Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13085

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13080 and LRK53_RS13085 overlap by 29 nucleotidesLRK53_RS13085 and LRK53_RS13090 overlap by 4 nucleotidesLRK53_RS13090 and LRK53_RS13095 are separated by 18 nucleotidesLRK53_RS13095 and LRK53_RS13100 overlap by 1 nucleotides LRK53_RS13080: LRK53_RS13080 - cbb3-type cytochrome c oxidase subunit I, at 2,886,373 to 2,887,860 _RS13080 LRK53_RS13085: LRK53_RS13085 - SCO family protein, at 2,887,832 to 2,888,446 _RS13085 LRK53_RS13090: LRK53_RS13090 - hypothetical protein, at 2,888,443 to 2,889,021 _RS13090 LRK53_RS13095: LRK53_RS13095 - AzlD domain-containing protein, at 2,889,040 to 2,889,351 _RS13095 LRK53_RS13100: LRK53_RS13100 - AzlC family ABC transporter permease, at 2,889,351 to 2,890,067 _RS13100 Position (kb) 2887 2888 2889Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2886.847 kb on + strand, within LRK53_RS13080at 2886.847 kb on + strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.148 kb on - strand, within LRK53_RS13080at 2887.166 kb on - strand, within LRK53_RS13080at 2887.166 kb on - strand, within LRK53_RS13080at 2887.181 kb on - strand, within LRK53_RS13080at 2887.267 kb on + strand, within LRK53_RS13080at 2887.267 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.349 kb on - strand, within LRK53_RS13080at 2887.525 kb on + strand, within LRK53_RS13080at 2887.525 kb on + strand, within LRK53_RS13080at 2887.525 kb on + strand, within LRK53_RS13080at 2887.525 kb on + strand, within LRK53_RS13080at 2887.525 kb on + strand, within LRK53_RS13080at 2887.526 kb on - strand, within LRK53_RS13080at 2887.526 kb on - strand, within LRK53_RS13080at 2887.526 kb on - strand, within LRK53_RS13080at 2887.526 kb on - strand, within LRK53_RS13080at 2887.526 kb on - strand, within LRK53_RS13080at 2887.567 kb on + strand, within LRK53_RS13080at 2887.568 kb on - strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.636 kb on + strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.637 kb on - strand, within LRK53_RS13080at 2887.676 kb on - strand, within LRK53_RS13080at 2887.676 kb on - strand, within LRK53_RS13080at 2887.735 kb on + strandat 2887.735 kb on + strandat 2887.735 kb on + strandat 2887.736 kb on - strandat 2888.060 kb on + strand, within LRK53_RS13085at 2888.060 kb on + strand, within LRK53_RS13085at 2888.060 kb on + strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.061 kb on - strand, within LRK53_RS13085at 2888.333 kb on + strand, within LRK53_RS13085at 2888.334 kb on - strand, within LRK53_RS13085at 2888.498 kb on + strandat 2888.703 kb on - strand, within LRK53_RS13090at 2888.765 kb on + strand, within LRK53_RS13090at 2888.765 kb on + strand, within LRK53_RS13090at 2888.765 kb on + strand, within LRK53_RS13090at 2888.878 kb on + strand, within LRK53_RS13090at 2888.878 kb on + strand, within LRK53_RS13090at 2888.878 kb on + strand, within LRK53_RS13090at 2888.878 kb on + strand, within LRK53_RS13090at 2888.878 kb on + strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.879 kb on - strand, within LRK53_RS13090at 2888.895 kb on - strand, within LRK53_RS13090at 2888.895 kb on - strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.911 kb on + strand, within LRK53_RS13090at 2888.912 kb on - strand, within LRK53_RS13090at 2888.912 kb on - strand, within LRK53_RS13090at 2888.912 kb on - strand, within LRK53_RS13090at 2888.912 kb on - strand, within LRK53_RS13090at 2888.912 kb on - strand, within LRK53_RS13090at 2889.048 kb on + strandat 2889.048 kb on + strandat 2889.048 kb on + strandat 2889.049 kb on - strandat 2889.049 kb on - strandat 2889.287 kb on + strand, within LRK53_RS13095at 2889.287 kb on + strand, within LRK53_RS13095at 2889.309 kb on - strand, within LRK53_RS13095

