Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13145

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13140 and LRK53_RS13145 are separated by 423 nucleotidesLRK53_RS13145 and LRK53_RS13150 are separated by 313 nucleotides LRK53_RS13140: LRK53_RS13140 - D-serine/D-alanine/glycine transporter, at 2,896,589 to 2,897,986 _RS13140 LRK53_RS13145: LRK53_RS13145 - hypothetical protein, at 2,898,410 to 2,898,976 _RS13145 LRK53_RS13150: LRK53_RS13150 - GGDEF domain-containing protein, at 2,899,290 to 2,900,444 _RS13150 Position (kb) 2898 2899Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2897.637 kb on + strand, within LRK53_RS13140at 2897.637 kb on + strand, within LRK53_RS13140at 2897.638 kb on - strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.691 kb on + strand, within LRK53_RS13140at 2897.692 kb on - strand, within LRK53_RS13140at 2897.692 kb on - strand, within LRK53_RS13140at 2897.692 kb on - strand, within LRK53_RS13140at 2897.692 kb on - strand, within LRK53_RS13140at 2897.692 kb on - strand, within LRK53_RS13140at 2897.760 kb on + strand, within LRK53_RS13140at 2897.760 kb on + strand, within LRK53_RS13140at 2897.760 kb on + strand, within LRK53_RS13140at 2897.760 kb on + strand, within LRK53_RS13140at 2897.760 kb on + strand, within LRK53_RS13140at 2897.761 kb on - strand, within LRK53_RS13140at 2897.761 kb on - strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.832 kb on + strand, within LRK53_RS13140at 2897.833 kb on + strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.833 kb on - strand, within LRK53_RS13140at 2897.918 kb on + strandat 2897.919 kb on - strandat 2897.919 kb on - strandat 2898.020 kb on + strandat 2898.020 kb on + strandat 2898.020 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.043 kb on + strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.044 kb on - strandat 2898.122 kb on + strandat 2898.122 kb on + strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.123 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.184 kb on - strandat 2898.235 kb on + strandat 2898.236 kb on - strandat 2898.273 kb on + strandat 2898.273 kb on + strandat 2898.273 kb on + strandat 2898.274 kb on - strandat 2898.274 kb on - strandat 2898.274 kb on - strandat 2898.356 kb on - strandat 2898.405 kb on - strandat 2898.436 kb on + strandat 2898.436 kb on + strandat 2898.437 kb on - strandat 2898.472 kb on + strand, within LRK53_RS13145at 2898.473 kb on - strand, within LRK53_RS13145at 2898.473 kb on - strand, within LRK53_RS13145at 2898.575 kb on + strand, within LRK53_RS13145at 2898.575 kb on + strand, within LRK53_RS13145at 2898.575 kb on + strand, within LRK53_RS13145at 2898.575 kb on + strand, within LRK53_RS13145at 2898.576 kb on - strand, within LRK53_RS13145at 2898.576 kb on - strand, within LRK53_RS13145at 2898.576 kb on - strand, within LRK53_RS13145at 2898.576 kb on - strand, within LRK53_RS13145at 2898.576 kb on - strand, within LRK53_RS13145at 2898.669 kb on - strand, within LRK53_RS13145at 2898.700 kb on - strand, within LRK53_RS13145at 