Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18390

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18380 and LRK53_RS18385 are separated by 2 nucleotidesLRK53_RS18385 and LRK53_RS18390 are separated by 84 nucleotidesLRK53_RS18390 and LRK53_RS18395 are separated by 135 nucleotidesLRK53_RS18395 and LRK53_RS18400 overlap by 56 nucleotides LRK53_RS18380: LRK53_RS18380 - toprim domain-containing protein, at 51,263 to 52,525 _RS18380 LRK53_RS18385: LRK53_RS18385 - hypothetical protein, at 52,528 to 52,815 _RS18385 LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448 _RS18390 LRK53_RS18395: LRK53_RS18395 - DUF6338 family protein, at 53,584 to 54,345 _RS18395 LRK53_RS18400: LRK53_RS18400 - hypothetical protein, at 54,290 to 54,532 _RS18400 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.902 kb on + strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.918 kb on - strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.299 kb on - strand, within LRK53_RS18380at 52.299 kb on - strand, within LRK53_RS18380at 52.459 kb on + strandat 52.459 kb on + strandat 52.459 kb on + strandat 52.459 kb on + strandat 52.460 kb on - strandat 52.460 kb on - strandat 52.523 kb on + strandat 52.523 kb on + strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.554 kb on + strandat 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.726 kb on + strand, within LRK53_RS18385at 52.814 kb on - strandat 52.840 kb on - strandat 52.853 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 53.131 kb on - strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390at 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.763 kb on - strand, within LRK53_RS18395at 53.859 kb on + strand, within LRK53_RS18395at 53.859 kb on + strand, within LRK53_RS18395at 53.860 kb on - strand, within LRK53_RS18395at 53.860 kb on - strand, within LRK53_RS18395at 53.917 kb on + strand, within LRK53_RS18395at 54.184 kb on + strand, within LRK53_RS18395at 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.442 kb on + strand, within LRK53_RS18400at 54.442 kb on + strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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51,902 + LRK53_RS18380 0.51 -1.2
51,903 - LRK53_RS18380 0.51 +1.0
51,918 - LRK53_RS18380 0.52 -0.6
51,992 + LRK53_RS18380 0.58 +1.0
51,992 + LRK53_RS18380 0.58 -1.7
51,992 + LRK53_RS18380 0.58 -1.4
51,992 + LRK53_RS18380 0.58 -0.6
51,992 + LRK53_RS18380 0.58 +0.0
51,992 + LRK53_RS18380 0.58 +0.5
51,992 + LRK53_RS18380 0.58 -1.2
51,993 - LRK53_RS18380 0.58 -0.5
51,993 - LRK53_RS18380 0.58 -1.2
51,993 - LRK53_RS18380 0.58 -1.1
51,993 - LRK53_RS18380 0.58 +0.6
51,993 - LRK53_RS18380 0.58 -0.7
51,993 - LRK53_RS18380 0.58 +1.4
51,993 - LRK53_RS18380 0.58 -1.0
51,993 - LRK53_RS18380 0.58 -1.6
51,993 - LRK53_RS18380 0.58 +1.0
52,102 + LRK53_RS18380 0.66 +1.4
52,102 + LRK53_RS18380 0.66 -0.6
52,103 - LRK53_RS18380 0.67 +0.0
52,103 - LRK53_RS18380 0.67 +0.1
52,103 - LRK53_RS18380 0.67 -0.2
52,103 - LRK53_RS18380 0.67 -0.6
52,299 - LRK53_RS18380 0.82 -0.6
52,299 - LRK53_RS18380 0.82 +0.3
52,459 + -0.2
52,459 + -1.0
52,459 + -1.9
52,459 + -0.6
52,460 - +0.0
52,460 - -0.5
52,523 + +0.6
52,523 + +1.0
52,524 - -1.1
52,524 - -1.0
52,524 - -1.5
52,554 + +1.2
52,584 + LRK53_RS18385 0.19 +1.2
52,584 + LRK53_RS18385 0.19 +1.4
52,584 + LRK53_RS18385 0.19 -1.7
52,584 + LRK53_RS18385 0.19 +0.0
52,584 + LRK53_RS18385 0.19 -1.6
52,584 + LRK53_RS18385 0.19 -1.1
52,584 + LRK53_RS18385 0.19 +1.0
52,585 - LRK53_RS18385 0.20 -0.0
52,585 - LRK53_RS18385 0.20 -2.7
52,585 - LRK53_RS18385 0.20 -0.7
52,585 - LRK53_RS18385 0.20 +0.0
52,585 - LRK53_RS18385 0.20 -2.0
52,585 - LRK53_RS18385 0.20 -0.8
52,585 - LRK53_RS18385 0.20 +0.0
52,627 + LRK53_RS18385 0.34 +0.3
52,627 + LRK53_RS18385 0.34 +0.4
52,627 + LRK53_RS18385 0.34 -1.2
52,627 + LRK53_RS18385 0.34 +2.3
52,726 + LRK53_RS18385 0.69 +1.0
52,814 - -0.0
52,840 - -0.9
52,853 + +0.1
52,895 + -0.2
52,895 + -2.6
52,895 + -0.4
52,896 - -2.6
52,896 - +2.2
52,896 - +1.0
52,896 - -0.3
52,896 - -0.4
52,896 - -0.6
53,131 - LRK53_RS18390 0.42 +0.0
53,320 + LRK53_RS18390 0.77 -0.8
53,320 + LRK53_RS18390 0.77 -1.4
53,321 - LRK53_RS18390 0.77 -1.8
53,321 - LRK53_RS18390 0.77 -0.7
53,644 + -0.4
53,644 + +1.0
53,644 + -0.1
53,644 + -0.8
53,763 - LRK53_RS18395 0.23 +0.6
53,859 + LRK53_RS18395 0.36 +1.6
53,859 + LRK53_RS18395 0.36 -1.1
53,860 - LRK53_RS18395 0.36 -0.6
53,860 - LRK53_RS18395 0.36 +0.2
53,917 + LRK53_RS18395 0.44 +0.7
54,184 + LRK53_RS18395 0.79 -1.3
54,284 + +1.0
54,284 + +0.2
54,284 + +1.2
54,285 - -1.0
54,285 - +0.1
54,285 - +0.6
54,285 - -0.1
54,442 + LRK53_RS18400 0.63 -1.3
54,442 + LRK53_RS18400 0.63 -0.2
54,443 - LRK53_RS18400 0.63 -0.1
54,443 - LRK53_RS18400 0.63 +0.0
54,443 - LRK53_RS18400 0.63 -0.3

Or see this region's nucleotide sequence