Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13140 and LRK53_RS13145 are separated by 423 nucleotides LRK53_RS13145 and LRK53_RS13150 are separated by 313 nucleotides
LRK53_RS13140: LRK53_RS13140 - D-serine/D-alanine/glycine transporter, at 2,896,589 to 2,897,986
_RS13140
LRK53_RS13145: LRK53_RS13145 - hypothetical protein, at 2,898,410 to 2,898,976
_RS13145
LRK53_RS13150: LRK53_RS13150 - GGDEF domain-containing protein, at 2,899,290 to 2,900,444
_RS13150
Position (kb)
2898
2899 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2897.637 kb on + strand, within LRK53_RS13140 at 2897.637 kb on + strand, within LRK53_RS13140 at 2897.638 kb on - strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.691 kb on + strand, within LRK53_RS13140 at 2897.692 kb on - strand, within LRK53_RS13140 at 2897.692 kb on - strand, within LRK53_RS13140 at 2897.692 kb on - strand, within LRK53_RS13140 at 2897.692 kb on - strand, within LRK53_RS13140 at 2897.692 kb on - strand, within LRK53_RS13140 at 2897.760 kb on + strand, within LRK53_RS13140 at 2897.760 kb on + strand, within LRK53_RS13140 at 2897.760 kb on + strand, within LRK53_RS13140 at 2897.760 kb on + strand, within LRK53_RS13140 at 2897.760 kb on + strand, within LRK53_RS13140 at 2897.761 kb on - strand, within LRK53_RS13140 at 2897.761 kb on - strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.832 kb on + strand, within LRK53_RS13140 at 2897.833 kb on + strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.833 kb on - strand, within LRK53_RS13140 at 2897.918 kb on + strand at 2897.919 kb on - strand at 2897.919 kb on - strand at 2898.020 kb on + strand at 2898.020 kb on + strand at 2898.020 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.043 kb on + strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.044 kb on - strand at 2898.122 kb on + strand at 2898.122 kb on + strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.123 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.184 kb on - strand at 2898.235 kb on + strand at 2898.236 kb on - strand at 2898.273 kb on + strand at 2898.273 kb on + strand at 2898.273 kb on + strand at 2898.274 kb on - strand at 2898.274 kb on - strand at 2898.274 kb on - strand at 2898.356 kb on - strand at 2898.405 kb on - strand at 2898.436 kb on + strand at 2898.436 kb on + strand at 2898.437 kb on - strand at 2898.472 kb on + strand, within LRK53_RS13145 at 2898.473 kb on - strand, within LRK53_RS13145 at 2898.473 kb on - strand, within LRK53_RS13145 at 2898.575 kb on + strand, within LRK53_RS13145 at 2898.575 kb on + strand, within LRK53_RS13145 at 2898.575 kb on + strand, within LRK53_RS13145 at 2898.575 kb on + strand, within LRK53_RS13145 at 2898.576 kb on - strand, within LRK53_RS13145 at 2898.576 kb on - strand, within LRK53_RS13145 at 2898.576 kb on - strand, within LRK53_RS13145 at 2898.576 kb on - strand, within LRK53_RS13145 at 2898.576 kb on - strand, within LRK53_RS13145 at 2898.669 kb on - strand, within LRK53_RS13145 at 2898.700 kb on - strand, within LRK53_RS13145 at 2898.739 