2898.739 kb on + strand, within LRK53_RS13145at 2898.739 kb on + strand, within LRK53_RS13145at 2898.739 kb on + strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.740 kb on - strand, within LRK53_RS13145at 2898.794 kb on + strand, within LRK53_RS13145at 2898.807 kb on + strand, within LRK53_RS13145at 2898.807 kb on + strand, within LRK53_RS13145at 2898.808 kb on - strand, within LRK53_RS13145at 2898.860 kb on + strand, within LRK53_RS13145at 2898.860 kb on + strand, within LRK53_RS13145at 2898.861 kb on - strand, within LRK53_RS13145at 2898.861 kb on - strand, within LRK53_RS13145at 2898.874 kb on - strand, within LRK53_RS13145at 2898.906 kb on + strand, within LRK53_RS13145at 2898.906 kb on + strand, within LRK53_RS13145at 2898.906 kb on + strand, within LRK53_RS13145at 2898.906 kb on + strand, within LRK53_RS13145at 2898.907 kb on - strand, within LRK53_RS13145at 2898.957 kb on + strandat 2898.957 kb on + strandat 2898.957 kb on + strandat 2898.957 kb on + strandat 2898.957 kb on + strandat 2898.957 kb on + strandat 2898.958 kb on - strandat 2898.958 kb on - strandat 2898.958 kb on - strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.993 kb on + strandat 2898.994 kb on - strandat 2898.994 kb on - strandat 2898.994 kb on - strandat 2898.994 kb on - strandat 2898.994 kb on - strandat 2898.996 kb on + strandat 2898.996 kb on + strandat 2898.997 kb on - strandat 2898.997 kb on - strandat 2898.997 kb on - strandat 2899.026 kb on + strandat 2899.026 kb on + strandat 2899.026 kb on + strandat 2899.026 kb on + strandat 2899.026 kb on + strandat 2899.026 kb on + strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.027 kb on - strandat 2899.112 kb on - strandat 2899.117 kb on + strandat 2899.118 kb on - strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.147 kb on + strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.148 kb on - strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.154 kb on + strandat 2899.155 kb on - strandat 2899.155 kb on - strandat 2899.155 kb on - strandat 2899.155 kb on - strandat 2899.176 kb on + strandat 2899.177 kb on - strandat 2899.222 kb on - strandat 2899.291 kb on + strandat 2899.291 kb on + strandat 2899.291 kb on + strandat 2899.343 kb on - strandat 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.873 kb on + strand, within LRK53_RS13150at 2899.874 kb on - strand, within LRK53_RS13150at 2899.874 kb on - strand, within LRK53_RS13150at 2899.874 kb on - strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.954 kb on + strand, within LRK53_RS13150at 2899.955 kb on - strand, within LRK53_RS13150at 2899.955 kb on - strand, within LRK53_RS13150

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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2,897,637 + LRK53_RS13140 0.75 +1.9
2,897,637 + LRK53_RS13140 0.75 +0.2
2,897,638 - LRK53_RS13140 0.75 -0.9
2,897,691 + LRK53_RS13140 0.79 -2.3
2,897,691 + LRK53_RS13140 0.79 -1.6
2,897,691 + LRK53_RS13140 0.79 -2.9
2,897,691 + LRK53_RS13140 0.79 -1.2
2,897,691 + LRK53_RS13140 0.79 -1.6
