Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13080 and LRK53_RS13085 overlap by 29 nucleotides LRK53_RS13085 and LRK53_RS13090 overlap by 4 nucleotides LRK53_RS13090 and LRK53_RS13095 are separated by 18 nucleotides LRK53_RS13095 and LRK53_RS13100 overlap by 1 nucleotides
LRK53_RS13080: LRK53_RS13080 - cbb3-type cytochrome c oxidase subunit I, at 2,886,373 to 2,887,860
_RS13080
LRK53_RS13085: LRK53_RS13085 - SCO family protein, at 2,887,832 to 2,888,446
_RS13085
LRK53_RS13090: LRK53_RS13090 - hypothetical protein, at 2,888,443 to 2,889,021
_RS13090
LRK53_RS13095: LRK53_RS13095 - AzlD domain-containing protein, at 2,889,040 to 2,889,351
_RS13095
LRK53_RS13100: LRK53_RS13100 - AzlC family ABC transporter permease, at 2,889,351 to 2,890,067
_RS13100
Position (kb)
2887
2888
2889 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2886.847 kb on + strand, within LRK53_RS13080 at 2886.847 kb on + strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.148 kb on - strand, within LRK53_RS13080 at 2887.166 kb on - strand, within LRK53_RS13080 at 2887.166 kb on - strand, within LRK53_RS13080 at 2887.181 kb on - strand, within LRK53_RS13080 at 2887.267 kb on + strand, within LRK53_RS13080 at 2887.267 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.349 kb on - strand, within LRK53_RS13080 at 2887.525 kb on + strand, within LRK53_RS13080 at 2887.525 kb on + strand, within LRK53_RS13080 at 2887.525 kb on + strand, within LRK53_RS13080 at 2887.525 kb on + strand, within LRK53_RS13080 at 2887.525 kb on + strand, within LRK53_RS13080 at 2887.526 kb on - strand, within LRK53_RS13080 at 2887.526 kb on - strand, within LRK53_RS13080 at 2887.526 kb on - strand, within LRK53_RS13080 at 2887.526 kb on - strand, within LRK53_RS13080 at 2887.526 kb on - strand, within LRK53_RS13080 at 2887.567 kb on + strand, within LRK53_RS13080 at 2887.568 kb on - strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.636 kb on + strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.637 kb on - strand, within LRK53_RS13080 at 2887.676 kb on - strand, within LRK53_RS13080 at 2887.676 kb on - strand, within LRK53_RS13080 at 2887.735 kb on + strand at 2887.735 kb on + strand at 2887.735 kb on + strand at 2887.736 kb on - strand at 2888.060 kb on + strand, within LRK53_RS13085 at 2888.060 kb on + strand, within LRK53_RS13085 at 2888.060 kb on + strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.061 kb on - strand, within LRK53_RS13085 at 2888.333 kb on + strand, within LRK53_RS13085 at 2888.334 kb on - strand, within LRK53_RS13085 at 2888.498 kb on + strand at 2888.703 kb on - strand, within LRK53_RS13090 at 2888.765 kb on + strand, within LRK53_RS13090 at 2888.765 kb on + strand, within LRK53_RS13090 at 2888.765 kb on + strand, within LRK53_RS13090 at 2888.878 kb on + strand, within LRK53_RS13090 at 2888.878 kb on + strand, within LRK53_RS13090 at 2888.878 kb on + strand, within LRK53_RS13090 at 2888.878 kb on + strand, within LRK53_RS13090 at 2888.878 kb on + strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.879 kb on - strand, within LRK53_RS13090 at 2888.895 kb on - strand, within LRK53_RS13090 at 2888.895 kb on - strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.911 kb on + strand, within LRK53_RS13090 at 2888.912 kb on - strand, within