kb on + strand, within LRK53_RS13145 at 2898.739 kb on + strand, within LRK53_RS13145 at 2898.739 kb on + strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.740 kb on - strand, within LRK53_RS13145 at 2898.794 kb on + strand, within LRK53_RS13145 at 2898.807 kb on + strand, within LRK53_RS13145 at 2898.807 kb on + strand, within LRK53_RS13145 at 2898.808 kb on - strand, within LRK53_RS13145 at 2898.860 kb on + strand, within LRK53_RS13145 at 2898.860 kb on + strand, within LRK53_RS13145 at 2898.861 kb on - strand, within LRK53_RS13145 at 2898.861 kb on - strand, within LRK53_RS13145 at 2898.874 kb on - strand, within LRK53_RS13145 at 2898.906 kb on + strand, within LRK53_RS13145 at 2898.906 kb on + strand, within LRK53_RS13145 at 2898.906 kb on + strand, within LRK53_RS13145 at 2898.906 kb on + strand, within LRK53_RS13145 at 2898.907 kb on - strand, within LRK53_RS13145 at 2898.957 kb on + strand at 2898.957 kb on + strand at 2898.957 kb on + strand at 2898.957 kb on + strand at 2898.957 kb on + strand at 2898.957 kb on + strand at 2898.958 kb on - strand at 2898.958 kb on - strand at 2898.958 kb on - strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.993 kb on + strand at 2898.994 kb on - strand at 2898.994 kb on - strand at 2898.994 kb on - strand at 2898.994 kb on - strand at 2898.994 kb on - strand at 2898.996 kb on + strand at 2898.996 kb on + strand at 2898.997 kb on - strand at 2898.997 kb on - strand at 2898.997 kb on - strand at 2899.026 kb on + strand at 2899.026 kb on + strand at 2899.026 kb on + strand at 2899.026 kb on + strand at 2899.026 kb on + strand at 2899.026 kb on + strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.027 kb on - strand at 2899.112 kb on - strand at 2899.117 kb on + strand at 2899.118 kb on - strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.147 kb on + strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.148 kb on - strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.154 kb on + strand at 2899.155 kb on - strand at 2899.155 kb on - strand at 2899.155 kb on - strand at 2899.155 kb on - strand at 2899.176 kb on + strand at 2899.177 kb on - strand at 2899.222 kb on - strand at 2899.291 kb on + strand at 2899.291 kb on + strand at 2899.291 kb on + strand at 2899.343 kb on - strand at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.873 kb on + strand, within LRK53_RS13150 at 2899.874 kb on - strand, within LRK53_RS13150 at 2899.874 kb on - strand, within LRK53_RS13150 at 2899.874 kb on - strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.954 kb on + strand, within LRK53_RS13150 at 2899.955 kb on - strand, within LRK53_RS13150 at 2899.955 kb on - strand, within LRK53_RS13150
