Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00555

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00550 and LRK53_RS00555 are separated by 155 nucleotidesLRK53_RS00555 and LRK53_RS00560 are separated by 170 nucleotides LRK53_RS00550: LRK53_RS00550 - serine kinase, at 121,567 to 122,589 _RS00550 LRK53_RS00555: LRK53_RS00555 - peroxiredoxin, at 122,745 to 123,353 _RS00555 LRK53_RS00560: LRK53_RS00560 - ABC transporter ATP-binding protein/permease, at 123,524 to 125,290 _RS00560 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.885 kb on + strand, within LRK53_RS00550at 121.886 kb on - strand, within LRK53_RS00550at 121.886 kb on - strand, within LRK53_RS00550at 121.955 kb on - strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.197 kb on + strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.198 kb on - strand, within LRK53_RS00550at 122.464 kb on + strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.465 kb on - strand, within LRK53_RS00550at 122.614 kb on + strandat 122.615 kb on - strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.934 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.082 kb on - strand, within LRK53_RS00555at 123.082 kb on - strand, within LRK53_RS00555at 123.138 kb on + strand, within LRK53_RS00555at 123.138 kb on + strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.626 kb on + strandat 123.626 kb on + strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.962 kb on - strand, within LRK53_RS00560at 123.962 kb on - strand, within LRK53_RS00560at 123.962 kb on - strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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121,885 + LRK53_RS00550 0.31 +0.0
121,885 + LRK53_RS00550 0.31 -1.8
121,885 + LRK53_RS00550 0.31 +0.0
121,885 + LRK53_RS00550 0.31 +0.1
121,885 + LRK53_RS00550 0.31 -0.8
121,885 + LRK53_RS00550 0.31 -2.4
121,885 + LRK53_RS00550 0.31 +1.0
121,885 + LRK53_RS00550 0.31 -0.3
121,885 + LRK53_RS00550 0.31 -0.2
121,886 - LRK53_RS00550 0.31 +0.6
121,886 - LRK53_RS00550 0.31 +0.0
121,955 - LRK53_RS00550 0.38 +0.5
122,197 + LRK53_RS00550 0.62 +1.0
122,197 + LRK53_RS00550 0.62 -1.5
122,197 + LRK53_RS00550 0.62 +0.0
122,197 + LRK53_RS00550 0.62 -0.6
122,197 + LRK53_RS00550 0.62 -0.7
122,197 + LRK53_RS00550 0.62 -0.3
122,198 - LRK53_RS00550 0.62 +0.3
122,198 - LRK53_RS00550 0.62 -0.9
122,198 - LRK53_RS00550 0.62 -0.5
122,198 - LRK53_RS00550 0.62 +1.0
122,198 - LRK53_RS00550 0.62 -1.8
122,198 - LRK53_RS00550 0.62 -1.0
122,198 - LRK53_RS00550 0.62 -0.4
122,198 - LRK53_RS00550 0.62 -0.8
122,198 - LRK53_RS00550 0.62 -0.1
122,464 + LRK53_RS00550 0.88 -0.8
122,465 - LRK53_RS00550 0.88 +1.0
122,465 - LRK53_RS00550 0.88 +0.5
122,465 - LRK53_RS00550 0.88 +2.4
122,465 - LRK53_RS00550 0.88 -0.5
122,465 - LRK53_RS00550 0.88 +0.3
122,465 - LRK53_RS00550 0.88 -0.5
122,614 + +2.0
122,615 - +0.0
122,650 + -2.1
122,650 + -0.3
122,650 + -0.5
122,650 + +3.6
122,650 + -1.3
122,651 - +1.6
122,651 - -1.7
122,651 - +0.6
122,651 - -0.2
122,928 + LRK53_RS00555 0.30 +0.6
122,928 + LRK53_RS00555 0.30 +1.5
122,928 + LRK53_RS00555 0.30 +1.6
122,928 + LRK53_RS00555 0.30 -0.5
122,928 + LRK53_RS00555 0.30 +0.0
122,928 + LRK53_RS00555 0.30 -0.9
