Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03665

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03655 and LRK53_RS03660 are separated by 7 nucleotidesLRK53_RS03660 and LRK53_RS03665 are separated by 289 nucleotidesLRK53_RS03665 and LRK53_RS03670 are separated by 19 nucleotides LRK53_RS03655: LRK53_RS03655 - DEAD/DEAH box helicase, at 859,400 to 862,417 _RS03655 LRK53_RS03660: LRK53_RS03660 - hypothetical protein, at 862,425 to 862,745 _RS03660 LRK53_RS03665: LRK53_RS03665 - HAD family hydrolase, at 863,035 to 863,718 _RS03665 LRK53_RS03670: LRK53_RS03670 - hypothetical protein, at 863,738 to 864,985 _RS03670 Position (kb) 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 862.038 kb on - strand, within LRK53_RS03655at 862.038 kb on - strand, within LRK53_RS03655at 862.178 kb on + strandat 862.612 kb on + strand, within LRK53_RS03660at 862.612 kb on + strand, within LRK53_RS03660at 862.612 kb on + strand, within LRK53_RS03660at 862.612 kb on + strand, within LRK53_RS03660at 862.612 kb on + strand, within LRK53_RS03660at 862.612 kb on + strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.613 kb on - strand, within LRK53_RS03660at 862.777 kb on + strandat 862.778 kb on - strandat 862.778 kb on - strandat 862.802 kb on + strandat 862.802 kb on + strandat 862.802 kb on + strandat 862.803 kb on - strandat 862.803 kb on - strandat 862.803 kb on - strandat 862.803 kb on - strandat 862.898 kb on + strandat 862.898 kb on + strandat 863.090 kb on + strandat 863.091 kb on - strandat 863.091 kb on - strandat 863.091 kb on - strandat 863.277 kb on + strand, within LRK53_RS03665at 863.278 kb on - strand, within LRK53_RS03665at 863.311 kb on + strand, within LRK53_RS03665at 863.311 kb on + strand, within LRK53_RS03665at 863.312 kb on - strand, within LRK53_RS03665at 863.411 kb on + strand, within LRK53_RS03665at 863.411 kb on + strand, within LRK53_RS03665at 863.412 kb on - strand, within LRK53_RS03665at 863.412 kb on - strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.647 kb on + strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.648 kb on - strand, within LRK53_RS03665at 863.657 kb on + strandat 863.657 kb on + strandat 863.658 kb on - strandat 863.737 kb on - strandat 863.737 kb on - strandat 863.844 kb on + strandat 863.844 kb on + strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 863.845 kb on - strandat 864.366 kb on + strand, within LRK53_RS03670at 864.366 kb on + strand, within LRK53_RS03670at 864.367 kb on - strand, within LRK53_RS03670at 864.367 kb on - strand, within LRK53_RS03670at 864.367 kb on - strand, within LRK53_RS03670at 864.367 kb on - strand, within LRK53_RS03670at 864.367 kb on - strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.486 kb on + strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.487 kb on - strand, within LRK53_RS03670at 864.558 kb on + strand, within LRK53_RS03670at 864.558 kb on + strand, within LRK53_RS03670at 864.559 kb on - strand, within LRK53_RS03670at 864.559 kb on - strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.636 kb on + strand, within LRK53_RS03670at 864.637 kb on - strand, within LRK53_RS03670at 864.637 kb on - strand, within