Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18405 and LRK53_RS18410 are separated by 157 nucleotides LRK53_RS18410 and LRK53_RS18415 are separated by 24 nucleotides LRK53_RS18415 and LRK53_RS18420 are separated by 137 nucleotides
LRK53_RS18405: LRK53_RS18405 - ATP-dependent helicase, at 54,755 to 57,094
_RS18405
LRK53_RS18410: LRK53_RS18410 - hypothetical protein, at 57,252 to 58,565
_RS18410
LRK53_RS18415: LRK53_RS18415 - hypothetical protein, at 58,590 to 59,072
_RS18415
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.255 kb on + strand, within LRK53_RS18405 at 56.256 kb on - strand, within LRK53_RS18405 at 56.273 kb on - strand, within LRK53_RS18405 at 56.702 kb on + strand, within LRK53_RS18405 at 56.702 kb on + strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.703 kb on - strand, within LRK53_RS18405 at 56.807 kb on + strand, within LRK53_RS18405 at 56.807 kb on + strand, within LRK53_RS18405 at 56.807 kb on + strand, within LRK53_RS18405 at 56.807 kb on + strand, within LRK53_RS18405 at 56.807 kb on + strand, within LRK53_RS18405 at 56.808 kb on - strand, within LRK53_RS18405 at 56.808 kb on - strand, within LRK53_RS18405 at 56.808 kb on - strand, within LRK53_RS18405 at 56.827 kb on - strand, within LRK53_RS18405 at 56.827 kb on - strand, within LRK53_RS18405 at 56.915 kb on + strand at 56.915 kb on + strand at 56.915 kb on + strand at 56.942 kb on + strand at 56.942 kb on + strand at 56.942 kb on + strand at 56.943 kb on - strand at 56.943 kb on - strand at 56.984 kb on + strand at 56.984 kb on + strand at 56.985 kb on - strand at 57.031 kb on + strand at 57.111 kb on + strand at 57.111 kb on + strand at 57.111 kb on + strand at 57.111 kb on + strand at 57.112 kb on - strand at 57.112 kb on - strand at 57.135 kb on + strand at 57.136 kb on - strand at 57.136 kb on - strand at 57.140 kb on + strand at 57.140 kb on + strand at 57.140 kb on + strand at 57.140 kb on + strand at 57.140 kb on + strand at 57.140 kb on + strand at 57.141 kb on - strand at 57.141 kb on - strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.181 kb on - strand at 57.181 kb on - strand at 57.181 kb on - strand at 57.421 kb on - strand, within LRK53_RS18410 at 57.748 kb on + strand, within LRK53_RS18410 at 57.749 kb on - strand, within LRK53_RS18410 at 57.749 kb on - strand, within LRK53_RS18410 at 58.006 kb on - strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.106 kb on + strand, within LRK53_RS18410 at 58.107 kb on - strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.119 kb on + strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.120 kb on - strand, within LRK53_RS18410 at 58.188 kb on + strand, within LRK53_RS18410 at 58.188 kb on + strand, within LRK53_RS18410 at 58.338 kb on + strand, within LRK53_RS18410 at 58.339 kb on - strand, within LRK53_RS18410 at 58.426 kb on + strand, within LRK53_RS18410 at 58.426 kb on + strand, within LRK53_RS18410 at 58.427 kb on - strand, within LRK53_RS18410 at 58.446 kb on + strand at 58.503 kb on + strand at 58.503 kb on + strand at 58.551 kb on + strand at 58.551 kb on + strand at 58.607 kb on + strand at 58.608 kb on - strand at 58.608 kb on - strand at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.839 kb on + strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 58.840 kb on - strand, within LRK53_RS18415 at 59.093 kb on + strand at 59.093 kb on + strand at 59.094 kb on - strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.288 kb on + strand, within LRK53_RS18420 at 59.499 kb on - strand, within LRK53_RS18420
