Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18315

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18310 and LRK53_RS18315 are separated by 257 nucleotidesLRK53_RS18315 and LRK53_RS18320 are separated by 148 nucleotidesLRK53_RS18320 and LRK53_RS18325 are separated by 65 nucleotidesLRK53_RS18325 and LRK53_RS18330 overlap by 24 nucleotides LRK53_RS18310: LRK53_RS18310 - DUF790 family protein, at 38,163 to 39,506 _RS18310 LRK53_RS18315: LRK53_RS18315 - hypothetical protein, at 39,764 to 40,282 _RS18315 LRK53_RS18320: LRK53_RS18320 - hypothetical protein, at 40,431 to 40,652 _RS18320 LRK53_RS18325: LRK53_RS18325 - hypothetical protein, at 40,718 to 40,999 _RS18325 LRK53_RS18330: LRK53_RS18330 - hypothetical protein, at 40,976 to 41,212 _RS18330 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.808 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.017 kb on + strand, within LRK53_RS18310at 39.018 kb on - strand, within LRK53_RS18310at 39.018 kb on - strand, within LRK53_RS18310at 39.018 kb on - strand, within LRK53_RS18310at 39.018 kb on - strand, within LRK53_RS18310at 39.018 kb on - strand, within LRK53_RS18310at 39.102 kb on + strand, within LRK53_RS18310at 39.103 kb on - strand, within LRK53_RS18310at 39.103 kb on - strand, within LRK53_RS18310at 39.103 kb on - strand, within LRK53_RS18310at 39.195 kb on + strand, within LRK53_RS18310at 39.195 kb on + strand, within LRK53_RS18310at 39.196 kb on - strand, within LRK53_RS18310at 39.196 kb on - strand, within LRK53_RS18310at 39.196 kb on - strand, within LRK53_RS18310at 39.271 kb on + strand, within LRK53_RS18310at 39.271 kb on + strand, within LRK53_RS18310at 39.271 kb on + strand, within LRK53_RS18310at 39.271 kb on + strand, within LRK53_RS18310at 39.272 kb on - strand, within LRK53_RS18310at 39.272 kb on - strand, within LRK53_RS18310at 39.369 kb on + strand, within LRK53_RS18310at 39.369 kb on + strand, within LRK53_RS18310at 39.369 kb on + strand, within LRK53_RS18310at 39.370 kb on - strand, within LRK53_RS18310at 39.370 kb on - strand, within LRK53_RS18310at 39.433 kb on + strandat 39.434 kb on - strandat 39.504 kb on + strandat 39.504 kb on + strandat 39.505 kb on - strandat 39.505 kb on - strandat 39.505 kb on - strandat 39.505 kb on - strandat 39.541 kb on + strandat 39.542 kb on - strandat 39.622 kb on + strandat 39.623 kb on - strandat 39.623 kb on - strandat 39.623 kb on - strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.796 kb on + strandat 39.797 kb on - strandat 39.797 kb on - strandat 39.902 kb on + strand, within LRK53_RS18315at 40.019 kb on + strand, within LRK53_RS18315at 40.019 kb on + strand, within LRK53_RS18315at 40.019 kb on + strand, within LRK53_RS18315at 40.019 kb on + strand, within LRK53_RS18315at 40.019 kb on + strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.020 kb on - strand, within LRK53_RS18315at 40.039 kb on + strand, within LRK53_RS18315at 40.039 kb on + strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.040 kb on - strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.043 kb on + strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.044 kb on - strand, within LRK53_RS18315at 40.064 kb on + strand, within LRK53_RS18315at 40.065 kb on - strand, within LRK53_RS18315at 40.065 kb on - strand, within LRK53_RS18315at 40.065 kb on - strand, within LRK53_RS18315at 40.163 kb on + strand, within LRK53_RS18315at 40.288 kb on - strandat 40.288 kb on - strandat 40.288 kb on - strandat 40.426 kb on + strandat 40.426 kb on + strandat 40.427 kb on - strandat 40.427 kb on - strandat 40.561 kb on - strand, within LRK53_RS18320at 40.717 kb on + strandat 40.717 kb on + strandat 40.717 kb on + strandat 40.717 kb on + strandat 40.717 kb on + strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.718 kb on - strandat 40.944 kb on - strand, within LRK53_RS18325at 40.966 kb on - strand, within LRK53_RS18325at 40.977 kb on + strandat 41.243 kb on + strandat 41.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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38,808 + LRK53_RS18310 0.48 +0.2
