Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03910

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03900 and LRK53_RS03905 are separated by 162 nucleotidesLRK53_RS03905 and LRK53_RS03910 are separated by 150 nucleotidesLRK53_RS03910 and LRK53_RS03915 overlap by 4 nucleotides LRK53_RS03900: LRK53_RS03900 - NAD(P)/FAD-dependent oxidoreductase, at 914,908 to 916,539 _RS03900 LRK53_RS03905: LRK53_RS03905 - hypothetical protein, at 916,702 to 916,923 _RS03905 LRK53_RS03910: LRK53_RS03910 - DUF1993 domain-containing protein, at 917,074 to 917,580 _RS03910 LRK53_RS03915: LRK53_RS03915 - TCR/Tet family MFS transporter, at 917,577 to 919,127 _RS03915 Position (kb) 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 916.286 kb on + strand, within LRK53_RS03900at 916.286 kb on + strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.287 kb on - strand, within LRK53_RS03900at 916.376 kb on + strandat 916.377 kb on - strandat 916.434 kb on - strandat 916.585 kb on + strandat 916.585 kb on + strandat 916.585 kb on + strandat 916.585 kb on + strandat 916.585 kb on + strandat 916.586 kb on - strandat 916.586 kb on - strandat 916.760 kb on + strand, within LRK53_RS03905at 916.760 kb on + strand, within LRK53_RS03905at 916.760 kb on + strand, within LRK53_RS03905at 916.761 kb on - strand, within LRK53_RS03905at 916.761 kb on - strand, within LRK53_RS03905at 916.761 kb on - strand, within LRK53_RS03905at 916.761 kb on - strand, within LRK53_RS03905at 917.135 kb on + strand, within LRK53_RS03910at 917.186 kb on + strand, within LRK53_RS03910at 917.186 kb on + strand, within LRK53_RS03910at 917.186 kb on + strand, within LRK53_RS03910at 917.186 kb on + strand, within LRK53_RS03910at 917.187 kb on - strand, within LRK53_RS03910at 917.187 kb on - strand, within LRK53_RS03910at 917.187 kb on - strand, within LRK53_RS03910at 917.285 kb on + strand, within LRK53_RS03910at 917.285 kb on + strand, within LRK53_RS03910at 917.285 kb on + strand, within LRK53_RS03910at 917.286 kb on - strand, within LRK53_RS03910at 917.286 kb on - strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.312 kb on + strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.313 kb on - strand, within LRK53_RS03910at 917.564 kb on + strandat 917.564 kb on + strandat 917.564 kb on + strandat 917.564 kb on + strandat 917.564 kb on + strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.565 kb on - strandat 917.769 kb on + strand, within LRK53_RS03915at 917.769 kb on + strand, within LRK53_RS03915at 917.770 kb on - strand, within LRK53_RS03915at 917.770 kb on - strand, within LRK53_RS03915at 917.770 kb on - strand, within LRK53_RS03915at 917.833 kb on + strand, within LRK53_RS03915at 917.833 kb on + strand, within LRK53_RS03915at 917.834 kb on - strand, within LRK53_RS03915at 918.055 kb on - strand, within LRK53_RS03915at 918.142 kb on + strand, within LRK53_RS03915at 918.142 kb on + strand, within LRK53_RS03915at 918.143 kb on - strand, within LRK53_RS03915at 918.143 kb on - strand, within LRK53_RS03915at 918.184 kb on + strand, within LRK53_RS03915at 918.185 kb on - strand, within LRK53_RS03915at 918.211 kb on + strand, within LRK53_RS03915at 918.211 kb on + strand, within LRK53_RS03915at 918.211 kb on + strand, within LRK53_RS03915at 918.211 kb on + strand, within