Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00435

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00425 and LRK53_RS00430 are separated by 262 nucleotidesLRK53_RS00430 and LRK53_RS00435 are separated by 117 nucleotidesLRK53_RS00435 and LRK53_RS00440 overlap by 4 nucleotidesLRK53_RS00440 and LRK53_RS00445 overlap by 4 nucleotides LRK53_RS00425: LRK53_RS00425 - mercuric reductase, at 95,268 to 96,680 _RS00425 LRK53_RS00430: LRK53_RS00430 - conjugal transfer protein TraR, at 96,943 to 97,338 _RS00430 LRK53_RS00435: LRK53_RS00435 - S8 family serine peptidase, at 97,456 to 98,742 _RS00435 LRK53_RS00440: LRK53_RS00440 - hypothetical protein, at 98,739 to 99,371 _RS00440 LRK53_RS00445: LRK53_RS00445 - sigma-70 family RNA polymerase sigma factor, at 99,368 to 99,952 _RS00445 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.619 kb on + strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.620 kb on - strandat 96.658 kb on + strandat 96.658 kb on + strandat 96.659 kb on - strandat 96.659 kb on - strandat 96.659 kb on - strandat 96.659 kb on - strandat 96.700 kb on - strandat 96.732 kb on + strandat 96.732 kb on + strandat 96.746 kb on + strandat 96.747 kb on - strandat 96.751 kb on + strandat 96.751 kb on + strandat 96.751 kb on + strandat 96.751 kb on + strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.891 kb on - strandat 96.945 kb on - strandat 97.058 kb on + strand, within LRK53_RS00430at 97.058 kb on + strand, within LRK53_RS00430at 97.058 kb on + strand, within LRK53_RS00430at 97.059 kb on - strand, within LRK53_RS00430at 97.380 kb on + strandat 97.380 kb on + strandat 97.380 kb on + strandat 97.380 kb on + strandat 97.380 kb on + strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.381 kb on - strandat 97.413 kb on - strandat 97.546 kb on + strandat 97.547 kb on - strandat 97.547 kb on - strandat 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.277 kb on - strand, within LRK53_RS00435at 98.277 kb on - strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.289 kb on - strand, within LRK53_RS00435at 98.318 kb on + strand, within LRK53_RS00435at 98.327 kb on + strand, within LRK53_RS00435at 98.429 kb on + strand, within LRK53_RS00435at 98.429 kb on + strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.528 kb on + strand, within LRK53_RS00435at 98.528 kb on + strand, within LRK53_RS00435at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.843 kb on - strand, within LRK53_RS00440at 99.669 kb on + strand, within LRK53_RS00445at 99.670 kb on - strand, within LRK53_RS00445

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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96,619 + +0.4
96,619 + +2.8
96,619 + -2.7
96,619 + -0.2
96,619 + -0.2
96,619 + -0.7
96,619 + -0.8
96,619 + -0.5
96,619 + -0.4
96,620 - +0.2
96,620 - -0.5
96,620 - -0.1
96,620 - -0.5
96,620 - +2.0
96,620 - +1.0
96,620 - -0.4
96,658 + +0.6
96,658 + -1.5
96,659 - -0.5
96,659 - -0.1
96,659 - -1.8
96,659 - -0.8
96,700 - -0.5
96,732 + +0.2
96,732 + +0.7
96,746 + -1.3
96,747 - +0.6
96,751 + +1.0
96,751 + -1.2
96,751 + +0.5
96,751 + +0.0
96,752 - +0.9
96,752 - +0.0
96,752 - -0.1
96,752 - +0.5
96,752 - +0.2
96,891 - -1.5
96,945 - -0.6
97,058 + LRK53_RS00430 0.29 -0.9
97,058 + LRK53_RS00430 0.29 -0.6
97,058 + LRK53_RS00430 0.29 +2.8
97,059 - LRK53_RS00430 0.29 +0.0
97,380 + -0.5
97,380 + -0.3
97,380 + -1.0
97,380 + +1.5
97,380 + -0.1
97,381 - -1.5
97,381 - -0.1
97,381 - -0.7
97,381 - -0.4
97,381 - -1.1
97,381 - -0.4
97,381 - +0.0
97,413 - -0.2
97,546 + +0.7
97,547 - -1.1
97,547 - -0.8
97,997 + LRK53_RS00435 0.42 +0.2
97,997 + LRK53_RS00435 0.42 -1.4
97,997 + LRK53_RS00435 0.42 +1.4
97,997 + LRK53_RS00435 0.42 -2.7
97,997 + LRK53_RS00435 0.42 +0.2
97,997 + LRK53_RS00435 0.42 -1.0
97,997 + LRK53_RS00435 0.42 +0.0
97,998 - LRK53_RS00435 0.42 +1.4
97,998 - LRK53_RS00435 0.42 +0.7
97,998 - LRK53_RS00435 0.42 +1.0
98,276 + LRK53_RS00435 0.64 -1.7
98,276 + LRK53_RS00435 0.64 +1.0
98,276 + LRK53_RS00435 0.64 +0.5
98,277 - LRK53_RS00435 0.64 +0.5
98,277 - LRK53_RS00435 0.64 +0.4
98,288 + LRK53_RS00435 0.65 -1.0
98,288 + LRK53_RS00435 0.65 +1.4
98,288 + LRK53_RS00435 0.65 -0.1
98,288 + LRK53_RS00435 0.65 -0.4
98,288 + LRK53_RS00435 0.65 -1.4
98,288 + LRK53_RS00435 0.65 -0.5
98,288 + LRK53_RS00435 0.65 -0.8
98,289 - LRK53_RS00435 0.65 -1.0
98,318 + LRK53_RS00435 0.67 +0.0
98,327 + LRK53_RS00435 0.68 +0.3
98,429 + LRK53_RS00435 0.76 -0.5
98,429 + LRK53_RS00435 0.76 -0.8
98,430 - LRK53_RS00435 0.76 -0.5
98,430 - LRK53_RS00435 0.76 -0.3
98,430 - LRK53_RS00435 0.76 +1.1
98,430 - LRK53_RS00435 0.76 -0.3
98,528 + LRK53_RS00435 0.83 +0.2
98,528 + LRK53_RS00435 0.83 -0.5
98,840 + LRK53_RS00440 0.16 +0.2
98,840 + LRK53_RS00440 0.16 -0.4
98,840 + LRK53_RS00440 0.16 +0.5
98,840 + LRK53_RS00440 0.16 -2.1
98,840 + LRK53_RS00440 0.16 -0.4
98,841 - LRK53_RS00440 0.16 -0.5
98,841 - LRK53_RS00440 0.16 +1.0
98,841 - LRK53_RS00440 0.16 +0.3
98,841 - LRK53_RS00440 0.16 +0.0
98,841 - LRK53_RS00440 0.16 +0.0
98,841 - LRK53_RS00440 0.16 -0.5
98,841 - LRK53_RS00440 0.16 +1.0
98,843 - LRK53_RS00440 0.16 +1.0
99,669 + LRK53_RS00445 0.51 -0.1
99,670 - LRK53_RS00445 0.52 -0.7

Or see this region's nucleotide sequence