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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2,886,847 + LRK53_RS13080 0.32 -0.0
2,886,847 + LRK53_RS13080 0.32 -0.7
2,886,848 - LRK53_RS13080 0.32 -0.4
2,886,848 - LRK53_RS13080 0.32 -0.9
2,886,848 - LRK53_RS13080 0.32 -1.0
2,887,042 + LRK53_RS13080 0.45 -0.0
2,887,042 + LRK53_RS13080 0.45 +1.3
2,887,042 + LRK53_RS13080 0.45 +0.1
2,887,042 + LRK53_RS13080 0.45 -2.2
2,887,043 - LRK53_RS13080 0.45 +0.5
2,887,043 - LRK53_RS13080 0.45 -0.6
2,887,043 - LRK53_RS13080 0.45 +1.0
2,887,043 - LRK53_RS13080 0.45 -0.2
2,887,043 - LRK53_RS13080 0.45 -0.4
2,887,090 + LRK53_RS13080 0.48 -2.2
2,887,090 + LRK53_RS13080 0.48 +1.2
2,887,090 + LRK53_RS13080 0.48 -0.6
2,887,090 + LRK53_RS13080 0.48 +0.1
2,887,090 + LRK53_RS13080 0.48 -0.6
2,887,091 - LRK53_RS13080 0.48 -0.2
2,887,091 - LRK53_RS13080 0.48 +2.0
2,887,091 - LRK53_RS13080 0.48 -1.0
2,887,126 + LRK53_RS13080 0.51 -0.0
2,887,126 + LRK53_RS13080 0.51 -1.6
2,887,126 + LRK53_RS13080 0.51 -0.4
2,887,126 + LRK53_RS13080 0.51 -1.1
2,887,126 + LRK53_RS13080 0.51 -1.2
2,887,126 + LRK53_RS13080 0.51 -1.4
2,887,126 + LRK53_RS13080 0.51 -0.0
2,887,126 + LRK53_RS13080 0.51 -0.4
2,887,126 + LRK53_RS13080 0.51 -3.8
2,887,126 + LRK53_RS13080 0.51 -0.0
2,887,126 + LRK53_RS13080 0.51 -0.9
2,887,126 + LRK53_RS13080 0.51 -1.2
2,887,126 + LRK53_RS13080 0.51 +1.0
2,887,126 + LRK53_RS13080 0.51 -0.7
2,887,126 + LRK53_RS13080 0.51 -0.4
2,887,126 + LRK53_RS13080 0.51 -0.2
2,887,127 - LRK53_RS13080 0.51 -1.0
2,887,127 - LRK53_RS13080 0.51 -0.0
2,887,127 - LRK53_RS13080 0.51 -1.0
2,887,127 - LRK53_RS13080 0.51 -0.9
2,887,127 - LRK53_RS13080 0.51 -0.4
2,887,127 - LRK53_RS13080 0.51 -1.9
2,887,147 + LRK53_RS13080 0.52 -0.3
2,887,147 + LRK53_RS13080 0.52 +0.3
2,887,147 + LRK53_RS13080 0.52 -0.4
2,887,147 + LRK53_RS13080 0.52 -0.4
2,887,148 - LRK53_RS13080 0.52 -0.6
2,887,166 - LRK53_RS13080 0.53 +0.7
2,887,166 - LRK53_RS13080 0.53 +0.5
2,887,181 - LRK53_RS13080 0.54 +1.4
2,887,267 + LRK53_RS13080 0.60 +0.5
2,887,267 + LRK53_RS13080 0.60 -0.8
2,887,312 + LRK53_RS13080 0.63 +1.4
2,887,312 + LRK53_RS13080 0.63 -2.4
2,887,312 + LRK53_RS13080 0.63 -1.0
2,887,313 - LRK53_RS13080 0.63 -0.0
2,887,313 - LRK53_RS13080 0.63 -1.0
2,887,313 - LRK53_RS13080 0.63 -1.4
2,887,313 - LRK53_RS13080 0.63 -0.8
2,887,349 - LRK53_RS13080 0.66 -1.0
2,887,525 + LRK53_RS13080 0.77 -0.4
2,887,525 + LRK53_RS13080 0.77 -1.5
2,887,525 + LRK53_RS13080 0.77 -1.4
2,887,525 + LRK53_RS13080 0.77 -1.0
2,887,525 + LRK53_RS13080 0.77 -0.5
2,887,526 - LRK53_RS13080 0.77 -0.0
2,887,526 - LRK53_RS13080 0.77 -1.4
2,887,526 - LRK53_RS13080 0.77 -0.4
2,887,526 - LRK53_RS13080 0.77 -2.0
2,887,526 - LRK53_RS13080 0.77 +0.5
2,887,567 + LRK53_RS13080 0.80 -0.4
2,887,568 - LRK53_RS13080 0.80 -0.3
2,887,636 + LRK53_RS13080 0.85 +3.0
2,887,636 + LRK53_RS13080 0.85 -1.0