2,897,691 + LRK53_RS13140 0.79 -0.2
2,897,691 + LRK53_RS13140 0.79 -1.2
2,897,692 - LRK53_RS13140 0.79 -0.2
2,897,692 - LRK53_RS13140 0.79 -2.1
2,897,692 - LRK53_RS13140 0.79 -1.3
2,897,692 - LRK53_RS13140 0.79 -0.9
2,897,692 - LRK53_RS13140 0.79 -0.6
2,897,760 + LRK53_RS13140 0.84 -2.4
2,897,760 + LRK53_RS13140 0.84 -1.6
2,897,760 + LRK53_RS13140 0.84 -1.1
2,897,760 + LRK53_RS13140 0.84 -0.1
2,897,760 + LRK53_RS13140 0.84 -1.9
2,897,761 - LRK53_RS13140 0.84 -2.3
2,897,761 - LRK53_RS13140 0.84 -1.6
2,897,832 + LRK53_RS13140 0.89 -1.6
2,897,832 + LRK53_RS13140 0.89 -0.8
2,897,832 + LRK53_RS13140 0.89 -0.9
2,897,832 + LRK53_RS13140 0.89 -0.9
2,897,832 + LRK53_RS13140 0.89 +0.4
2,897,832 + LRK53_RS13140 0.89 -1.8
2,897,832 + LRK53_RS13140 0.89 -2.5
2,897,832 + LRK53_RS13140 0.89 -3.0
2,897,832 + LRK53_RS13140 0.89 +0.1
2,897,832 + LRK53_RS13140 0.89 -0.5
2,897,833 + LRK53_RS13140 0.89 +0.8
2,897,833 - LRK53_RS13140 0.89 -1.9
2,897,833 - LRK53_RS13140 0.89 -1.3
2,897,833 - LRK53_RS13140 0.89 -0.1
2,897,833 - LRK53_RS13140 0.89 -1.4
2,897,833 - LRK53_RS13140 0.89 -0.6
2,897,833 - LRK53_RS13140 0.89 +0.0
2,897,833 - LRK53_RS13140 0.89 -1.1
2,897,833 - LRK53_RS13140 0.89 -0.3
2,897,833 - LRK53_RS13140 0.89 -0.7
2,897,833 - LRK53_RS13140 0.89 -0.3
2,897,918 + -0.9
2,897,919 - -1.5
2,897,919 - -0.7
2,898,020 + -1.4
2,898,020 + -2.8
2,898,020 + +0.1
2,898,043 + +0.7
2,898,043 + -1.2
2,898,043 + -0.2
2,898,043 + -1.2
2,898,043 + +0.5
2,898,043 + +2.5
2,898,043 + +0.2
2,898,043 + +0.9
2,898,043 + -3.1
2,898,043 + -1.9
2,898,043 + -0.2
2,898,043 + +0.2
2,898,043 + -0.4
2,898,044 - -1.1
2,898,044 - +1.9
2,898,044 - -1.1
2,898,044 - -0.1
2,898,044 - +0.7
2,898,044 - -1.2
2,898,044 - +0.3
2,898,044 - -0.9
2,898,044 - +0.4
2,898,044 - -0.9
2,898,122 + -0.5
2,898,122 + -1.5
2,898,123 - -1.6
2,898,123 - +2.5
2,898,123 - -0.6
2,898,123 - -1.8
2,898,123 - -0.4
2,898,123 - -1.4
2,898,123 - -2.5
2,898,123 - +1.3
2,898,123 - +0.2
2,898,123 - -2.1
2,898,184 - -0.4
2,898,184 - -0.5
2,898,184 - -0.7
2,898,184 - -0.6
2,898,184 - +0.7
2,898,184 - -2.3
2,898,184 - -0.2
2,898,184 - +0.7
2,898,184 - +0.5
2,898,235 + -0.8
2,898,236 - -0.6
2,898,273 + -0.9
2,898,273 + +0.1
2,898,273 + -0.6
2,898,274 - +0.6
2,898,274 - +0.9
2,898,274 - -1.2
2,898,356 - -0.5
2,898,405 - -2.3
2,898,436 + -0.3
2,898,436 + -0.5
2,898,437 - +0.2
2,898,472 + LRK53_RS13145 0.11 +0.9
2,898,473 - LRK53_RS13145 0.11 -0.2
2,898,473 - LRK53_RS13145 0.11 +0.9
2,898,575 + LRK53_RS13145 0.29 +0.4
2,898,575 + LRK53_RS13145 0.29 -0.0
2,898,575 + LRK53_RS13145 0.29 +0.4
2,898,575 + LRK53_RS13145 0.29 -1.0
2,898,576 - LRK53_RS13145 0.29 -2.4
2,898,576 - LRK53_RS13145 0.29 -0.1
2,898,576 - LRK53_RS13145 0.29 +0.4
2,898,576 - LRK53_RS13145 0.29 +0.4
2,898,576 - LRK53_RS13145 0.29 -0.1
2,898,669 - LRK53_RS13145 0.46 +0.0
2,898,700 - LRK53_RS13145 0.51 +0.4
2,898,739 + LRK53_RS13145 0.58 -0.1
2,898,739 + LRK53_RS13145 0.58 +0.4
2,898,739 + LRK53_RS13145 0.58 -1.1
2,898,740 - LRK53_RS13145 0.58 -0.2
2,898,740 - LRK53_RS13145 0.58 +1.7
2,898,740 - LRK53_RS13145 0.58 -1.9
