Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18850 and LRK53_RS18855 are separated by 156 nucleotides LRK53_RS18855 and LRK53_RS18860 are separated by 272 nucleotides LRK53_RS18860 and LRK53_RS18865 are separated by 70 nucleotides
LRK53_RS18850: LRK53_RS18850 - type IV conjugative transfer system protein TraL, at 160,764 to 161,054
_RS18850
LRK53_RS18855: LRK53_RS18855 - hypothetical protein, at 161,211 to 161,624
_RS18855
LRK53_RS18860: LRK53_RS18860 - hypothetical protein, at 161,897 to 162,163
_RS18860
LRK53_RS18865: LRK53_RS18865 - conjugal transfer protein TraG N-terminal domain-containing protein, at 162,234 to 165,740
_RS18865
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 160.897 kb on + strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.898 kb on - strand, within LRK53_RS18850 at 160.900 kb on + strand, within LRK53_RS18850 at 160.972 kb on - strand, within LRK53_RS18850 at 161.212 kb on + strand at 161.212 kb on + strand at 161.213 kb on - strand at 161.287 kb on - strand, within LRK53_RS18855 at 161.501 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.569 kb on + strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.570 kb on - strand, within LRK53_RS18855 at 161.594 kb on + strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.595 kb on - strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.615 kb on + strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.616 kb on - strand at 161.752 kb on + strand at 161.789 kb on + strand at 161.790 kb on - strand at 161.804 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.863 kb on + strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.880 kb on + strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand at 161.881 kb on - strand at 162.110 kb on + strand, within LRK53_RS18860 at 162.110 kb on + strand, within LRK53_RS18860 at 162.110 kb on + strand, within LRK53_RS18860 at 162.110 kb on + strand, within LRK53_RS18860 at 162.161 kb on + strand at 162.165 kb on + strand at 162.165 kb on + strand at 162.166 kb on - strand at 162.166 kb on - strand at 162.172 kb on + strand at 162.172 kb on + strand at 162.173 kb on - strand at 162.183 kb on - strand at 162.183 kb on - strand at 162.209 kb on + strand at 162.210 kb on - strand at 162.340 kb on + strand at 162.340 kb on + strand at 162.341 kb on - strand at 162.341 kb on - strand at 162.341 kb on - strand at 162.341 kb on - strand at 162.352 kb on + strand at 162.352 kb on + strand at 162.352 kb on + strand at 162.352 kb on + strand at 162.353 kb on - strand at 162.353 kb on - strand at 162.353 kb on - strand at 162.353 kb on - strand at 162.382 kb on + strand at 162.382 kb on + strand at 162.382 kb on + strand at 162.383 kb on - strand at 162.433 kb on + strand at 162.433 kb on + strand at 162.434 kb on - strand at 162.434 kb on - strand at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.643 kb on + strand, within LRK53_RS18865 at 162.644 kb on - strand, within LRK53_RS18865 at 162.644 kb on - strand, within LRK53_RS18865 at 162.644 kb on - strand, within LRK53_RS18865 at 162.644 kb on - strand, within LRK53_RS18865 at 162.688 kb on + strand, within LRK53_RS18865 at 162.688 kb on + strand, within LRK53_RS18865 at 162.689 kb on - strand, within LRK53_RS18865 at 162.689 kb on - strand, within LRK53_RS18865 at 162.689 kb on - strand, within LRK53_RS18865 at 162.709 kb on + strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.710 kb on - strand, within LRK53_RS18865 at 162.831 kb on - strand, within LRK53_RS18865 at 162.831 kb on - strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.832 kb on + strand, within LRK53_RS18865 at 162.833 kb on - strand, within LRK53_RS18865 at 162.833 kb on - strand, within LRK53_RS18865 at 162.833 kb on - strand, within LRK53_RS18865 at 162.833 kb on - strand, within LRK53_RS18865 at 162.833 kb on - strand, within LRK53_RS18865 at 162.904 kb on - strand, within LRK53_RS18865 at 163.112 kb on + strand, within LRK53_RS18865 at 163.113 kb on - strand, within LRK53_RS18865
