Strain Fitness in Pseudomonas sp. RS175 around PFR28_02590

Experiment: D,L-Lactate (C) 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02589 and PFR28_02590 are separated by 294 nucleotidesPFR28_02590 and PFR28_02591 are separated by 212 nucleotides PFR28_02589: PFR28_02589 - Sensor histidine kinase RcsC, at 3,066,000 to 3,067,130 _02589 PFR28_02590: PFR28_02590 - hypothetical protein, at 3,067,425 to 3,068,384 _02590 PFR28_02591: PFR28_02591 - hypothetical protein, at 3,068,597 to 3,069,457 _02591 Position (kb) 3067 3068 3069Strain fitness (log2 ratio) -3 -2 -1 0 1at 3066.550 kb on + strand, within PFR28_02589at 3066.550 kb on + strand, within PFR28_02589at 3066.551 kb on - strand, within PFR28_02589at 3066.551 kb on - strand, within PFR28_02589at 3066.674 kb on + strand, within PFR28_02589at 3066.674 kb on + strand, within PFR28_02589at 3066.675 kb on - strand, within PFR28_02589at 3066.703 kb on + strand, within PFR28_02589at 3066.703 kb on + strand, within PFR28_02589at 3066.836 kb on - strand, within PFR28_02589at 3067.057 kb on - strandat 3067.193 kb on + strandat 3067.417 kb on + strandat 3067.417 kb on + strandat 3067.418 kb on - strandat 3067.418 kb on - strandat 3067.600 kb on + strand, within PFR28_02590at 3067.600 kb on + strand, within PFR28_02590at 3067.711 kb on - strand, within PFR28_02590at 3067.711 kb on - strand, within PFR28_02590at 3068.148 kb on + strand, within PFR28_02590at 3068.148 kb on + strand, within PFR28_02590at 3068.149 kb on - strand, within PFR28_02590at 3068.149 kb on - strand, within PFR28_02590at 3068.511 kb on + strandat 3068.914 kb on - strand, within PFR28_02591at 3068.955 kb on - strand, within PFR28_02591at 3069.000 kb on + strand, within PFR28_02591at 3069.001 kb on - strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.200 kb on + strand, within PFR28_02591at 3069.201 kb on - strand, within PFR28_02591at 3069.201 kb on - strand, within PFR28_02591at 3069.201 kb on - strand, within PFR28_02591at 3069.201 kb on - strand, within PFR28_02591at 3069.201 kb on - strand, within PFR28_02591

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C) 20 mM
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3,066,550 + PFR28_02589 0.49 -0.8
3,066,550 + PFR28_02589 0.49 -0.8
3,066,551 - PFR28_02589 0.49 +0.0
3,066,551 - PFR28_02589 0.49 +0.0
3,066,674 + PFR28_02589 0.60 +1.1
3,066,674 + PFR28_02589 0.60 -0.5
3,066,675 - PFR28_02589 0.60 -0.4
3,066,703 + PFR28_02589 0.62 -0.8
3,066,703 + PFR28_02589 0.62 +0.5
3,066,836 - PFR28_02589 0.74 +0.4
3,067,057 - +0.4
3,067,193 + +0.5
3,067,417 + -1.2
3,067,417 + -0.9
3,067,418 - +0.9
3,067,418 - +0.2
3,067,600 + PFR28_02590 0.18 +0.3
3,067,600 + PFR28_02590 0.18 +0.1
3,067,711 - PFR28_02590 0.30 -0.2
3,067,711 - PFR28_02590 0.30 -2.8
3,068,148 + PFR28_02590 0.75 -0.5
3,068,148 + PFR28_02590 0.75 -0.3
3,068,149 - PFR28_02590 0.75 -1.5
3,068,149 - PFR28_02590 0.75 -0.3
3,068,511 + +0.3
3,068,914 - PFR28_02591 0.37 +0.7
3,068,955 - PFR28_02591 0.42 +0.5
3,069,000 + PFR28_02591 0.47 +0.1
3,069,001 - PFR28_02591 0.47 -0.9
3,069,200 + PFR28_02591 0.70 +0.6
3,069,200 + PFR28_02591 0.70 +0.3
3,069,200 + PFR28_02591 0.70 -0.5
3,069,200 + PFR28_02591 0.70 -0.0
3,069,200 + PFR28_02591 0.70 -0.3
3,069,200 + PFR28_02591 0.70 -1.4
3,069,201 - PFR28_02591 0.70 +0.1
3,069,201 - PFR28_02591 0.70 -1.4
3,069,201 - PFR28_02591 0.70 +0.4
3,069,201 - PFR28_02591 0.70 -0.1
3,069,201 - PFR28_02591 0.70 +0.6

Or see this region's nucleotide sequence