RS05660 at 1315.269 kb on + strand, within LRK53_RS05660 at 1315.269 kb on + strand, within LRK53_RS05660 at 1315.270 kb on - strand, within LRK53_RS05660 at 1315.270 kb on - strand, within LRK53_RS05660 at 1315.270 kb on - strand, within LRK53_RS05660 at 1315.270 kb on - strand, within LRK53_RS05660 at 1315.292 kb on + strand, within LRK53_RS05660 at 1315.292 kb on + strand, within LRK53_RS05660 at 1315.292 kb on + strand, within LRK53_RS05660 at 1315.293 kb on - strand, within LRK53_RS05660 at 1315.293 kb on - strand, within LRK53_RS05660 at 1315.293 kb on - strand, within LRK53_RS05660 at 1315.344 kb on + strand, within LRK53_RS05660 at 1315.344 kb on + strand, within LRK53_RS05660 at 1315.344 kb on + strand, within LRK53_RS05660 at 1315.344 kb on + strand, within LRK53_RS05660 at 1315.344 kb on + strand, within LRK53_RS05660 at 1315.345 kb on - strand, within LRK53_RS05660 at 1315.345 kb on - strand, within LRK53_RS05660 at 1315.345 kb on - strand, within LRK53_RS05660 at 1315.345 kb on - strand, within LRK53_RS05660 at 1315.345 kb on - strand, within LRK53_RS05660 at 1315.466 kb on + strand, within LRK53_RS05660 at 1315.466 kb on + strand, within LRK53_RS05660 at 1315.466 kb on + strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.467 kb on - strand, within LRK53_RS05660 at 1315.732 kb on + strand at 1315.733 kb on - strand at 1315.733 kb on - strand at 1315.733 kb on - strand at 1315.821 kb on + strand at 1315.821 kb on + strand at 1315.821 kb on + strand at 1315.878 kb on - strand at 1315.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,313,475 + LRK53_RS05645 0.82 -0.8 1,313,530 + LRK53_RS05645 0.89 -0.0 1,313,530 + LRK53_RS05645 0.89 +0.4 1,313,530 + LRK53_RS05645 0.89 -1.6 1,313,530 + LRK53_RS05645 0.89 +1.0 1,313,530 + LRK53_RS05645 0.89 -0.9 1,313,530 + LRK53_RS05645 0.89 +1.0 1,313,530 + LRK53_RS05645 0.89 +1.2 1,313,530 + LRK53_RS05645 0.89 -0.0 1,313,531 - LRK53_RS05645 0.89 -1.2 1,313,531 - LRK53_RS05645 0.89 +0.2 1,313,531 - LRK53_RS05645 0.89 +0.4 1,313,531 - LRK53_RS05645 0.89 +0.2 1,313,531 - LRK53_RS05645 0.89 -0.0 1,313,531 - LRK53_RS05645 0.89 -0.9 1,313,531 - LRK53_RS05645 0.89 -0.9 1,313,531 - LRK53_RS05645 0.89 -2.2 1,313,531 - LRK53_RS05645 0.89 +0.3 1,313,531 - LRK53_RS05645 0.89 +1.0 1,313,531 - LRK53_RS05645 0.89 +0.7 1,313,563 + -0.6 1,313,782 + +0.1 1,313,782 + -2.2 1,313,782 + -0.4 1,313,782 + +0.2 1,313,782 + -0.2 1,313,782 + +3.0 1,313,783 - +0.6 1,313,783 - -0.0 1,313,783 - +1.0 1,313,783 - +0.5 1,313,783 - -0.6 1,313,783 - -0.0 1,313,875 + -1.1 1,313,875 + +1.0 1,313,875 + -0.4 1,313,875 + -0.2 1,313,876 - -1.4 1,313,876 - -0.0 1,314,778 + LRK53_RS05655 0.77 -1.6 1,314,815 + LRK53_RS05655 0.85 +0.2 1,314,815 + LRK53_RS05655 0.85 -0.9 1,314,815 + LRK53_RS05655 0.85 -2.6 1,314,815 + LRK53_RS05655 0.85 +0.4 1,314,815 + LRK53_RS05655 0.85 +0.7 1,314,815 + LRK53_RS05655 0.85 +1.7 1,314,815 + LRK53_RS05655 0.85 +0.5 1,314,815 + LRK53_RS05655 0.85 +2.5 1,314,815 + LRK53_RS05655 0.85 +0.6 1,314,815 + LRK53_RS05655 0.85 -1.2 1,314,815 + LRK53_RS05655 0.85 +0.2 1,314,815 + LRK53_RS05655 0.85 +0.1 1,314,815 + LRK53_RS05655 0.85 +1.3 1,314,815 + LRK53_RS05655 0.85 -1.2 1,314,815 + LRK53_RS05655 0.85 -1.4 1,314,815 + LRK53_RS05655 0.85 +0.4 1,314,815 + LRK53_RS05655 0.85 -0.0 1,314,815 + LRK53_RS05655 0.85 -0.0 1,314,815 + LRK53_RS05655 0.85 -0.7 1,314,815 + LRK53_RS05655 0.85 +0.0 1,314,815 + LRK53_RS05655 0.85 -1.0 1,314,815 + LRK53_RS05655 0.85 -0.8 1,314,815 + LRK53_RS05655 0.85 -0.3 1,314,815 + LRK53_RS05655 0.85 +0.6 1,314,815 + LRK53_RS05655 0.85 +1.6 1,314,815 + LRK53_RS05655 0.85 -1.8 1,314,815 + LRK53_RS05655 0.85 +0.4 1,314,816 - LRK53_RS05655 0.85 +1.0 1,314,816 - LRK53_RS05655 0.85 -0.4 1,314,816 - LRK53_RS05655 0.85 -0.5 1,314,816 - LRK53_RS05655 0.85 -1.2 1,314,816 - LRK53_RS05655 0.85 -0.5 1,314,816 - LRK53_RS05655 0.85 -0.5 1,314,816 - LRK53_RS05655 0.85 +1.0 1,314,816 - LRK53_RS05655 0.85 -0.6 1,314,816 - LRK53_RS05655 0.85 -1.0 1,314,816 - LRK53_RS05655 0.85 +1.0 1,314,816 - LRK53_RS05655 0.85 +0.6 1,314,816 - LRK53_RS05655 0.85 -0.4 1,314,816 - LRK53_RS05655 0.85 -1.0 1,314,816 - LRK53_RS05655 0.85 -1.0 1,314,816 - LRK53_RS05655 0.85 +1.0 1,314,816 - LRK53_RS05655 0.85 +0.5 1,314,816 - LRK53_RS05655 0.85 +1.0 1,314,816 - LRK53_RS05655 0.85 -0.0 1,314,816 - LRK53_RS05655 0.85 +0.2 1,314,816 - LRK53_RS05655 0.85 -0.9 1,314,816 - LRK53_RS05655 0.85 -0.9 1,314,816 - LRK53_RS05655 0.85 +0.0 1,314,816 - LRK53_RS05655 0.85 -1.0 1,314,816 - LRK53_RS05655 0.85 +0.2 1,314,816 - LRK53_RS05655 0.85 -1.8 1,314,972 + LRK53_RS05660 0.11 -0.3 1,314,973 - LRK53_RS05660 0.11 -0.0 1,315,218 + LRK53_RS05660 0.40 -0.3 1,315,218 + LRK53_RS05660 0.40 +1.7 1,315,218 + LRK53_RS05660 0.40 -0.7 1,315,218 + LRK53_RS05660 0.40 -0.0 1,315,219 - LRK53_RS05660 0.40 -1.4 1,315,219 - LRK53_RS05660 0.40 -0.8 1,315,219 - LRK53_RS05660 0.40 +1.0 1,315,219 - LRK53_RS05660 0.40 -0.8 1,315,219 - LRK53_RS05660 0.40 -0.4 1,315,219 - LRK53_RS05660 0.40 -1.2 1,315,269 + LRK53_RS05660 0.47 -0.6 1,315,269 + LRK53_RS05660 0.47 -1.6 1,315,269 + LRK53_RS05660 0.47 +2.5 1,315,270 - LRK53_RS05660 0.47 -0.6 1,315,270 - LRK53_RS05660 0.47 +0.7 1,315,270 - LRK53_RS05660 0.47 -0.6 1,315,270 - LRK53_RS05660 0.47 -1.4 1,315,292 + LRK53_RS05660 0.49 +0.4 1,315,292 + LRK53_RS05660 0.49 -0.0 1,315,292 + LRK53_RS05660 0.49 -0.4 1,315,293 - LRK53_RS05660 0.49 +0.8 1,315,293 - LRK53_RS05660 0.49 -0.8 1,315,293 - LRK53_RS05660 0.49 -0.6 1,315,344 + LRK53_RS05660 0.56 -1.4 1,315,344 + LRK53_RS05660 0.56 -1.8 1,315,344 + LRK53_RS05660 0.56 +0.2 1,315,344 + LRK53_RS05660 0.56 +2.5 1,315,344 + LRK53_RS05660 0.56 -1.4 1,315,345 - LRK53_RS05660 0.56 -0.6 1,315,345 - LRK53_RS05660 0.56 -0.0 1,315,345 - LRK53_RS05660 0.56 +2.8 1,315,345 - LRK53_RS05660 0.56 -1.4 1,315,345 - LRK53_RS05660 0.56 +1.6 1,315,466 + LRK53_RS05660 0.70 -2.0 1,315,466 + LRK53_RS05660 0.70 -0.2 1,315,466 + LRK53_RS05660 0.70 -0.4 1,315,467 - LRK53_RS05660 0.71 -1.6 1,315,467 - LRK53_RS05660 0.71 -1.6 1,315,467 - LRK53_RS05660 0.71 -0.8 1,315,467 - LRK53_RS05660 0.71 +2.0 1,315,467 - LRK53_RS05660 0.71 -0.5 1,315,467 - LRK53_RS05660 0.71 +1.0 1,315,467 - LRK53_RS05660 0.71 -1.0 1,315,732 + -0.8 1,315,733 - -1.4 1,315,733 - -0.3 1,315,733 - +1.0 1,315,821 + -1.4 1,315,821 + -0.2 1,315,821 + -0.4 1,315,878 - +0.4 1,315,878 - +1.3
Or see this region's nucleotide sequence