2,887,636 + LRK53_RS13080 0.85 +1.1
2,887,636 + LRK53_RS13080 0.85 -0.2
2,887,636 + LRK53_RS13080 0.85 -0.6
2,887,636 + LRK53_RS13080 0.85 -1.3
2,887,636 + LRK53_RS13080 0.85 -0.9
2,887,636 + LRK53_RS13080 0.85 +0.1
2,887,636 + LRK53_RS13080 0.85 +0.6
2,887,636 + LRK53_RS13080 0.85 +0.1
2,887,636 + LRK53_RS13080 0.85 -1.0
2,887,636 + LRK53_RS13080 0.85 -2.4
2,887,636 + LRK53_RS13080 0.85 -0.8
2,887,636 + LRK53_RS13080 0.85 +0.5
2,887,636 + LRK53_RS13080 0.85 -0.3
2,887,636 + LRK53_RS13080 0.85 -1.9
2,887,636 + LRK53_RS13080 0.85 -0.3
2,887,637 - LRK53_RS13080 0.85 +0.5
2,887,637 - LRK53_RS13080 0.85 +0.1
2,887,637 - LRK53_RS13080 0.85 +1.5
2,887,637 - LRK53_RS13080 0.85 -0.9
2,887,637 - LRK53_RS13080 0.85 -0.0
2,887,637 - LRK53_RS13080 0.85 +0.2
2,887,637 - LRK53_RS13080 0.85 +0.5
2,887,637 - LRK53_RS13080 0.85 +0.4
2,887,637 - LRK53_RS13080 0.85 -0.0
2,887,637 - LRK53_RS13080 0.85 -0.3
2,887,637 - LRK53_RS13080 0.85 +0.8
2,887,637 - LRK53_RS13080 0.85 -2.0
2,887,637 - LRK53_RS13080 0.85 +0.3
2,887,637 - LRK53_RS13080 0.85 +0.3
2,887,637 - LRK53_RS13080 0.85 -0.6
2,887,637 - LRK53_RS13080 0.85 -2.4
2,887,637 - LRK53_RS13080 0.85 +1.0
2,887,637 - LRK53_RS13080 0.85 -2.6
2,887,676 - LRK53_RS13080 0.88 +0.7
2,887,676 - LRK53_RS13080 0.88 -0.6
2,887,735 + +0.6
2,887,735 + +1.0
2,887,735 + -0.9
2,887,736 - -0.8
2,888,060 + LRK53_RS13085 0.37 -0.3
2,888,060 + LRK53_RS13085 0.37 -0.5
2,888,060 + LRK53_RS13085 0.37 -2.4
2,888,061 - LRK53_RS13085 0.37 -0.4
2,888,061 - LRK53_RS13085 0.37 -1.7
2,888,061 - LRK53_RS13085 0.37 +0.5
2,888,061 - LRK53_RS13085 0.37 -0.9
2,888,061 - LRK53_RS13085 0.37 -0.5
2,888,061 - LRK53_RS13085 0.37 -0.0
2,888,061 - LRK53_RS13085 0.37 -1.5
2,888,333 + LRK53_RS13085 0.81 +1.0
2,888,334 - LRK53_RS13085 0.82 +0.4
2,888,498 + -1.4
2,888,703 - LRK53_RS13090 0.45 -0.1
2,888,765 + LRK53_RS13090 0.56 +0.2
2,888,765 + LRK53_RS13090 0.56 +0.8
2,888,765 + LRK53_RS13090 0.56 -0.6
2,888,878 + LRK53_RS13090 0.75 -0.0
2,888,878 + LRK53_RS13090 0.75 +0.5
2,888,878 + LRK53_RS13090 0.75 -1.0
2,888,878 + LRK53_RS13090 0.75 +1.0
2,888,878 + LRK53_RS13090 0.75 -1.2
2,888,879 - LRK53_RS13090 0.75 -1.4
2,888,879 - LRK53_RS13090 0.75 -1.1
2,888,879 - LRK53_RS13090 0.75 +0.1
2,888,879 - LRK53_RS13090 0.75 +1.0
2,888,879 - LRK53_RS13090 0.75 -0.6
2,888,879 - LRK53_RS13090 0.75 -2.2
2,888,879 - LRK53_RS13090 0.75 -0.2
2,888,879 - LRK53_RS13090 0.75 +1.7
2,888,879 - LRK53_RS13090 0.75 -2.3
2,888,895 - LRK53_RS13090 0.78 +2.3
2,888,895 - LRK53_RS13090 0.78 -0.6
2,888,911 + LRK53_RS13090 0.81 -0.0
2,888,911 + LRK53_RS13090 0.81 -2.4
2,888,911 + LRK53_RS13090 0.81 -0.2
2,888,911 + LRK53_RS13090 0.81 +1.7
2,888,911 + LRK53_RS13090 0.81 -0.4
2,888,911 + LRK53_RS13090 0.81 -0.1
2,888,911 + LRK53_RS13090 0.81 -0.5
2,888,911 + LRK53_RS13090 0.81 -0.3
2,888,911 + LRK53_RS13090 0.81 +0.7
2,888,911 + LRK53_RS13090 0.81 -1.9
2,888,911 + LRK53_RS13090 0.81 -0.6
2,888,912 - LRK53_RS13090 0.81 -0.6
2,888,912 - LRK53_RS13090 0.81 -1.0
2,888,912 - LRK53_RS13090 0.81 +1.4
2,888,912 - LRK53_RS13090 0.81 +1.0
2,888,912 - LRK53_RS13090 0.81 -0.6
2,889,048 + +0.4
2,889,048 + -1.2
2,889,048 + -0.7
2,889,049 - +1.4
2,889,049 - -1.0
2,889,287 + LRK53_RS13095 0.79 -0.4
2,889,287 + LRK53_RS13095 0.79 +0.3
2,889,309 - LRK53_RS13095 0.86 -0.4

Or see this region's nucleotide sequence