Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17980 and LRK53_RS17985 are separated by 36 nucleotides LRK53_RS17985 and LRK53_RS17990 are separated by 668 nucleotides LRK53_RS17990 and LRK53_RS17995 are separated by 52 nucleotides
LRK53_RS17980: LRK53_RS17980 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein, at 3,948,761 to 3,950,635
_RS17980
LRK53_RS17985: LRK53_RS17985 - hypothetical protein, at 3,950,672 to 3,950,890
_RS17985
LRK53_RS17990: LRK53_RS17990 - energy transducer TonB, at 3,951,559 to 3,952,110
_RS17990
LRK53_RS17995: LRK53_RS17995 - acetyl-CoA C-acetyltransferase, at 3,952,163 to 3,953,446
_RS17995
Position (kb)
3951
3952
3953 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3950.648 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.484 kb on + strand at 3951.485 kb on - strand at 3951.485 kb on - strand at 3951.561 kb on - strand at 3951.561 kb on - strand at 3951.995 kb on + strand, within LRK53_RS17990 at 3951.995 kb on + strand, within LRK53_RS17990 at 3951.995 kb on + strand, within LRK53_RS17990 at 3951.995 kb on + strand, within LRK53_RS17990 at 3951.996 kb on - strand, within LRK53_RS17990 at 3951.996 kb on - strand, within LRK53_RS17990 at 3951.996 kb on - strand, within LRK53_RS17990 at 3951.996 kb on - strand, within LRK53_RS17990 at 3951.996 kb on - strand, within LRK53_RS17990 at 3952.386 kb on + strand, within LRK53_RS17995 at 3952.386 kb on + strand, within LRK53_RS17995 at 3952.387 kb on - strand, within LRK53_RS17995 at 3952.387 kb on - strand, within LRK53_RS17995 at 3952.387 kb on - strand, within LRK53_RS17995 at 3952.387 kb on - strand, within LRK53_RS17995 at 3952.452 kb on + strand, within LRK53_RS17995 at 3952.453 kb on - strand, within LRK53_RS17995 at 3952.453 kb on - strand, within LRK53_RS17995 at 3952.453 kb on - strand, within LRK53_RS17995 at 3952.455 kb on + strand, within LRK53_RS17995 at 3952.455 kb on + strand, within LRK53_RS17995 at 3952.455 kb on + strand, within LRK53_RS17995 at 3952.455 kb on + strand, within LRK53_RS17995 at 3952.455 kb on + strand, within LRK53_RS17995 at 3952.456 kb on - strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.578 kb on + strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.579 kb on - strand, within LRK53_RS17995 at 3952.815 kb on + strand, within LRK53_RS17995 at 3952.815 kb on + strand, within LRK53_RS17995 at 3953.062 kb on - strand, within LRK53_RS17995 at 3953.072 kb on + strand, within LRK53_RS17995 at 3953.072 kb on + strand, within LRK53_RS17995 at 3953.072 kb on + strand, within LRK53_RS17995 at 3953.073 kb on - strand, within LRK53_RS17995
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 3,950,648 - +1.8 3,951,053 - -0.5 3,951,053 - +1.1 3,951,053 - -2.3 3,951,053 - -0.4 3,951,053 - +0.8 3,951,053 - +0.7 3,951,053 - +1.1 3,951,053 - -1.7 3,951,053 - +3.1 3,951,277 + +0.4 3,951,277 + +0.1 3,951,277 + +0.9 3,951,277 + -1.0 3,951,277 + -0.5 3,951,277 + -0.7 3,951,277 + -0.5 3,951,277 + +0.8 3,951,278 - -0.5 3,951,278 - -0.5 3,951,278 - -0.9 3,951,278 - +0.6 3,951,484 + +0.4 3,951,485 - +1.2 3,951,485 - -0.1 3,951,561 - +0.1 3,951,561 - +0.1 3,951,995 + LRK53_RS17990 0.79 +1.1 3,951,995 + LRK53_RS17990 0.79 -1.7 3,951,995 + LRK53_RS17990 0.79 -0.5 3,951,995 + LRK53_RS17990 0.79 +0.1 3,951,996 - LRK53_RS17990 0.79 -0.8 3,951,996 - LRK53_RS17990 0.79 -0.8 3,951,996 - LRK53_RS17990 0.79 -0.9 3,951,996 - LRK53_RS17990 0.79 -1.5 3,951,996 - LRK53_RS17990 0.79 -0.3 3,952,386 + LRK53_RS17995 0.17 -1.7 3,952,386 + LRK53_RS17995 0.17 +2.1 3,952,387 - LRK53_RS17995 0.17 +0.1 3,952,387 - LRK53_RS17995 0.17 -1.5 3,952,387 - LRK53_RS17995 0.17 -0.7 3,952,387 - LRK53_RS17995 0.17 +0.3 3,952,452 + LRK53_RS17995 0.23 +0.4 3,952,453 - LRK53_RS17995 0.23 -1.5 3,952,453 - LRK53_RS17995 0.23 -2.3 3,952,453 - LRK53_RS17995 0.23 -2.7 3,952,455 + LRK53_RS17995 0.23 -0.9 3,952,455 + LRK53_RS17995 0.23 -2.5 3,952,455 + LRK53_RS17995 0.23 -2.1 3,952,455 + LRK53_RS17995 0.23 -1.5 3,952,455 + LRK53_RS17995 0.23 -1.4 3,952,456 - LRK53_RS17995 0.23 +0.5 3,952,578 + LRK53_RS17995 0.32 -2.7 3,952,578 + LRK53_RS17995 0.32 -0.5 3,952,578 + LRK53_RS17995 0.32 -2.9 3,952,578 + LRK53_RS17995 0.32 +2.9 3,952,578 + LRK53_RS17995 0.32 +0.5 3,952,578 + LRK53_RS17995 0.32 -3.2 3,952,579 - LRK53_RS17995 0.32 +0.2 3,952,579 - LRK53_RS17995 0.32 -1.9 3,952,579 - LRK53_RS17995 0.32 -0.5 3,952,579 - LRK53_RS17995 0.32 -0.5 3,952,579 - LRK53_RS17995 0.32 -2.8 3,952,579 - LRK53_RS17995 0.32 -1.2 3,952,815 + LRK53_RS17995 0.51 +1.1 3,952,815 + LRK53_RS17995 0.51 -2.3 3,953,062 - LRK53_RS17995 0.70 -1.5 3,953,072 + LRK53_RS17995 0.71 +0.1 3,953,072 + LRK53_RS17995 0.71 -0.3 3,953,072 + LRK53_RS17995 0.71 +0.1 3,953,073 - LRK53_RS17995 0.71 -0.5
Or see this region's nucleotide sequence