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 56,255 + LRK53_RS18405 0.64 -1.0 56,255 + LRK53_RS18405 0.64 +0.0 56,255 + LRK53_RS18405 0.64 -0.8 56,255 + LRK53_RS18405 0.64 +0.0 56,255 + LRK53_RS18405 0.64 +1.0 56,255 + LRK53_RS18405 0.64 -0.4 56,255 + LRK53_RS18405 0.64 -0.3 56,256 - LRK53_RS18405 0.64 -0.4 56,273 - LRK53_RS18405 0.65 -1.3 56,702 + LRK53_RS18405 0.83 -1.1 56,702 + LRK53_RS18405 0.83 -2.7 56,703 - LRK53_RS18405 0.83 +1.0 56,703 - LRK53_RS18405 0.83 -2.6 56,703 - LRK53_RS18405 0.83 -1.8 56,703 - LRK53_RS18405 0.83 -0.3 56,703 - LRK53_RS18405 0.83 +1.2 56,703 - LRK53_RS18405 0.83 +0.5 56,807 + LRK53_RS18405 0.88 -0.7 56,807 + LRK53_RS18405 0.88 -1.5 56,807 + LRK53_RS18405 0.88 +0.4 56,807 + LRK53_RS18405 0.88 -1.6 56,807 + LRK53_RS18405 0.88 -0.9 56,808 - LRK53_RS18405 0.88 +0.5 56,808 - LRK53_RS18405 0.88 +0.2 56,808 - LRK53_RS18405 0.88 +2.8 56,827 - LRK53_RS18405 0.89 -0.6 56,827 - LRK53_RS18405 0.89 -2.6 56,915 + +1.0 56,915 + -0.4 56,915 + -1.6 56,942 + -0.5 56,942 + -0.1 56,942 + +2.3 56,943 - -0.3 56,943 - +1.0 56,984 + -0.9 56,984 + -1.6 56,985 - +0.2 57,031 + +1.3 57,111 + +1.5 57,111 + -0.9 57,111 + -1.8 57,111 + +1.0 57,112 - +0.3 57,112 - -0.6 57,135 + -0.2 57,136 - +0.4 57,136 - -0.4 57,140 + -1.0 57,140 + +0.4 57,140 + +0.1 57,140 + -0.4 57,140 + -1.1 57,140 + +0.0 57,141 - -1.7 57,141 - +2.0 57,148 + -0.3 57,148 + +0.2 57,149 - +0.6 57,149 - -0.4 57,149 - +0.7 57,149 - -1.9 57,149 - -0.5 57,181 - +0.0 57,181 - -1.2 57,181 - -0.9 57,421 - LRK53_RS18410 0.13 +1.0 57,748 + LRK53_RS18410 0.38 +0.3 57,749 - LRK53_RS18410 0.38 -0.6 57,749 - LRK53_RS18410 0.38 +3.0 58,006 - LRK53_RS18410 0.57 +0.7 58,106 + LRK53_RS18410 0.65 +0.6 58,106 + LRK53_RS18410 0.65 -0.1 58,106 + LRK53_RS18410 0.65 +0.0 58,107 - LRK53_RS18410 0.65 -2.9 58,119 + LRK53_RS18410 0.66 -0.1 58,119 + LRK53_RS18410 0.66 -0.6 58,119 + LRK53_RS18410 0.66 -0.6 58,119 + LRK53_RS18410 0.66 -0.6 58,120 - LRK53_RS18410 0.66 -0.5 58,120 - LRK53_RS18410 0.66 -1.9 58,120 - LRK53_RS18410 0.66 -0.2 58,188 + LRK53_RS18410 0.71 -1.3 58,188 + LRK53_RS18410 0.71 +0.1 58,338 + LRK53_RS18410 0.83 +0.3 58,339 - LRK53_RS18410 0.83 -0.3 58,426 + LRK53_RS18410 0.89 +0.7 58,426 + LRK53_RS18410 0.89 +2.4 58,427 - LRK53_RS18410 0.89 +0.7 58,446 + +0.3 58,503 + -0.7 58,503 + +0.5 58,551 + -0.4 58,551 + +1.0 58,607 + +2.0 58,608 - +0.4 58,608 - +0.0 58,839 + LRK53_RS18415 0.52 -0.8 58,839 + LRK53_RS18415 0.52 -0.7 58,839 + LRK53_RS18415 0.52 -0.6 58,839 + LRK53_RS18415 0.52 -0.2 58,839 + LRK53_RS18415 0.52 +0.8 58,839 + LRK53_RS18415 0.52 -0.9 58,839 + LRK53_RS18415 0.52 +0.8 58,839 + LRK53_RS18415 0.52 -0.6 58,839 + LRK53_RS18415 0.52 +0.2 58,839 + LRK53_RS18415 0.52 -1.3 58,839 + LRK53_RS18415 0.52 +0.9 58,839 + LRK53_RS18415 0.52 -2.2 58,840 - LRK53_RS18415 0.52 -1.3 58,840 - LRK53_RS18415 0.52 -0.3 58,840 - LRK53_RS18415 0.52 +2.5 58,840 - LRK53_RS18415 0.52 -0.7 58,840 - LRK53_RS18415 0.52 -0.2 58,840 - LRK53_RS18415 0.52 -0.3 58,840 - LRK53_RS18415 0.52 -0.6 59,093 + -0.2 59,093 + +1.7 59,094 - -2.1 59,195 + -0.7 59,195 + -0.6 59,195 + +0.4 59,196 - -1.0 59,196 - +0.0 59,196 - -2.0 59,196 - +0.7 59,196 - -0.3 59,224 + -0.1 59,224 + +1.0 59,224 + -0.6 59,224 + +0.0 59,224 + -1.8 59,288 + LRK53_RS18420 0.15 +0.3 59,499 - LRK53_RS18420 0.54 -1.8
Or see this region's nucleotide sequence