39,017 + LRK53_RS18310 0.64 -1.5
39,017 + LRK53_RS18310 0.64 -0.2
39,017 + LRK53_RS18310 0.64 +1.0
39,017 + LRK53_RS18310 0.64 +0.5
39,017 + LRK53_RS18310 0.64 -0.8
39,017 + LRK53_RS18310 0.64 -1.8
39,018 - LRK53_RS18310 0.64 -1.3
39,018 - LRK53_RS18310 0.64 -0.2
39,018 - LRK53_RS18310 0.64 -0.1
39,018 - LRK53_RS18310 0.64 +1.0
39,018 - LRK53_RS18310 0.64 -1.2
39,102 + LRK53_RS18310 0.70 +1.6
39,103 - LRK53_RS18310 0.70 +0.2
39,103 - LRK53_RS18310 0.70 -0.3
39,103 - LRK53_RS18310 0.70 +0.6
39,195 + LRK53_RS18310 0.77 -0.6
39,195 + LRK53_RS18310 0.77 -0.5
39,196 - LRK53_RS18310 0.77 +0.4
39,196 - LRK53_RS18310 0.77 +1.2
39,196 - LRK53_RS18310 0.77 +0.8
39,271 + LRK53_RS18310 0.82 +1.0
39,271 + LRK53_RS18310 0.82 +0.3
39,271 + LRK53_RS18310 0.82 -1.3
39,271 + LRK53_RS18310 0.82 -0.7
39,272 - LRK53_RS18310 0.83 +2.0
39,272 - LRK53_RS18310 0.83 +2.2
39,369 + LRK53_RS18310 0.90 -0.6
39,369 + LRK53_RS18310 0.90 -0.3
39,369 + LRK53_RS18310 0.90 +0.1
39,370 - LRK53_RS18310 0.90 +1.6
39,370 - LRK53_RS18310 0.90 -0.3
39,433 + -0.3
39,434 - -1.3
39,504 + -0.1
39,504 + -2.0
39,505 - -0.7
39,505 - +0.6
39,505 - -0.8
39,505 - +1.2
39,541 + -0.3
39,542 - -0.4
39,622 + -0.6
39,623 - +0.8
39,623 - +0.8
39,623 - -1.0
39,796 + -1.5
39,796 + -0.6
39,796 + -0.4
39,796 + -1.8
39,796 + -1.1
39,796 + -0.9
39,796 + +1.0
39,797 - -0.3
39,797 - +0.2
39,902 + LRK53_RS18315 0.27 -1.6
40,019 + LRK53_RS18315 0.49 +1.2
40,019 + LRK53_RS18315 0.49 -2.5
40,019 + LRK53_RS18315 0.49 +0.0
40,019 + LRK53_RS18315 0.49 -0.6
40,019 + LRK53_RS18315 0.49 -1.6
40,020 - LRK53_RS18315 0.49 -2.3
40,020 - LRK53_RS18315 0.49 +1.5
40,020 - LRK53_RS18315 0.49 +1.0
40,020 - LRK53_RS18315 0.49 -0.6
40,020 - LRK53_RS18315 0.49 +0.0
40,020 - LRK53_RS18315 0.49 +1.0
40,020 - LRK53_RS18315 0.49 -0.6
40,039 + LRK53_RS18315 0.53 +0.0
40,039 + LRK53_RS18315 0.53 -2.2
40,040 - LRK53_RS18315 0.53 +0.4
40,040 - LRK53_RS18315 0.53 -0.3
40,040 - LRK53_RS18315 0.53 +0.0
40,040 - LRK53_RS18315 0.53 -1.0
40,040 - LRK53_RS18315 0.53 -0.9
40,040 - LRK53_RS18315 0.53 -0.4
40,043 + LRK53_RS18315 0.54 -0.6
40,043 + LRK53_RS18315 0.54 -1.2
40,043 + LRK53_RS18315 0.54 +0.6
40,043 + LRK53_RS18315 0.54 -2.7
40,043 + LRK53_RS18315 0.54 -0.3
40,043 + LRK53_RS18315 0.54 +0.1
40,043 + LRK53_RS18315 0.54 +1.0
40,043 + LRK53_RS18315 0.54 -0.4
40,043 + LRK53_RS18315 0.54 +0.4
40,043 + LRK53_RS18315 0.54 +0.1
40,044 - LRK53_RS18315 0.54 +0.3
40,044 - LRK53_RS18315 0.54 +2.0
40,044 - LRK53_RS18315 0.54 +0.0
40,044 - LRK53_RS18315 0.54 -0.8
40,044 - LRK53_RS18315 0.54 -1.0
40,044 - LRK53_RS18315 0.54 +0.8
40,044 - LRK53_RS18315 0.54 -0.3
40,044 - LRK53_RS18315 0.54 +1.2
40,064 + LRK53_RS18315 0.58 +2.0
40,065 - LRK53_RS18315 0.58 -1.6
40,065 - LRK53_RS18315 0.58 +0.1
40,065 - LRK53_RS18315 0.58 -2.2
40,163 + LRK53_RS18315 0.77 -0.4
40,288 - -0.4
40,288 - +1.6
40,288 - -0.2
40,426 + -0.6
40,426 + -0.6
40,427 - -0.7
40,427 - -0.1
40,561 - LRK53_RS18320 0.59 +1.0
40,717 + -0.7
40,717 + +1.3
40,717 + -0.2
40,717 + +1.0
40,717 + -0.6
40,718 - -0.7
40,718 - -1.3
40,718 - -0.8
40,718 - -0.2
40,718 - -1.3
40,718 - -0.8
40,718 - -0.2
40,944 - LRK53_RS18325 0.80 -1.3
40,966 - LRK53_RS18325 0.88 +0.0
40,977 + -1.6
41,243 + +1.0
41,273 + +0.0

Or see this region's nucleotide sequence