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 160,897 + LRK53_RS18850 0.46 +0.0 160,898 - LRK53_RS18850 0.46 -0.8 160,898 - LRK53_RS18850 0.46 +0.4 160,900 + LRK53_RS18850 0.47 -1.0 160,972 - LRK53_RS18850 0.71 -1.8 161,212 + -0.6 161,212 + -0.5 161,213 - +0.6 161,287 - LRK53_RS18855 0.18 +1.6 161,501 + LRK53_RS18855 0.70 +0.0 161,569 + LRK53_RS18855 0.86 -2.3 161,569 + LRK53_RS18855 0.86 +1.0 161,569 + LRK53_RS18855 0.86 +0.5 161,569 + LRK53_RS18855 0.86 +0.8 161,569 + LRK53_RS18855 0.86 -1.5 161,569 + LRK53_RS18855 0.86 -0.4 161,570 - LRK53_RS18855 0.87 -1.3 161,570 - LRK53_RS18855 0.87 -0.6 161,570 - LRK53_RS18855 0.87 +1.0 161,570 - LRK53_RS18855 0.87 -0.8 161,570 - LRK53_RS18855 0.87 -0.6 161,570 - LRK53_RS18855 0.87 -0.4 161,594 + +2.2 161,595 - -1.4 161,595 - -1.3 161,595 - -1.0 161,615 + +1.1 161,615 + +0.4 161,615 + +0.4 161,615 + -0.4 161,615 + -0.5 161,615 + +2.0 161,615 + -0.9 161,615 + -2.6 161,615 + +0.6 161,616 - -1.0 161,616 - -0.3 161,616 - -1.8 161,616 - +3.0 161,616 - +0.5 161,616 - -1.2 161,616 - +2.6 161,616 - -0.6 161,616 - +1.0 161,616 - -1.3 161,616 - +0.0 161,616 - +0.2 161,752 + +2.6 161,789 + +0.4 161,790 - +1.7 161,804 + +1.4 161,863 + +0.1 161,863 + -1.6 161,863 + +0.0 161,863 + +0.8 161,863 + -2.7 161,863 + +0.2 161,863 + -0.1 161,863 + +1.0 161,863 + +0.6 161,863 + -0.7 161,863 + -0.6 161,863 + +0.2 161,863 + +0.3 161,863 + +0.6 161,863 + -1.1 161,864 - -1.0 161,864 - -0.2 161,864 - -0.2 161,864 - -1.8 161,864 - +0.0 161,864 - +0.4 161,864 - -0.5 161,864 - -0.2 161,864 - +1.5 161,864 - -1.3 161,880 + -1.6 161,880 + +1.0 161,880 + -1.6 161,880 + +1.2 161,880 + -1.0 161,880 + +1.0 161,881 - -0.6 161,881 - +0.2 161,881 - +3.0 161,881 - +1.0 161,881 - +0.4 162,110 + LRK53_RS18860 0.80 +0.2 162,110 + LRK53_RS18860 0.80 -1.4 162,110 + LRK53_RS18860 0.80 -0.5 162,110 + LRK53_RS18860 0.80 -2.8 162,161 + +1.0 162,165 + +0.0 162,165 + -0.3 162,166 - -1.7 162,166 - -0.3 162,172 + +0.3 162,172 + -1.0 162,173 - +0.0 162,183 - -1.3 162,183 - -2.0 162,209 + -2.1 162,210 - -0.7 162,340 + +0.4 162,340 + -0.4 162,341 - -2.1 162,341 - -0.4 162,341 - +0.2 162,341 - +1.0 162,352 + -0.3 162,352 + -2.4 162,352 + +0.0 162,352 + -0.8 162,353 - -0.8 162,353 - +2.2 162,353 - -0.6 162,353 - +0.0 162,382 + +1.0 162,382 + -0.5 162,382 + +0.9 162,383 - -1.3 162,433 + +0.4 162,433 + -0.4 162,434 - -0.4 162,434 - -0.3 162,643 + LRK53_RS18865 0.12 -1.8 162,643 + LRK53_RS18865 0.12 -0.6 162,643 + LRK53_RS18865 0.12 -1.0 162,643 + LRK53_RS18865 0.12 -0.6 162,643 + LRK53_RS18865 0.12 -1.0 162,643 + LRK53_RS18865 0.12 -0.3 162,643 + LRK53_RS18865 0.12 +2.0 162,643 + LRK53_RS18865 0.12 -1.6 162,644 - LRK53_RS18865 0.12 -0.6 162,644 - LRK53_RS18865 0.12 -1.0 162,644 - LRK53_RS18865 0.12 -1.3 162,644 - LRK53_RS18865 0.12 +0.3 162,688 + LRK53_RS18865 0.13 +0.4 162,688 + LRK53_RS18865 0.13 +0.1 162,689 - LRK53_RS18865 0.13 -2.3 162,689 - LRK53_RS18865 0.13 -0.8 162,689 - LRK53_RS18865 0.13 +1.4 162,709 + LRK53_RS18865 0.14 -1.8 162,710 - LRK53_RS18865 0.14 -0.4 162,710 - LRK53_RS18865 0.14 -1.2 162,710 - LRK53_RS18865 0.14 -1.3 162,710 - LRK53_RS18865 0.14 -0.3 162,710 - LRK53_RS18865 0.14 -0.6 162,710 - LRK53_RS18865 0.14 +2.2 162,710 - LRK53_RS18865 0.14 -0.6 162,831 - LRK53_RS18865 0.17 -1.4 162,831 - LRK53_RS18865 0.17 -0.5 162,832 + LRK53_RS18865 0.17 -1.0 162,832 + LRK53_RS18865 0.17 +0.0 162,832 + LRK53_RS18865 0.17 +4.0 162,832 + LRK53_RS18865 0.17 -0.4 162,832 + LRK53_RS18865 0.17 +0.3 162,832 + LRK53_RS18865 0.17 +0.0 162,833 - LRK53_RS18865 0.17 -1.3 162,833 - LRK53_RS18865 0.17 +0.5 162,833 - LRK53_RS18865 0.17 -0.6 162,833 - LRK53_RS18865 0.17 -0.6 162,833 - LRK53_RS18865 0.17 +0.9 162,904 - LRK53_RS18865 0.19 +0.5 163,112 + LRK53_RS18865 0.25 +0.5 163,113 - LRK53_RS18865 0.25 +2.9
Or see this region's nucleotide sequence