LRK53_RS03670at 864.637 kb on - strand, within LRK53_RS03670at 864.637 kb on - strand, within LRK53_RS03670at 864.637 kb on - strand, within LRK53_RS03670at 864.667 kb on + strand, within LRK53_RS03670at 864.667 kb on + strand, within LRK53_RS03670at 864.667 kb on + strand, within LRK53_RS03670at 864.667 kb on + strand, within LRK53_RS03670at 864.668 kb on - strand, within LRK53_RS03670at 864.668 kb on - strand, within LRK53_RS03670at 864.668 kb on - strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.669 kb on + strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670at 864.670 kb on - strand, within LRK53_RS03670

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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862,038 - LRK53_RS03655 0.87 +0.7
862,038 - LRK53_RS03655 0.87 -0.6
862,178 + +0.3
862,612 + LRK53_RS03660 0.58 -0.8
862,612 + LRK53_RS03660 0.58 +0.5
862,612 + LRK53_RS03660 0.58 -1.8
862,612 + LRK53_RS03660 0.58 +2.6
862,612 + LRK53_RS03660 0.58 +0.3
862,612 + LRK53_RS03660 0.58 -2.0
862,613 - LRK53_RS03660 0.59 +0.0
862,613 - LRK53_RS03660 0.59 +0.2
862,613 - LRK53_RS03660 0.59 -2.5
862,613 - LRK53_RS03660 0.59 +1.0
862,613 - LRK53_RS03660 0.59 +1.0
862,613 - LRK53_RS03660 0.59 -0.5
862,613 - LRK53_RS03660 0.59 -2.7
862,613 - LRK53_RS03660 0.59 -0.0
862,613 - LRK53_RS03660 0.59 -1.3
862,777 + -0.6
862,778 - -0.9
862,778 - -0.2
862,802 + +1.0
862,802 + +2.0
862,802 + -0.9
862,803 - +0.6
862,803 - +1.0
862,803 - -1.3
862,803 - -1.3
862,898 + -0.3
862,898 + +0.4
863,090 + -0.0
863,091 - -0.3
863,091 - +0.1
863,091 - +0.4
863,277 + LRK53_RS03665 0.35 +1.0
863,278 - LRK53_RS03665 0.36 -1.3
863,311 + LRK53_RS03665 0.40 -0.6
863,311 + LRK53_RS03665 0.40 -0.3
863,312 - LRK53_RS03665 0.40 -0.7
863,411 + LRK53_RS03665 0.55 -2.2
863,411 + LRK53_RS03665 0.55 -0.7
863,412 - LRK53_RS03665 0.55 -0.6
863,412 - LRK53_RS03665 0.55 -0.6
863,647 + LRK53_RS03665 0.89 -0.3
863,647 + LRK53_RS03665 0.89 -0.6
863,647 + LRK53_RS03665 0.89 +0.4
863,647 + LRK53_RS03665 0.89 -0.6
863,647 + LRK53_RS03665 0.89 -1.6
863,647 + LRK53_RS03665 0.89 -0.6
863,647 + LRK53_RS03665 0.89 -2.9
863,647 + LRK53_RS03665 0.89 -0.7
863,648 - LRK53_RS03665 0.90 -2.2
863,648 - LRK53_RS03665 0.90 -0.1
863,648 - LRK53_RS03665 0.90 -1.3
863,648 - LRK53_RS03665 0.90 -0.0
863,648 - LRK53_RS03665 0.90 +1.3
863,648 - LRK53_RS03665 0.90 -0.5
863,648 - LRK53_RS03665 0.90 -1.3
863,657 + -0.1
863,657 + +3.1
863,658 - +1.0
863,737 - -1.0
863,737 - -1.0
863,844 + -0.3
863,844 + -0.2
863,845 - -0.6
863,845 - -0.4
863,845 - +0.7
863,845 - +0.4
863,845 - -0.2
863,845 - -0.7
863,845 - -0.5
863,845 - -1.1
863,845 - -2.5
864,366 + LRK53_RS03670 0.50 -1.3
864,366 + LRK53_RS03670 0.50 -1.6
864,367 - LRK53_RS03670 0.50 -0.0
864,367 - LRK53_RS03670 0.50 -0.6
864,367 - LRK53_RS03670 0.50 +0.2
864,367 - LRK53_RS03670 0.50 -0.7
864,367 - LRK53_RS03670 0.50 -1.0
864,486 + LRK53_RS03670 0.60 +0.4
864,486 + LRK53_RS03670 0.60 -1.4
864,486 + LRK53_RS03670 0.60 -0.6
864,486 + LRK53_RS03670 0.60 -2.3
864,486 + LRK53_RS03670 0.60 -1.1
864,486 + LRK53_RS03670 0.60 -0.4
864,486 + LRK53_RS03670 0.60 -1.0
864,487 - LRK53_RS03670 0.60 -1.7
864,487 - LRK53_RS03670 0.60 -2.0
864,487 - LRK53_RS03670 0.60 -0.6
