Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14055

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14045 and LRK53_RS14050 are separated by 25 nucleotidesLRK53_RS14050 and LRK53_RS14055 are separated by 9 nucleotidesLRK53_RS14055 and LRK53_RS14060 are separated by 50 nucleotidesLRK53_RS14060 and LRK53_RS14065 are separated by 79 nucleotides LRK53_RS14045: LRK53_RS14045 - hypothetical protein, at 3,090,208 to 3,090,402 _RS14045 LRK53_RS14050: LRK53_RS14050 - CPBP family glutamic-type intramembrane protease, at 3,090,428 to 3,091,201 _RS14050 LRK53_RS14055: LRK53_RS14055 - hypothetical protein, at 3,091,211 to 3,091,621 _RS14055 LRK53_RS14060: LRK53_RS14060 - DUF423 domain-containing protein, at 3,091,672 to 3,092,049 _RS14060 LRK53_RS14065: LRK53_RS14065 - SCO family protein, at 3,092,129 to 3,092,746 _RS14065 Position (kb) 3091 3092Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3090.254 kb on + strand, within LRK53_RS14045at 3090.254 kb on + strand, within LRK53_RS14045at 3090.254 kb on + strand, within LRK53_RS14045at 3090.316 kb on + strand, within LRK53_RS14045at 3090.316 kb on + strand, within LRK53_RS14045at 3090.316 kb on + strand, within LRK53_RS14045at 3090.316 kb on + strand, within LRK53_RS14045at 3090.316 kb on + strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.317 kb on - strand, within LRK53_RS14045at 3090.657 kb on - strand, within LRK53_RS14050at 3090.692 kb on + strand, within LRK53_RS14050at 3090.860 kb on + strand, within LRK53_RS14050at 3090.861 kb on - strand, within LRK53_RS14050at 3090.882 kb on + strand, within LRK53_RS14050at 3090.882 kb on + strand, within LRK53_RS14050at 3090.882 kb on + strand, within LRK53_RS14050at 3090.883 kb on - strand, within LRK53_RS14050at 3090.883 kb on - strand, within LRK53_RS14050at 3090.883 kb on - strand, within LRK53_RS14050at 3090.883 kb on - strand, within LRK53_RS14050at 3090.883 kb on - strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.118 kb on + strand, within LRK53_RS14050at 3091.119 kb on - strand, within LRK53_RS14050at 3091.119 kb on - strand, within LRK53_RS14050at 3091.380 kb on + strand, within LRK53_RS14055at 3091.380 kb on + strand, within LRK53_RS14055at 3091.380 kb on + strand, within LRK53_RS14055at 3091.380 kb on + strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.381 kb on - strand, within LRK53_RS14055at 3091.673 kb on + strandat 3091.673 kb on + strandat 3091.673 kb on + strandat 3091.673 kb on + strandat 3091.673 kb on + strandat 3091.673 kb on + strandat 3091.674 kb on - strandat 3091.674 kb on - strandat 3091.674 kb on - strandat 3091.674 kb on - strandat 3091.674 kb on - strandat 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.904 kb on + strand, within LRK53_RS14060at 3091.905 kb on - strand, within LRK53_RS14060at 3091.905 kb on - strand, within LRK53_RS14060at 3091.905 kb on - strand, within LRK53_RS14060at 3091.905 kb on - strand, within LRK53_RS14060at 3091.935 kb on + strand, within LRK53_RS14060at 3091.936 kb on - strand, within LRK53_RS14060at 3091.936 kb on - strand, within LRK53_RS14060at 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.095 kb on + strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.096 kb on - strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.105 kb on + strandat 3092.106 kb on - strandat 3092.106 kb on - strandat 3092.106 kb on - strandat 3092.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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3,090,254 + LRK53_RS14045 0.24 -0.0
