Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01650 and LRK53_RS01655 are separated by 251 nucleotides LRK53_RS01655 and LRK53_RS01660 are separated by 129 nucleotides LRK53_RS01660 and LRK53_RS01665 are separated by 176 nucleotides
LRK53_RS01650: LRK53_RS01650 - chaperonin GroEL, at 388,288 to 389,937
_RS01650
LRK53_RS01655: LRK53_RS01655 - hypothetical protein, at 390,189 to 390,332
_RS01655
LRK53_RS01660: LRK53_RS01660 - hypothetical protein, at 390,462 to 390,995
_RS01660
LRK53_RS01665: LRK53_RS01665 - LTA synthase family protein, at 391,172 to 393,061
_RS01665
Position (kb) 390
391 Strain fitness (log2 ratio) -2
-1
0
1 at 390.081 kb on - strand at 390.081 kb on - strand at 390.246 kb on - strand, within LRK53_RS01655 at 390.282 kb on + strand, within LRK53_RS01655 at 390.283 kb on - strand, within LRK53_RS01655 at 390.283 kb on - strand, within LRK53_RS01655 at 390.290 kb on + strand, within LRK53_RS01655 at 390.290 kb on + strand, within LRK53_RS01655 at 390.290 kb on + strand, within LRK53_RS01655 at 390.291 kb on - strand, within LRK53_RS01655 at 390.291 kb on - strand, within LRK53_RS01655 at 390.291 kb on - strand, within LRK53_RS01655 at 390.291 kb on - strand, within LRK53_RS01655 at 390.291 kb on - strand, within LRK53_RS01655 at 390.296 kb on + strand, within LRK53_RS01655 at 390.296 kb on + strand, within LRK53_RS01655 at 390.296 kb on + strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.297 kb on - strand, within LRK53_RS01655 at 390.337 kb on + strand at 390.337 kb on + strand at 390.337 kb on + strand at 390.337 kb on + strand at 390.337 kb on + strand at 390.337 kb on + strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.407 kb on + strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.408 kb on - strand at 390.795 kb on + strand, within LRK53_RS01660 at 390.796 kb on - strand, within LRK53_RS01660 at 390.796 kb on - strand, within LRK53_RS01660 at 390.796 kb on - strand, within LRK53_RS01660 at 390.796 kb on - strand, within LRK53_RS01660 at 390.951 kb on + strand at 390.951 kb on + strand at 390.951 kb on + strand at 390.951 kb on + strand at 390.951 kb on + strand at 390.952 kb on - strand at 390.952 kb on - strand at 390.952 kb on - strand at 390.952 kb on - strand at 390.952 kb on - strand at 391.070 kb on - strand at 391.070 kb on - strand at 391.070 kb on - strand at 391.070 kb on - strand at 391.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 390,081 - +0.3 390,081 - -0.7 390,246 - LRK53_RS01655 0.40 +0.1 390,282 + LRK53_RS01655 0.65 -1.8 390,283 - LRK53_RS01655 0.65 -0.9 390,283 - LRK53_RS01655 0.65 -0.5 390,290 + LRK53_RS01655 0.70 +0.5 390,290 + LRK53_RS01655 0.70 -1.6 390,290 + LRK53_RS01655 0.70 +0.2 390,291 - LRK53_RS01655 0.71 -1.3 390,291 - LRK53_RS01655 0.71 -0.6 390,291 - LRK53_RS01655 0.71 -1.7 390,291 - LRK53_RS01655 0.71 -0.8 390,291 - LRK53_RS01655 0.71 -0.6 390,296 + LRK53_RS01655 0.74 -2.1 390,296 + LRK53_RS01655 0.74 +0.1 390,296 + LRK53_RS01655 0.74 -1.4 390,297 - LRK53_RS01655 0.75 +0.0 390,297 - LRK53_RS01655 0.75 -1.6 390,297 - LRK53_RS01655 0.75 -1.1 390,297 - LRK53_RS01655 0.75 +0.0 390,297 - LRK53_RS01655 0.75 +0.2 390,297 - LRK53_RS01655 0.75 -0.6 390,297 - LRK53_RS01655 0.75 +0.2 390,337 + +0.0 390,337 + -1.8 390,337 + -0.2 390,337 + +1.0 390,337 + -2.0 390,337 + +0.0 390,338 - +0.0 390,338 - -1.5 390,338 - -1.1 390,338 - +0.2 390,407 + -0.3 390,407 + -2.0 390,407 + -0.6 390,407 + -1.8 390,407 + +0.6 390,407 + +0.8 390,407 + -0.2 390,408 - -0.3 390,408 - -1.6 390,408 - +0.4 390,408 - +0.5 390,408 - +1.2 390,408 - -0.6 390,408 - -0.3 390,408 - -0.3 390,408 - -0.8 390,408 - -0.2 390,408 - -1.6 390,408 - -0.2 390,795 + LRK53_RS01660 0.62 -0.4 390,796 - LRK53_RS01660 0.63 +1.0 390,796 - LRK53_RS01660 0.63 -0.9 390,796 - LRK53_RS01660 0.63 +0.0 390,796 - LRK53_RS01660 0.63 +0.4 390,951 + -0.6 390,951 + +1.6 390,951 + -1.8 390,951 + -1.2 390,951 + +0.0 390,952 - -0.8 390,952 - -2.6 390,952 - -1.0 390,952 - -1.3 390,952 - +0.3 391,070 - +0.4 391,070 - -1.3 391,070 - -0.6 391,070 - -0.5 391,070 - +1.4
Or see this region's nucleotide sequence