122,928 + LRK53_RS00555 0.30 -2.1
122,928 + LRK53_RS00555 0.30 -2.9
122,928 + LRK53_RS00555 0.30 -0.4
122,928 + LRK53_RS00555 0.30 -0.7
122,928 + LRK53_RS00555 0.30 +0.8
122,928 + LRK53_RS00555 0.30 -0.5
122,928 + LRK53_RS00555 0.30 -0.3
122,928 + LRK53_RS00555 0.30 -0.8
122,928 + LRK53_RS00555 0.30 -0.0
122,928 + LRK53_RS00555 0.30 +1.0
122,928 + LRK53_RS00555 0.30 -1.3
122,928 + LRK53_RS00555 0.30 -2.3
122,928 + LRK53_RS00555 0.30 +0.5
122,928 + LRK53_RS00555 0.30 +0.0
122,928 + LRK53_RS00555 0.30 -0.5
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 +0.4
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -0.4
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -1.4
122,929 - LRK53_RS00555 0.30 -0.4
122,929 - LRK53_RS00555 0.30 +0.1
122,929 - LRK53_RS00555 0.30 -1.2
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 +0.9
122,929 - LRK53_RS00555 0.30 -1.0
122,929 - LRK53_RS00555 0.30 -0.4
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 -0.8
122,929 - LRK53_RS00555 0.30 +0.0
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 +0.6
122,929 - LRK53_RS00555 0.30 -2.3
122,929 - LRK53_RS00555 0.30 +0.4
122,929 - LRK53_RS00555 0.30 +1.5
122,929 - LRK53_RS00555 0.30 +1.0
122,929 - LRK53_RS00555 0.30 -0.2
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -0.3
122,929 - LRK53_RS00555 0.30 +1.3
122,929 - LRK53_RS00555 0.30 -0.5
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 -1.1
122,929 - LRK53_RS00555 0.30 -0.7
122,929 - LRK53_RS00555 0.30 -2.1
122,929 - LRK53_RS00555 0.30 +0.5
122,929 - LRK53_RS00555 0.30 -0.2
122,929 - LRK53_RS00555 0.30 -0.6
122,934 + LRK53_RS00555 0.31 -0.5
123,081 + LRK53_RS00555 0.55 -2.3
123,081 + LRK53_RS00555 0.55 +0.8
123,081 + LRK53_RS00555 0.55 -0.1
123,081 + LRK53_RS00555 0.55 -1.3
123,081 + LRK53_RS00555 0.55 +0.5
123,082 - LRK53_RS00555 0.55 -0.5
123,082 - LRK53_RS00555 0.55 -0.2
123,138 + LRK53_RS00555 0.65 -2.4
123,138 + LRK53_RS00555 0.65 -1.3
123,139 - LRK53_RS00555 0.65 +0.6
123,139 - LRK53_RS00555 0.65 -1.0
123,139 - LRK53_RS00555 0.65 -0.1
123,139 - LRK53_RS00555 0.65 -0.4
123,139 - LRK53_RS00555 0.65 -1.1
123,139 - LRK53_RS00555 0.65 -0.3
123,626 + -0.4
123,626 + -0.9
123,627 - +1.0
123,627 - -1.5
123,627 - +1.0
123,627 - -2.1
123,627 - +0.4
123,627 - -0.7
123,627 - +0.2
123,962 - LRK53_RS00560 0.25 +0.0
123,962 - LRK53_RS00560 0.25 -0.5
123,962 - LRK53_RS00560 0.25 -0.5
124,142 + LRK53_RS00560 0.35 -1.0
124,142 + LRK53_RS00560 0.35 +1.6
124,142 + LRK53_RS00560 0.35 -0.2
124,142 + LRK53_RS00560 0.35 -1.8
124,143 - LRK53_RS00560 0.35 +1.0
124,143 - LRK53_RS00560 0.35 -1.0
124,143 - LRK53_RS00560 0.35 -1.5
124,244 + LRK53_RS00560 0.41 +1.0
124,244 + LRK53_RS00560 0.41 -1.3
124,244 + LRK53_RS00560 0.41 +1.0
124,244 + LRK53_RS00560 0.41 -0.3
124,244 + LRK53_RS00560 0.41 +1.4
124,244 + LRK53_RS00560 0.41 +0.6
124,244 + LRK53_RS00560 0.41 +0.4
124,245 - LRK53_RS00560 0.41 -0.1
124,245 - LRK53_RS00560 0.41 +1.8
124,245 - LRK53_RS00560 0.41 -1.3
124,245 - LRK53_RS00560 0.41 +3.0
124,245 - LRK53_RS00560 0.41 -0.8
124,245 - LRK53_RS00560 0.41 +0.5
124,245 - LRK53_RS00560 0.41 +1.0
124,245 - LRK53_RS00560 0.41 +0.6

Or see this region's nucleotide sequence