3,090,254 + LRK53_RS14045 0.24 -0.4
3,090,254 + LRK53_RS14045 0.24 -1.5
3,090,316 + LRK53_RS14045 0.55 +0.6
3,090,316 + LRK53_RS14045 0.55 +0.2
3,090,316 + LRK53_RS14045 0.55 -1.2
3,090,316 + LRK53_RS14045 0.55 -0.6
3,090,316 + LRK53_RS14045 0.55 -0.5
3,090,317 - LRK53_RS14045 0.56 -0.7
3,090,317 - LRK53_RS14045 0.56 -0.7
3,090,317 - LRK53_RS14045 0.56 -0.5
3,090,317 - LRK53_RS14045 0.56 +0.3
3,090,317 - LRK53_RS14045 0.56 -0.6
3,090,317 - LRK53_RS14045 0.56 +0.5
3,090,317 - LRK53_RS14045 0.56 -0.1
3,090,657 - LRK53_RS14050 0.30 +1.1
3,090,692 + LRK53_RS14050 0.34 -2.0
3,090,860 + LRK53_RS14050 0.56 +0.6
3,090,861 - LRK53_RS14050 0.56 -0.5
3,090,882 + LRK53_RS14050 0.59 +0.6
3,090,882 + LRK53_RS14050 0.59 -0.6
3,090,882 + LRK53_RS14050 0.59 +0.1
3,090,883 - LRK53_RS14050 0.59 +1.5
3,090,883 - LRK53_RS14050 0.59 -1.6
3,090,883 - LRK53_RS14050 0.59 +0.8
3,090,883 - LRK53_RS14050 0.59 +1.0
3,090,883 - LRK53_RS14050 0.59 -2.7
3,091,118 + LRK53_RS14050 0.89 +0.8
3,091,118 + LRK53_RS14050 0.89 -0.0
3,091,118 + LRK53_RS14050 0.89 +3.0
3,091,118 + LRK53_RS14050 0.89 -0.9
3,091,118 + LRK53_RS14050 0.89 +1.0
3,091,118 + LRK53_RS14050 0.89 -0.4
3,091,118 + LRK53_RS14050 0.89 +2.3
3,091,119 - LRK53_RS14050 0.89 -0.6
3,091,119 - LRK53_RS14050 0.89 -0.0
3,091,380 + LRK53_RS14055 0.41 -2.6
3,091,380 + LRK53_RS14055 0.41 -1.9
3,091,380 + LRK53_RS14055 0.41 +1.0
3,091,380 + LRK53_RS14055 0.41 -1.1
3,091,381 - LRK53_RS14055 0.41 -0.2
3,091,381 - LRK53_RS14055 0.41 -1.0
3,091,381 - LRK53_RS14055 0.41 -1.2
3,091,381 - LRK53_RS14055 0.41 -0.6
3,091,381 - LRK53_RS14055 0.41 +0.1
3,091,381 - LRK53_RS14055 0.41 -1.1
3,091,673 + -0.0
3,091,673 + -0.4
3,091,673 + +0.2
3,091,673 + -1.2
3,091,673 + -1.8
3,091,673 + -0.9
3,091,674 - -1.4
3,091,674 - +0.1
3,091,674 - -0.0
3,091,674 - -0.1
3,091,674 - -0.6
3,091,904 + LRK53_RS14060 0.61 +1.0
3,091,904 + LRK53_RS14060 0.61 -0.3
3,091,904 + LRK53_RS14060 0.61 -1.3
3,091,904 + LRK53_RS14060 0.61 +1.0
3,091,904 + LRK53_RS14060 0.61 +0.1
3,091,904 + LRK53_RS14060 0.61 -0.3
3,091,904 + LRK53_RS14060 0.61 -1.4
3,091,904 + LRK53_RS14060 0.61 -1.0
3,091,905 - LRK53_RS14060 0.62 +0.1
3,091,905 - LRK53_RS14060 0.62 +0.4
3,091,905 - LRK53_RS14060 0.62 -1.4
3,091,905 - LRK53_RS14060 0.62 +0.4
3,091,935 + LRK53_RS14060 0.70 +1.0
3,091,936 - LRK53_RS14060 0.70 -0.6
3,091,936 - LRK53_RS14060 0.70 -1.8
3,092,095 + -0.7
3,092,095 + +0.7
3,092,095 + -0.8
3,092,095 + +1.3
3,092,095 + -0.5
3,092,095 + -0.2
3,092,095 + +2.5
3,092,095 + +3.0
3,092,095 + -1.9
3,092,096 - -1.3
3,092,096 - +1.3
3,092,096 - -0.2
3,092,096 - -0.6
3,092,096 - -0.1
3,092,096 - -0.7
3,092,096 - -1.8
3,092,096 - -1.5
3,092,105 + -1.4
3,092,105 + -0.7
3,092,105 + +0.7
3,092,105 + +0.5
3,092,105 + -0.9
3,092,105 + -1.7
3,092,105 + -0.8
3,092,105 + -0.5
3,092,105 + +0.8
3,092,105 + +2.8
3,092,105 + -0.0
3,092,105 + -0.0
3,092,106 - -1.6
3,092,106 - -0.4
3,092,106 - -0.6
3,092,106 - -0.1

Or see this region's nucleotide sequence