Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17990

Experiment: NLDM_defined low iron; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS17980 and LRK53_RS17985 are separated by 36 nucleotidesLRK53_RS17985 and LRK53_RS17990 are separated by 668 nucleotidesLRK53_RS17990 and LRK53_RS17995 are separated by 52 nucleotides LRK53_RS17980: LRK53_RS17980 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein, at 3,948,761 to 3,950,635 _RS17980 LRK53_RS17985: LRK53_RS17985 - hypothetical protein, at 3,950,672 to 3,950,890 _RS17985 LRK53_RS17990: LRK53_RS17990 - energy transducer TonB, at 3,951,559 to 3,952,110 _RS17990 LRK53_RS17995: LRK53_RS17995 - acetyl-CoA C-acetyltransferase, at 3,952,163 to 3,953,446 _RS17995 Position (kb) 3951 3952 3953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3950.648 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.484 kb on + strandat 3951.485 kb on - strandat 3951.485 kb on - strandat 3951.561 kb on - strandat 3951.561 kb on - strandat 3951.995 kb on + strand, within LRK53_RS17990at 3951.995 kb on + strand, within LRK53_RS17990at 3951.995 kb on + strand, within LRK53_RS17990at 3951.995 kb on + strand, within LRK53_RS17990at 3951.996 kb on - strand, within LRK53_RS17990at 3951.996 kb on - strand, within LRK53_RS17990at 3951.996 kb on - strand, within LRK53_RS17990at 3951.996 kb on - strand, within LRK53_RS17990at 3951.996 kb on - strand, within LRK53_RS17990at 3952.386 kb on + strand, within LRK53_RS17995at 3952.386 kb on + strand, within LRK53_RS17995at 3952.387 kb on - strand, within LRK53_RS17995at 3952.387 kb on - strand, within LRK53_RS17995at 3952.387 kb on - strand, within LRK53_RS17995at 3952.387 kb on - strand, within LRK53_RS17995at 3952.452 kb on + strand, within LRK53_RS17995at 3952.453 kb on - strand, within LRK53_RS17995at 3952.453 kb on - strand, within LRK53_RS17995at 3952.453 kb on - strand, within LRK53_RS17995at 3952.455 kb on + strand, within LRK53_RS17995at 3952.455 kb on + strand, within LRK53_RS17995at 3952.455 kb on + strand, within LRK53_RS17995at 3952.455 kb on + strand, within LRK53_RS17995at 3952.455 kb on + strand, within LRK53_RS17995at 3952.456 kb on - strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.578 kb on + strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.579 kb on - strand, within LRK53_RS17995at 3952.815 kb on + strand, within LRK53_RS17995at 3952.815 kb on + strand, within LRK53_RS17995at 3953.062 kb on - strand, within LRK53_RS17995at 3953.072 kb on + strand, within LRK53_RS17995at 3953.072 kb on + strand, within LRK53_RS17995at 3953.072 kb on + strand, within LRK53_RS17995at 3953.073 kb on - strand, within LRK53_RS17995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
remove
3,950,648 - +1.8
3,951,053 - -0.5
3,951,053 - +1.1
3,951,053 - -2.3
3,951,053 - -0.4
3,951,053 - +0.8
3,951,053 - +0.7
3,951,053 - +1.1
3,951,053 - -1.7
3,951,053 - +3.1
3,951,277 + +0.4
3,951,277 + +0.1
3,951,277 + +0.9
3,951,277 + -1.0
3,951,277 + -0.5
3,951,277 + -0.7
3,951,277 + -0.5
3,951,277 + +0.8
3,951,278 - -0.5
3,951,278 - -0.5
3,951,278 - -0.9
3,951,278 - +0.6
3,951,484 + +0.4
3,951,485 - +1.2
3,951,485 - -0.1
3,951,561 - +0.1
3,951,561 - +0.1
3,951,995 + LRK53_RS17990 0.79 +1.1
3,951,995 + LRK53_RS17990 0.79 -1.7
3,951,995 + LRK53_RS17990 0.79 -0.5
3,951,995 + LRK53_RS17990 0.79 +0.1
3,951,996 - LRK53_RS17990 0.79 -0.8
3,951,996 - LRK53_RS17990 0.79 -0.8
3,951,996 - LRK53_RS17990 0.79 -0.9
3,951,996 - LRK53_RS17990 0.79 -1.5
3,951,996 - LRK53_RS17990 0.79 -0.3
3,952,386 + LRK53_RS17995 0.17 -1.7
3,952,386 + LRK53_RS17995 0.17 +2.1
3,952,387 - LRK53_RS17995 0.17 +0.1
3,952,387 - LRK53_RS17995 0.17 -1.5
3,952,387 - LRK53_RS17995 0.17 -0.7
3,952,387 - LRK53_RS17995 0.17 +0.3
3,952,452 + LRK53_RS17995 0.23 +0.4
3,952,453 - LRK53_RS17995 0.23 -1.5
3,952,453 - LRK53_RS17995 0.23 -2.3
3,952,453 - LRK53_RS17995 0.23 -2.7
3,952,455 + LRK53_RS17995 0.23 -0.9
3,952,455 + LRK53_RS17995 0.23 -2.5
3,952,455 + LRK53_RS17995 0.23 -2.1
3,952,455 + LRK53_RS17995 0.23 -1.5
3,952,455 + LRK53_RS17995 0.23 -1.4
3,952,456 - LRK53_RS17995 0.23 +0.5
3,952,578 + LRK53_RS17995 0.32 -2.7
3,952,578 + LRK53_RS17995 0.32 -0.5
3,952,578 + LRK53_RS17995 0.32 -2.9
3,952,578 + LRK53_RS17995 0.32 +2.9
3,952,578 + LRK53_RS17995 0.32 +0.5
3,952,578 + LRK53_RS17995 0.32 -3.2
3,952,579 - LRK53_RS17995 0.32 +0.2
3,952,579 - LRK53_RS17995 0.32 -1.9
3,952,579 - LRK53_RS17995 0.32 -0.5
3,952,579 - LRK53_RS17995 0.32 -0.5
3,952,579 - LRK53_RS17995 0.32 -2.8
3,952,579 - LRK53_RS17995 0.32 -1.2
3,952,815 + LRK53_RS17995 0.51 +1.1
3,952,815 + LRK53_RS17995 0.51 -2.3
3,953,062 - LRK53_RS17995 0.70 -1.5
3,953,072 + LRK53_RS17995 0.71 +0.1
3,953,072 + LRK53_RS17995 0.71 -0.3
3,953,072 + LRK53_RS17995 0.71 +0.1
3,953,073 - LRK53_RS17995 0.71 -0.5

Or see this region's nucleotide sequence