864,487 - LRK53_RS03670 0.60 -1.0
864,487 - LRK53_RS03670 0.60 -0.3
864,487 - LRK53_RS03670 0.60 +0.1
864,487 - LRK53_RS03670 0.60 -1.3
864,558 + LRK53_RS03670 0.66 +0.2
864,558 + LRK53_RS03670 0.66 +1.8
864,559 - LRK53_RS03670 0.66 -0.1
864,559 - LRK53_RS03670 0.66 -1.3
864,636 + LRK53_RS03670 0.72 -0.0
864,636 + LRK53_RS03670 0.72 +1.8
864,636 + LRK53_RS03670 0.72 -1.3
864,636 + LRK53_RS03670 0.72 -0.9
864,636 + LRK53_RS03670 0.72 +0.8
864,636 + LRK53_RS03670 0.72 -0.9
864,636 + LRK53_RS03670 0.72 -0.7
864,636 + LRK53_RS03670 0.72 -0.6
864,636 + LRK53_RS03670 0.72 -0.6
864,636 + LRK53_RS03670 0.72 -0.7
864,637 - LRK53_RS03670 0.72 -0.1
864,637 - LRK53_RS03670 0.72 +1.3
864,637 - LRK53_RS03670 0.72 -2.8
864,637 - LRK53_RS03670 0.72 +1.6
864,637 - LRK53_RS03670 0.72 -2.8
864,667 + LRK53_RS03670 0.74 -0.6
864,667 + LRK53_RS03670 0.74 -1.7
864,667 + LRK53_RS03670 0.74 +1.0
864,667 + LRK53_RS03670 0.74 -0.9
864,668 - LRK53_RS03670 0.75 -1.8
864,668 - LRK53_RS03670 0.75 -1.6
864,668 - LRK53_RS03670 0.75 +0.6
864,669 + LRK53_RS03670 0.75 -0.6
864,669 + LRK53_RS03670 0.75 -1.2
864,669 + LRK53_RS03670 0.75 +0.1
864,669 + LRK53_RS03670 0.75 +1.0
864,669 + LRK53_RS03670 0.75 -1.0
864,669 + LRK53_RS03670 0.75 -0.3
864,669 + LRK53_RS03670 0.75 -0.4
864,669 + LRK53_RS03670 0.75 +0.1
864,669 + LRK53_RS03670 0.75 -0.6
864,669 + LRK53_RS03670 0.75 -0.2
864,669 + LRK53_RS03670 0.75 -0.8
864,669 + LRK53_RS03670 0.75 -1.2
864,669 + LRK53_RS03670 0.75 +0.7
864,669 + LRK53_RS03670 0.75 -1.5
864,669 + LRK53_RS03670 0.75 -2.5
864,669 + LRK53_RS03670 0.75 -0.7
864,669 + LRK53_RS03670 0.75 +2.0
864,669 + LRK53_RS03670 0.75 -0.6
864,669 + LRK53_RS03670 0.75 -2.9
864,669 + LRK53_RS03670 0.75 +1.3
864,669 + LRK53_RS03670 0.75 -0.4
864,669 + LRK53_RS03670 0.75 -1.3
864,669 + LRK53_RS03670 0.75 -2.1
864,669 + LRK53_RS03670 0.75 +0.8
864,669 + LRK53_RS03670 0.75 -1.1
864,669 + LRK53_RS03670 0.75 -0.6
864,669 + LRK53_RS03670 0.75 -2.2
864,669 + LRK53_RS03670 0.75 -0.3
864,669 + LRK53_RS03670 0.75 -0.8
864,670 - LRK53_RS03670 0.75 +0.4
864,670 - LRK53_RS03670 0.75 -2.3
864,670 - LRK53_RS03670 0.75 -0.4
864,670 - LRK53_RS03670 0.75 -0.6
864,670 - LRK53_RS03670 0.75 +0.6
864,670 - LRK53_RS03670 0.75 -0.2
864,670 - LRK53_RS03670 0.75 -0.0
864,670 - LRK53_RS03670 0.75 +1.0
864,670 - LRK53_RS03670 0.75 -1.2
864,670 - LRK53_RS03670 0.75 -0.3
864,670 - LRK53_RS03670 0.75 +3.0
864,670 - LRK53_RS03670 0.75 -0.6
864,670 - LRK53_RS03670 0.75 -1.3
864,670 - LRK53_RS03670 0.75 -0.4
864,670 - LRK53_RS03670 0.75 -0.4
864,670 - LRK53_RS03670 0.75 -0.4
864,670 - LRK53_RS03670 0.75 +1.6
864,670 - LRK53_RS03670 0.75 +1.0
864,670 - LRK53_RS03670 0.75 +1.9
864,670 - LRK53_RS03670 0.75 -0.0
864,670 - LRK53_RS03670 0.75 -1.1
864,670 - LRK53_RS03670 0.75 -1.5
864,670 - LRK53_RS03670 0.75 +1.0
864,670 - LRK53_RS03670 0.75 +1.1
864,670 - LRK53_RS03670 0.75 +0.5
864,670 - LRK53_RS03670 0.75 -1.5
864,670 - LRK53_RS03670 0.75 -1.4
864,670 - LRK53_RS03670 0.75 +1.8
864,670 - LRK53_RS03670 0.75 +0.3
864,670 - LRK53_RS03670 0.75 -1.0
864,670 - LRK53_RS03670 0.75 +1.6
864,670 - LRK53_RS03670 0.75 +0.2
864,670 - LRK53_RS03670 0.75 -0.6

Or see this region's nucleotide sequence