LRK53_RS13090 at 2888.912 kb on - strand, within LRK53_RS13090 at 2888.912 kb on - strand, within LRK53_RS13090 at 2888.912 kb on - strand, within LRK53_RS13090 at 2888.912 kb on - strand, within LRK53_RS13090 at 2889.048 kb on + strand at 2889.048 kb on + strand at 2889.048 kb on + strand at 2889.049 kb on - strand at 2889.049 kb on - strand at 2889.287 kb on + strand, within LRK53_RS13095 at 2889.287 kb on + strand, within LRK53_RS13095 at 2889.309 kb on - strand, within LRK53_RS13095
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 2,886,847 + LRK53_RS13080 0.32 -0.0 2,886,847 + LRK53_RS13080 0.32 -0.7 2,886,848 - LRK53_RS13080 0.32 -0.4 2,886,848 - LRK53_RS13080 0.32 -0.9 2,886,848 - LRK53_RS13080 0.32 -1.0 2,887,042 + LRK53_RS13080 0.45 -0.0 2,887,042 + LRK53_RS13080 0.45 +1.3 2,887,042 + LRK53_RS13080 0.45 +0.1 2,887,042 + LRK53_RS13080 0.45 -2.2 2,887,043 - LRK53_RS13080 0.45 +0.5 2,887,043 - LRK53_RS13080 0.45 -0.6 2,887,043 - LRK53_RS13080 0.45 +1.0 2,887,043 - LRK53_RS13080 0.45 -0.2 2,887,043 - LRK53_RS13080 0.45 -0.4 2,887,090 + LRK53_RS13080 0.48 -2.2 2,887,090 + LRK53_RS13080 0.48 +1.2 2,887,090 + LRK53_RS13080 0.48 -0.6 2,887,090 + LRK53_RS13080 0.48 +0.1 2,887,090 + LRK53_RS13080 0.48 -0.6 2,887,091 - LRK53_RS13080 0.48 -0.2 2,887,091 - LRK53_RS13080 0.48 +2.0 2,887,091 - LRK53_RS13080 0.48 -1.0 2,887,126 + LRK53_RS13080 0.51 -0.0 2,887,126 + LRK53_RS13080 0.51 -1.6 2,887,126 + LRK53_RS13080 0.51 -0.4 2,887,126 + LRK53_RS13080 0.51 -1.1 2,887,126 + LRK53_RS13080 0.51 -1.2 2,887,126 + LRK53_RS13080 0.51 -1.4 2,887,126 + LRK53_RS13080 0.51 -0.0 2,887,126 + LRK53_RS13080 0.51 -0.4 2,887,126 + LRK53_RS13080 0.51 -3.8 2,887,126 + LRK53_RS13080 0.51 -0.0 2,887,126 + LRK53_RS13080 0.51 -0.9 2,887,126 + LRK53_RS13080 0.51 -1.2 2,887,126 + LRK53_RS13080 0.51 +1.0 2,887,126 + LRK53_RS13080 0.51 -0.7 2,887,126 + LRK53_RS13080 0.51 -0.4 2,887,126 + LRK53_RS13080 0.51 -0.2 2,887,127 - LRK53_RS13080 0.51 -1.0 2,887,127 - LRK53_RS13080 0.51 -0.0 2,887,127 - LRK53_RS13080 0.51 -1.0 2,887,127 - LRK53_RS13080 0.51 -0.9 2,887,127 - LRK53_RS13080 0.51 -0.4 2,887,127 - LRK53_RS13080 0.51 -1.9 2,887,147 + LRK53_RS13080 0.52 -0.3 2,887,147 + LRK53_RS13080 0.52 +0.3 2,887,147 + LRK53_RS13080 0.52 -0.4 2,887,147 + LRK53_RS13080 0.52 -0.4 2,887,148 - LRK53_RS13080 0.52 -0.6 2,887,166 - LRK53_RS13080 0.53 +0.7 2,887,166 - LRK53_RS13080 0.53 +0.5 2,887,181 - LRK53_RS13080 0.54 +1.4 2,887,267 + LRK53_RS13080 0.60 +0.5 2,887,267 + LRK53_RS13080 0.60 -0.8 2,887,312 + LRK53_RS13080 0.63 +1.4 2,887,312 + LRK53_RS13080 0.63 -2.4 2,887,312 + LRK53_RS13080 0.63 -1.0 2,887,313 - LRK53_RS13080 0.63 -0.0 2,887,313 - LRK53_RS13080 0.63 -1.0 2,887,313 - LRK53_RS13080 0.63 -1.4 2,887,313 - LRK53_RS13080 0.63 -0.8 2,887,349 - LRK53_RS13080 0.66 -1.0 2,887,525 + LRK53_RS13080 0.77 -0.4 2,887,525 + LRK53_RS13080 0.77 -1.5 2,887,525 + LRK53_RS13080 0.77 -1.4 2,887,525 + LRK53_RS13080 0.77 -1.0 2,887,525 + LRK53_RS13080 0.77 -0.5 2,887,526 - LRK53_RS13080 0.77 -0.0 2,887,526 - LRK53_RS13080 0.77 -1.4 2,887,526 - LRK53_RS13080 0.77 -0.4 2,887,526 - LRK53_RS13080 0.77 -2.0 2,887,526 - LRK53_RS13080 0.77 +0.5 2,887,567 + LRK53_RS13080 0.80 -0.4 2,887,568 - LRK53_RS13080 0.80 -0.3 2,887,636 + LRK53_RS13080 0.85 +3.0 2,887,636 + LRK53_RS13080 0.85 -1.0 2,887,636 + LRK53_RS13080 0.85 +1.1 2,887,636 + LRK53_RS13080 0.85 -0.2 2,887,636 + LRK53_RS13080 0.85 -0.6 2,887,636 + LRK53_RS13080 0.85 -1.3 2,887,636 + LRK53_RS13080 0.85 -0.9 2,887,636 + LRK53_RS13080 0.85 +0.1 2,887,636 + LRK53_RS13080 0.85 +0.6 2,887,636 + LRK53_RS13080 0.85 +0.1 2,887,636 + LRK53_RS13080 0.85 -1.0 2,887,636 + LRK53_RS13080 0.85 -2.4 2,887,636 + LRK53_RS13080 0.85 -0.8 2,887,636 + LRK53_RS13080 0.85 +0.5 2,887,636 + LRK53_RS13080 0.85 -0.3 2,887,636 + LRK53_RS13080 0.85 -1.9 2,887,636 + LRK53_RS13080 0.85 -0.3 2,887,637 - LRK53_RS13080 0.85 +0.5 2,887,637 - LRK53_RS13080 0.85 +0.1 2,887,637 - LRK53_RS13080 0.85 +1.5 2,887,637 - LRK53_RS13080 0.85 -0.9 2,887,637 - LRK53_RS13080 0.85 -0.0 2,887,637 - LRK53_RS13080 0.85 +0.2 2,887,637 - LRK53_RS13080 0.85 +0.5 2,887,637 - LRK53_RS13080 0.85 +0.4 2,887,637 - LRK53_RS13080 0.85 -0.0 2,887,637 - LRK53_RS13080 0.85 -0.3 2,887,637 - LRK53_RS13080 0.85 +0.8 2,887,637 - LRK53_RS13080 0.85 -2.0 2,887,637 - LRK53_RS13080 0.85 +0.3 2,887,637 - LRK53_RS13080 0.85 +0.3 2,887,637 - LRK53_RS13080 0.85 -0.6 2,887,637 - LRK53_RS13080 0.85 -2.4 2,887,637 - LRK53_RS13080 0.85 +1.0 2,887,637 - LRK53_RS13080 0.85 -2.6 2,887,676 - LRK53_RS13080 0.88 +0.7 2,887,676 - LRK53_RS13080 0.88 -0.6 2,887,735 + +0.6 2,887,735 + +1.0 2,887,735 + -0.9 2,887,736 - -0.8 2,888,060 + LRK53_RS13085 0.37 -0.3 2,888,060 + LRK53_RS13085 0.37 -0.5 2,888,060 + LRK53_RS13085 0.37 -2.4 2,888,061 - LRK53_RS13085 0.37 -0.4 2,888,061 - LRK53_RS13085 0.37 -1.7 2,888,061 - LRK53_RS13085 0.37 +0.5 2,888,061 - LRK53_RS13085 0.37 -0.9 2,888,061 - LRK53_RS13085 0.37 -0.5 2,888,061 - LRK53_RS13085 0.37 -0.0 2,888,061 - LRK53_RS13085 0.37 -1.5 2,888,333 + LRK53_RS13085 0.81 +1.0 2,888,334 - LRK53_RS13085 0.82 +0.4 2,888,498 + -1.4 2,888,703 - LRK53_RS13090 0.45 -0.1 2,888,765 + LRK53_RS13090 0.56 +0.2 2,888,765 + LRK53_RS13090 0.56 +0.8 2,888,765 + LRK53_RS13090 0.56 -0.6 2,888,878 + LRK53_RS13090 0.75 -0.0 2,888,878 + LRK53_RS13090 0.75 +0.5 2,888,878 + LRK53_RS13090 0.75 -1.0 2,888,878 + LRK53_RS13090 0.75 +1.0 2,888,878 + LRK53_RS13090 0.75 -1.2 2,888,879 - LRK53_RS13090 0.75 -1.4 2,888,879 - LRK53_RS13090 0.75 -1.1 2,888,879 - LRK53_RS13090 0.75 +0.1 2,888,879 - LRK53_RS13090 0.75 +1.0 2,888,879 - LRK53_RS13090 0.75 -0.6 2,888,879 - LRK53_RS13090 0.75 -2.2 2,888,879 - LRK53_RS13090 0.75 -0.2 2,888,879 - LRK53_RS13090 0.75 +1.7 2,888,879 - LRK53_RS13090 0.75 -2.3 2,888,895 - LRK53_RS13090 0.78 +2.3 2,888,895 - LRK53_RS13090 0.78 -0.6 2,888,911 + LRK53_RS13090 0.81 -0.0 2,888,911 + LRK53_RS13090 0.81 -2.4 2,888,911 + LRK53_RS13090 0.81 -0.2 2,888,911 + LRK53_RS13090 0.81 +1.7 2,888,911 + LRK53_RS13090 0.81 -0.4 2,888,911 + LRK53_RS13090 0.81 -0.1 2,888,911 + LRK53_RS13090 0.81 -0.5 2,888,911 + LRK53_RS13090 0.81 -0.3 2,888,911 + LRK53_RS13090 0.81 +0.7 2,888,911 + LRK53_RS13090 0.81 -1.9 2,888,911 + LRK53_RS13090 0.81 -0.6 2,888,912 - LRK53_RS13090 0.81 -0.6 2,888,912 - LRK53_RS13090 0.81 -1.0 2,888,912 - LRK53_RS13090 0.81 +1.4 2,888,912 - LRK53_RS13090 0.81 +1.0 2,888,912 - LRK53_RS13090 0.81 -0.6 2,889,048 + +0.4 2,889,048 + -1.2 2,889,048 + -0.7 2,889,049 - +1.4 2,889,049 - -1.0 2,889,287 + LRK53_RS13095 0.79 -0.4 2,889,287 + LRK53_RS13095 0.79 +0.3 2,889,309 - LRK53_RS13095 0.86 -0.4
Or see this region's nucleotide sequence