LRK53_RS03915at 918.211 kb on + strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.212 kb on - strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.223 kb on + strand, within LRK53_RS03915at 918.224 kb on - strand, within LRK53_RS03915at 918.224 kb on - strand, within LRK53_RS03915at 918.224 kb on - strand, within LRK53_RS03915at 918.224 kb on - strand, within LRK53_RS03915at 918.224 kb on - strand, within LRK53_RS03915at 918.370 kb on + strand, within LRK53_RS03915at 918.370 kb on + strand, within LRK53_RS03915at 918.370 kb on + strand, within LRK53_RS03915at 918.370 kb on + strand, within LRK53_RS03915at 918.370 kb on + strand, within LRK53_RS03915at 918.371 kb on - strand, within LRK53_RS03915at 918.539 kb on + strand, within LRK53_RS03915at 918.540 kb on - strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.541 kb on + strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915at 918.542 kb on - strand, within LRK53_RS03915

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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916,286 + LRK53_RS03900 0.84 -0.0
916,286 + LRK53_RS03900 0.84 -0.3
916,287 - LRK53_RS03900 0.84 -0.7
916,287 - LRK53_RS03900 0.84 -1.0
916,287 - LRK53_RS03900 0.84 -1.6
916,287 - LRK53_RS03900 0.84 -0.0
916,287 - LRK53_RS03900 0.84 -0.6
916,287 - LRK53_RS03900 0.84 -0.1
916,287 - LRK53_RS03900 0.84 -1.6
916,287 - LRK53_RS03900 0.84 -0.1
916,287 - LRK53_RS03900 0.84 +1.2
916,287 - LRK53_RS03900 0.84 -0.0
916,376 + -0.5
916,377 - +0.5
916,434 - -0.2
916,585 + -1.4
916,585 + -1.4
916,585 + -0.3
916,585 + -0.6
916,585 + -0.7
916,586 - +4.5
916,586 - +0.7
916,760 + LRK53_RS03905 0.26 -0.2
916,760 + LRK53_RS03905 0.26 +1.0
916,760 + LRK53_RS03905 0.26 -0.1
916,761 - LRK53_RS03905 0.27 +2.2
916,761 - LRK53_RS03905 0.27 -0.3
916,761 - LRK53_RS03905 0.27 -0.5
916,761 - LRK53_RS03905 0.27 -0.1
917,135 + LRK53_RS03910 0.12 +1.0
917,186 + LRK53_RS03910 0.22 +0.3
917,186 + LRK53_RS03910 0.22 +0.3
917,186 + LRK53_RS03910 0.22 -0.5
917,186 + LRK53_RS03910 0.22 -1.1
917,187 - LRK53_RS03910 0.22 -0.0
917,187 - LRK53_RS03910 0.22 -0.0
917,187 - LRK53_RS03910 0.22 -2.0
917,285 + LRK53_RS03910 0.42 -0.5
917,285 + LRK53_RS03910 0.42 -0.4
917,285 + LRK53_RS03910 0.42 +0.2
917,286 - LRK53_RS03910 0.42 -1.0
917,286 - LRK53_RS03910 0.42 +0.4
917,312 + LRK53_RS03910 0.47 -1.6
917,312 + LRK53_RS03910 0.47 +0.0
917,312 + LRK53_RS03910 0.47 +0.8
917,312 + LRK53_RS03910 0.47 +0.8
917,312 + LRK53_RS03910 0.47 -0.6
917,312 + LRK53_RS03910 0.47 -2.7
917,312 + LRK53_RS03910 0.47 +0.2
917,312 + LRK53_RS03910 0.47 -0.4
917,312 + LRK53_RS03910 0.47 -0.0
917,313 - LRK53_RS03910 0.47 -2.4
917,313 - LRK53_RS03910 0.47 +0.1
917,313 - LRK53_RS03910 0.47 -0.4
917,313 - LRK53_RS03910 0.47 -0.2
917,313 - LRK53_RS03910 0.47 +1.5
917,313 - LRK53_RS03910 0.47 +1.4
917,313 - LRK53_RS03910 0.47 -0.2
917,313 - LRK53_RS03910 0.47 +0.2
917,313 - LRK53_RS03910 0.47 +0.4
917,564 + -2.0
917,564 + -0.3
917,564 + -1.0
917,564 + -2.4
917,564 + -0.3
917,565 - -2.0
917,565 - -0.9
917,565 - -2.5
917,565 - -1.0
917,565 - -1.1
917,565 - +0.5
917,565 - +0.5
917,565 - -0.6
917,565 - -2.0
917,565 - -0.3
917,565 - -0.1
917,565 - -1.6
917,565 - +0.5
917,565 - -0.0
917,565 - -0.5
917,565 - +1.0
917,565 - -0.9
917,565 - -1.4
917,769 + LRK53_RS03915 0.12 -0.7