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 2,897,637 + LRK53_RS13140 0.75 +1.9 2,897,637 + LRK53_RS13140 0.75 +0.2 2,897,638 - LRK53_RS13140 0.75 -0.9 2,897,691 + LRK53_RS13140 0.79 -2.3 2,897,691 + LRK53_RS13140 0.79 -1.6 2,897,691 + LRK53_RS13140 0.79 -2.9 2,897,691 + LRK53_RS13140 0.79 -1.2 2,897,691 + LRK53_RS13140 0.79 -1.6 2,897,691 + LRK53_RS13140 0.79 -0.2 2,897,691 + LRK53_RS13140 0.79 -1.2 2,897,692 - LRK53_RS13140 0.79 -0.2 2,897,692 - LRK53_RS13140 0.79 -2.1 2,897,692 - LRK53_RS13140 0.79 -1.3 2,897,692 - LRK53_RS13140 0.79 -0.9 2,897,692 - LRK53_RS13140 0.79 -0.6 2,897,760 + LRK53_RS13140 0.84 -2.4 2,897,760 + LRK53_RS13140 0.84 -1.6 2,897,760 + LRK53_RS13140 0.84 -1.1 2,897,760 + LRK53_RS13140 0.84 -0.1 2,897,760 + LRK53_RS13140 0.84 -1.9 2,897,761 - LRK53_RS13140 0.84 -2.3 2,897,761 - LRK53_RS13140 0.84 -1.6 2,897,832 + LRK53_RS13140 0.89 -1.6 2,897,832 + LRK53_RS13140 0.89 -0.8 2,897,832 + LRK53_RS13140 0.89 -0.9 2,897,832 + LRK53_RS13140 0.89 -0.9 2,897,832 + LRK53_RS13140 0.89 +0.4 2,897,832 + LRK53_RS13140 0.89 -1.8 2,897,832 + LRK53_RS13140 0.89 -2.5 2,897,832 + LRK53_RS13140 0.89 -3.0 2,897,832 + LRK53_RS13140 0.89 +0.1 2,897,832 + LRK53_RS13140 0.89 -0.5 2,897,833 + LRK53_RS13140 0.89 +0.8 2,897,833 - LRK53_RS13140 0.89 -1.9 2,897,833 - LRK53_RS13140 0.89 -1.3 2,897,833 - LRK53_RS13140 0.89 -0.1 2,897,833 - LRK53_RS13140 0.89 -1.4 2,897,833 - LRK53_RS13140 0.89 -0.6 2,897,833 - LRK53_RS13140 0.89 +0.0 2,897,833 - LRK53_RS13140 0.89 -1.1 2,897,833 - LRK53_RS13140 0.89 -0.3 2,897,833 - LRK53_RS13140 0.89 -0.7 2,897,833 - LRK53_RS13140 0.89 -0.3 2,897,918 + -0.9 2,897,919 - -1.5 2,897,919 - -0.7 2,898,020 + -1.4 2,898,020 + -2.8 2,898,020 + +0.1 2,898,043 + +0.7 2,898,043 + -1.2 2,898,043 + -0.2 2,898,043 + -1.2 2,898,043 + +0.5 2,898,043 + +2.5 2,898,043 + +0.2 2,898,043 + +0.9 2,898,043 + -3.1 2,898,043 + -1.9 2,898,043 + -0.2 2,898,043 + +0.2 2,898,043 + -0.4 2,898,044 - -1.1 2,898,044 - +1.9 2,898,044 - -1.1 2,898,044 - -0.1 2,898,044 - +0.7 2,898,044 - -1.2 2,898,044 - +0.3 2,898,044 - -0.9 2,898,044 - +0.4 2,898,044 - -0.9 2,898,122 + -0.5 2,898,122 + -1.5 2,898,123 - -1.6 2,898,123 - +2.5 2,898,123 - -0.6 2,898,123 - -1.8 2,898,123 - -0.4 2,898,123 - -1.4 2,898,123 - -2.5 2,898,123 - +1.3 2,898,123 - +0.2 2,898,123 - -2.1 2,898,184 - -0.4 2,898,184 - -0.5 2,898,184 - -0.7 2,898,184 - -0.6 2,898,184 - +0.7 2,898,184 - -2.3 2,898,184 - -0.2 2,898,184 - +0.7 2,898,184 - +0.5 2,898,235 + -0.8 2,898,236 - -0.6 2,898,273 + -0.9 2,898,273 + +0.1 2,898,273 + -0.6 2,898,274 - +0.6 2,898,274 - +0.9 2,898,274 - -1.2 2,898,356 - -0.5 2,898,405 - -2.3 2,898,436 + -0.3 2,898,436 + -0.5 2,898,437 - +0.2 2,898,472 + LRK53_RS13145 0.11 +0.9 2,898,473 - LRK53_RS13145 0.11 -0.2 2,898,473 - LRK53_RS13145 0.11 +0.9 2,898,575 + LRK53_RS13145 0.29 +0.4 2,898,575 + LRK53_RS13145 0.29 -0.0 2,898,575 + LRK53_RS13145 0.29 +0.4 2,898,575 + LRK53_RS13145 0.29 -1.0 2,898,576 - LRK53_RS13145 0.29 -2.4 2,898,576 - LRK53_RS13145 0.29 -0.1 2,898,576 - LRK53_RS13145 0.29 +0.4 2,898,576 - LRK53_RS13145 0.29 +0.4 2,898,576 - LRK53_RS13145 0.29 -0.1 2,898,669 - LRK53_RS13145 0.46 +0.0 2,898,700 - LRK53_RS13145 0.51 +0.4 2,898,739 + LRK53_RS13145 0.58 -0.1 2,898,739 + LRK53_RS13145 0.58 +0.4 2,898,739 + LRK53_RS13145 0.58 -1.1 2,898,740 - LRK53_RS13145 0.58 -0.2 2,898,740 - LRK53_RS13145 0.58 +1.7 2,898,740 - LRK53_RS13145 0.58 -1.9 2,898,740 - LRK53_RS13145 0.58 -0.1 2,898,740 - LRK53_RS13145 0.58 +1.5 2,898,740 - LRK53_RS13145 0.58 +0.3 2,898,794 + LRK53_RS13145 0.68 -0.4 2,898,807 + LRK53_RS13145 0.70 -0.9 2,898,807 + LRK53_RS13145 0.70 -0.7 2,898,808 - LRK53_RS13145 0.70 -0.2 2,898,860 + LRK53_RS13145 0.79 -0.4 2,898,860 + LRK53_RS13145 0.79 -0.2 2,898,861 - LRK53_RS13145 0.80 +1.3 2,898,861 - LRK53_RS13145 0.80 +0.9 2,898,874 - LRK53_RS13145 0.82 -0.4 2,898,906 + LRK53_RS13145 0.87 +0.9 2,898,906 + LRK53_RS13145 0.87 -0.2 2,898,906 + LRK53_RS13145 0.87 +0.3 2,898,906 + LRK53_RS13145 0.87 -0.5 2,898,907 - LRK53_RS13145 0.88 -0.2 2,898,957 + +0.7 2,898,957 + -1.4 2,898,957 + +0.1 2,898,957 + -0.5 2,898,957 + +0.9 2,898,957 + +2.9 2,898,958 - -0.6 2,898,958 - -1.6 2,898,958 - -1.6 2,898,993 + -1.2 2,898,993 + +0.9 2,898,993 + +2.3 2,898,993 + -0.2 2,898,993 + +0.2 2,898,993 + -0.1 2,898,993 + -0.5 2,898,993 + -1.6 2,898,993 + +0.9 2,898,994 - -1.6 2,898,994 - -0.4 2,898,994 - -0.6 2,898,994 - +0.6 2,898,994 - +1.5 2,898,996 + -1.6 2,898,996 + -0.2 2,898,997 - +0.9 2,898,997 - -0.9 2,898,997 - +0.6 2,899,026 + +0.4 2,899,026 + -1.6 2,899,026 + +0.4 2,899,026 + +0.4 2,899,026 + +1.9 2,899,026 + -0.9 2,899,027 - +0.3 2,899,027 - -0.1 2,899,027 - +0.9 2,899,027 - +0.9 2,899,027 - -0.1 2,899,027 - -1.1 2,899,027 - -0.4 2,899,112 - -2.6 2,899,117 + +0.4 2,899,118 - +0.0 2,899,147 + -1.3 2,899,147 + +0.5 2,899,147 + -0.3 2,899,147 + -0.5 2,899,147 + +0.4 2,899,147 + -0.1 2,899,147 + -0.3 2,899,147 + -1.2 2,899,147 + -3.0 2,899,147 + -1.5 2,899,148 - -0.6 2,899,148 - +0.4 2,899,148 - -1.6 2,899,148 - -0.8 2,899,148 - -0.1 2,899,148 - +0.5 2,899,148 - +0.9 2,899,148 - -0.6 2,899,148 - +0.9 2,899,148 - -0.4 2,899,154 + -2.1 2,899,154 + -2.3 2,899,154 + +0.9 2,899,154 + +2.5 2,899,154 + -2.6 2,899,154 + -0.6 2,899,154 + -0.7 2,899,154 + +0.5 2,899,154 + -1.1 2,899,154 + -1.2 2,899,154 + -0.5 2,899,154 + -0.6 2,899,155 - -0.6 2,899,155 - -0.2 2,899,155 - +2.5 2,899,155 - -1.1 2,899,176 + -0.3 2,899,177 - -0.9 2,899,222 - -0.3 2,899,291 + -0.1 2,899,291 + +0.1 2,899,291 + +0.9 2,899,343 - +0.9 2,899,873 + LRK53_RS13150 0.50 -1.9 2,899,873 + LRK53_RS13150 0.50 -1.9 2,899,873 + LRK53_RS13150 0.50 +0.4 2,899,873 + LRK53_RS13150 0.50 -0.4 2,899,873 + LRK53_RS13150 0.50 -0.6 2,899,873 + LRK53_RS13150 0.50 -2.5 2,899,873 + LRK53_RS13150 0.50 -1.1 2,899,873 + LRK53_RS13150 0.50 +0.4 2,899,873 + LRK53_RS13150 0.50 +1.8 2,899,873 + LRK53_RS13150 0.50 -0.5 2,899,873 + LRK53_RS13150 0.50 -0.3 2,899,873 + LRK53_RS13150 0.50 -0.2 2,899,874 - LRK53_RS13150 0.51 +1.6 2,899,874 - LRK53_RS13150 0.51 -1.1 2,899,874 - LRK53_RS13150 0.51 -0.1 2,899,954 + LRK53_RS13150 0.57 -0.2 2,899,954 + LRK53_RS13150 0.57 +0.5 2,899,954 + LRK53_RS13150 0.57 -1.5 2,899,954 + LRK53_RS13150 0.57 +0.7 2,899,954 + LRK53_RS13150 0.57 -0.1 2,899,954 + LRK53_RS13150 0.57 -0.9 2,899,954 + LRK53_RS13150 0.57 +0.9 2,899,954 + LRK53_RS13150 0.57 +0.4 2,899,954 + LRK53_RS13150 0.57 -0.1 2,899,955 - LRK53_RS13150 0.58 -1.2 2,899,955 - LRK53_RS13150 0.58 +0.9
Or see this region's nucleotide sequence