2,898,740 - LRK53_RS13145 0.58 -0.1
2,898,740 - LRK53_RS13145 0.58 +1.5
2,898,740 - LRK53_RS13145 0.58 +0.3
2,898,794 + LRK53_RS13145 0.68 -0.4
2,898,807 + LRK53_RS13145 0.70 -0.9
2,898,807 + LRK53_RS13145 0.70 -0.7
2,898,808 - LRK53_RS13145 0.70 -0.2
2,898,860 + LRK53_RS13145 0.79 -0.4
2,898,860 + LRK53_RS13145 0.79 -0.2
2,898,861 - LRK53_RS13145 0.80 +1.3
2,898,861 - LRK53_RS13145 0.80 +0.9
2,898,874 - LRK53_RS13145 0.82 -0.4
2,898,906 + LRK53_RS13145 0.87 +0.9
2,898,906 + LRK53_RS13145 0.87 -0.2
2,898,906 + LRK53_RS13145 0.87 +0.3
2,898,906 + LRK53_RS13145 0.87 -0.5
2,898,907 - LRK53_RS13145 0.88 -0.2
2,898,957 + +0.7
2,898,957 + -1.4
2,898,957 + +0.1
2,898,957 + -0.5
2,898,957 + +0.9
2,898,957 + +2.9
2,898,958 - -0.6
2,898,958 - -1.6
2,898,958 - -1.6
2,898,993 + -1.2
2,898,993 + +0.9
2,898,993 + +2.3
2,898,993 + -0.2
2,898,993 + +0.2
2,898,993 + -0.1
2,898,993 + -0.5
2,898,993 + -1.6
2,898,993 + +0.9
2,898,994 - -1.6
2,898,994 - -0.4
2,898,994 - -0.6
2,898,994 - +0.6
2,898,994 - +1.5
2,898,996 + -1.6
2,898,996 + -0.2
2,898,997 - +0.9
2,898,997 - -0.9
2,898,997 - +0.6
2,899,026 + +0.4
2,899,026 + -1.6
2,899,026 + +0.4
2,899,026 + +0.4
2,899,026 + +1.9
2,899,026 + -0.9
2,899,027 - +0.3
2,899,027 - -0.1
2,899,027 - +0.9
2,899,027 - +0.9
2,899,027 - -0.1
2,899,027 - -1.1
2,899,027 - -0.4
2,899,112 - -2.6
2,899,117 + +0.4
2,899,118 - +0.0
2,899,147 + -1.3
2,899,147 + +0.5
2,899,147 + -0.3
2,899,147 + -0.5
2,899,147 + +0.4
2,899,147 + -0.1
2,899,147 + -0.3
2,899,147 + -1.2
2,899,147 + -3.0
2,899,147 + -1.5
2,899,148 - -0.6
2,899,148 - +0.4
2,899,148 - -1.6
2,899,148 - -0.8
2,899,148 - -0.1
2,899,148 - +0.5
2,899,148 - +0.9
2,899,148 - -0.6
2,899,148 - +0.9
2,899,148 - -0.4
2,899,154 + -2.1
2,899,154 + -2.3
2,899,154 + +0.9
2,899,154 + +2.5
2,899,154 + -2.6
2,899,154 + -0.6
2,899,154 + -0.7
2,899,154 + +0.5
2,899,154 + -1.1
2,899,154 + -1.2
2,899,154 + -0.5
2,899,154 + -0.6
2,899,155 - -0.6
2,899,155 - -0.2
2,899,155 - +2.5
2,899,155 - -1.1
2,899,176 + -0.3
2,899,177 - -0.9
2,899,222 - -0.3
2,899,291 + -0.1
2,899,291 + +0.1
2,899,291 + +0.9
2,899,343 - +0.9
2,899,873 + LRK53_RS13150 0.50 -1.9
2,899,873 + LRK53_RS13150 0.50 -1.9
2,899,873 + LRK53_RS13150 0.50 +0.4
2,899,873 + LRK53_RS13150 0.50 -0.4
2,899,873 + LRK53_RS13150 0.50 -0.6
2,899,873 + LRK53_RS13150 0.50 -2.5
2,899,873 + LRK53_RS13150 0.50 -1.1
2,899,873 + LRK53_RS13150 0.50 +0.4
2,899,873 + LRK53_RS13150 0.50 +1.8
2,899,873 + LRK53_RS13150 0.50 -0.5
2,899,873 + LRK53_RS13150 0.50 -0.3
2,899,873 + LRK53_RS13150 0.50 -0.2
2,899,874 - LRK53_RS13150 0.51 +1.6
2,899,874 - LRK53_RS13150 0.51 -1.1
2,899,874 - LRK53_RS13150 0.51 -0.1
2,899,954 + LRK53_RS13150 0.57 -0.2
2,899,954 + LRK53_RS13150 0.57 +0.5
2,899,954 + LRK53_RS13150 0.57 -1.5
2,899,954 + LRK53_RS13150 0.57 +0.7
2,899,954 + LRK53_RS13150 0.57 -0.1
2,899,954 + LRK53_RS13150 0.57 -0.9
2,899,954 + LRK53_RS13150 0.57 +0.9
2,899,954 + LRK53_RS13150 0.57 +0.4
2,899,954 + LRK53_RS13150 0.57 -0.1
2,899,955 - LRK53_RS13150 0.58 -1.2
2,899,955 - LRK53_RS13150 0.58 +0.9

Or see this region's nucleotide sequence