Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18120 and LRK53_RS18125 are separated by 73 nucleotides LRK53_RS18125 and LRK53_RS18130 are separated by 101 nucleotides LRK53_RS18130 and LRK53_RS18135 are separated by 10 nucleotides
LRK53_RS18120: LRK53_RS18120 - energy transducer TonB, at 1 to 642
_RS18120
LRK53_RS18125: LRK53_RS18125 - hypothetical protein, at 716 to 1,069
_RS18125
LRK53_RS18130: LRK53_RS18130 - lytic transglycosylase domain-containing protein, at 1,171 to 1,815
_RS18130
LRK53_RS18135: LRK53_RS18135 - hypothetical protein, at 1,826 to 2,545
_RS18135
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.015 kb on + strand at 0.015 kb on + strand at 0.064 kb on + strand at 0.064 kb on + strand at 0.064 kb on + strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.065 kb on - strand at 0.216 kb on + strand, within LRK53_RS18120 at 0.216 kb on + strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.217 kb on - strand, within LRK53_RS18120 at 0.353 kb on - strand, within LRK53_RS18120 at 0.582 kb on - strand at 0.762 kb on - strand, within LRK53_RS18125 at 0.894 kb on - strand, within LRK53_RS18125 at 1.127 kb on - strand at 1.153 kb on - strand at 1.153 kb on - strand at 1.153 kb on - strand at 1.183 kb on - strand at 1.183 kb on - strand at 1.183 kb on - strand at 1.276 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.484 kb on - strand, within LRK53_RS18130 at 1.549 kb on + strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.550 kb on - strand, within LRK53_RS18130 at 1.754 kb on - strand at 1.754 kb on - strand at 1.845 kb on + strand at 1.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 15 + +0.4 15 + +1.2 64 + -0.3 64 + +0.0 64 + +0.0 65 - +1.8 65 - -1.1 65 - -0.6 65 - +0.4 65 - +0.1 65 - -2.4 65 - +1.0 216 + LRK53_RS18120 0.33 -1.8 216 + LRK53_RS18120 0.33 -1.0 217 - LRK53_RS18120 0.34 -1.0 217 - LRK53_RS18120 0.34 -0.2 217 - LRK53_RS18120 0.34 +1.0 217 - LRK53_RS18120 0.34 +0.8 353 - LRK53_RS18120 0.55 -1.7 582 - -0.0 762 - LRK53_RS18125 0.13 -2.7 894 - LRK53_RS18125 0.50 -0.3 1,127 - +0.8 1,153 - -0.9 1,153 - +2.6 1,153 - +1.1 1,183 - +0.1 1,183 - -2.1 1,183 - -2.4 1,276 - LRK53_RS18130 0.16 -0.1 1,484 - LRK53_RS18130 0.49 +0.2 1,484 - LRK53_RS18130 0.49 -0.6 1,484 - LRK53_RS18130 0.49 -0.8 1,549 + LRK53_RS18130 0.59 -0.7 1,550 - LRK53_RS18130 0.59 +2.0 1,550 - LRK53_RS18130 0.59 -0.6 1,550 - LRK53_RS18130 0.59 -1.3 1,550 - LRK53_RS18130 0.59 +1.0 1,754 - -1.4 1,754 - -2.4 1,845 + -1.0 1,846 - -1.6
Or see this region's nucleotide sequence