917,769 + LRK53_RS03915 0.12 +0.1
917,770 - LRK53_RS03915 0.12 -0.9
917,770 - LRK53_RS03915 0.12 -2.0
917,770 - LRK53_RS03915 0.12 -1.4
917,833 + LRK53_RS03915 0.17 +1.0
917,833 + LRK53_RS03915 0.17 -1.6
917,834 - LRK53_RS03915 0.17 +1.2
918,055 - LRK53_RS03915 0.31 +1.0
918,142 + LRK53_RS03915 0.36 -1.4
918,142 + LRK53_RS03915 0.36 +0.0
918,143 - LRK53_RS03915 0.36 -0.9
918,143 - LRK53_RS03915 0.36 -1.0
918,184 + LRK53_RS03915 0.39 -1.5
918,185 - LRK53_RS03915 0.39 -0.9
918,211 + LRK53_RS03915 0.41 +1.0
918,211 + LRK53_RS03915 0.41 +0.5
918,211 + LRK53_RS03915 0.41 -0.5
918,211 + LRK53_RS03915 0.41 -2.4
918,211 + LRK53_RS03915 0.41 -0.2
918,212 - LRK53_RS03915 0.41 +1.5
918,212 - LRK53_RS03915 0.41 +0.6
918,212 - LRK53_RS03915 0.41 -0.5
918,212 - LRK53_RS03915 0.41 -0.6
918,212 - LRK53_RS03915 0.41 -0.1
918,212 - LRK53_RS03915 0.41 -1.6
918,223 + LRK53_RS03915 0.42 -0.6
918,223 + LRK53_RS03915 0.42 +0.6
918,223 + LRK53_RS03915 0.42 +0.4
918,223 + LRK53_RS03915 0.42 -0.4
918,223 + LRK53_RS03915 0.42 +0.5
918,223 + LRK53_RS03915 0.42 -0.4
918,224 - LRK53_RS03915 0.42 -0.0
918,224 - LRK53_RS03915 0.42 -0.3
918,224 - LRK53_RS03915 0.42 +1.0
918,224 - LRK53_RS03915 0.42 +0.6
918,224 - LRK53_RS03915 0.42 -1.0
918,370 + LRK53_RS03915 0.51 -0.0
918,370 + LRK53_RS03915 0.51 +0.6
918,370 + LRK53_RS03915 0.51 -1.5
918,370 + LRK53_RS03915 0.51 -0.6
918,370 + LRK53_RS03915 0.51 -1.4
918,371 - LRK53_RS03915 0.51 -0.2
918,539 + LRK53_RS03915 0.62 -0.6
918,540 - LRK53_RS03915 0.62 +0.6
918,541 + LRK53_RS03915 0.62 +0.3
918,541 + LRK53_RS03915 0.62 -1.2
918,541 + LRK53_RS03915 0.62 -0.1
918,541 + LRK53_RS03915 0.62 -0.5
918,541 + LRK53_RS03915 0.62 -0.0
918,541 + LRK53_RS03915 0.62 +0.5
918,541 + LRK53_RS03915 0.62 +0.5
918,541 + LRK53_RS03915 0.62 -1.0
918,541 + LRK53_RS03915 0.62 -1.4
918,541 + LRK53_RS03915 0.62 +0.0
918,541 + LRK53_RS03915 0.62 -0.4
918,541 + LRK53_RS03915 0.62 -1.9
918,541 + LRK53_RS03915 0.62 +2.0
918,541 + LRK53_RS03915 0.62 -0.5
918,541 + LRK53_RS03915 0.62 -1.4
918,541 + LRK53_RS03915 0.62 +1.0
918,541 + LRK53_RS03915 0.62 +0.1
918,541 + LRK53_RS03915 0.62 +1.0
918,541 + LRK53_RS03915 0.62 -0.3
918,541 + LRK53_RS03915 0.62 -2.5
918,541 + LRK53_RS03915 0.62 +0.4
918,541 + LRK53_RS03915 0.62 +3.3
918,541 + LRK53_RS03915 0.62 -0.4
918,541 + LRK53_RS03915 0.62 -2.7
918,542 - LRK53_RS03915 0.62 -0.8
918,542 - LRK53_RS03915 0.62 +0.1
918,542 - LRK53_RS03915 0.62 -0.0
918,542 - LRK53_RS03915 0.62 -1.2
918,542 - LRK53_RS03915 0.62 +0.8
918,542 - LRK53_RS03915 0.62 -1.0
918,542 - LRK53_RS03915 0.62 +1.0
918,542 - LRK53_RS03915 0.62 -2.9
918,542 - LRK53_RS03915 0.62 +0.3
918,542 - LRK53_RS03915 0.62 +0.2
918,542 - LRK53_RS03915 0.62 +0.8
918,542 - LRK53_RS03915 0.62 +0.2
918,542 - LRK53_RS03915 0.62 -1.9
918,542 - LRK53_RS03915 0.62 +0.2
918,542 - LRK53_RS03915 0.62 +2.0
918,542 - LRK53_RS03915 0.62 +1.5
918,542 - LRK53_RS03915 0.62 -1.1
918,542 - LRK53_RS03915 0.62 +0.5
918,542 - LRK53_RS03915 0.62 -0.5
918,542 - LRK53_RS03915 0.62 -0.6
918,542 - LRK53_RS03915 0.62 -0.6
918,542 - LRK53_RS03915 0.62 -0.8
918,542 - LRK53_RS03915 0.62 +1.0
918,542 - LRK53_RS03915 0.62 -0.2
918,542 - LRK53_RS03915 0.62 +1.0
918,542 - LRK53_RS03915 0.62 -1.1
918,542 - LRK53_RS03915 0.62 +2.5

Or see this region's nucleotide sequence