Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11830

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11825 and LRK53_RS11830 are separated by 67 nucleotidesLRK53_RS11830 and LRK53_RS11835 are separated by 13 nucleotides LRK53_RS11825: LRK53_RS11825 - exodeoxyribonuclease VII large subunit, at 2,633,174 to 2,634,523 _RS11825 LRK53_RS11830: LRK53_RS11830 - acetolactate synthase large subunit, at 2,634,591 to 2,636,234 _RS11830 LRK53_RS11835: LRK53_RS11835 - aldehyde dehydrogenase family protein, at 2,636,248 to 2,637,678 _RS11835 Position (kb) 2634 2635 2636 2637Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2633.597 kb on + strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2634.463 kb on + strandat 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2635.116 kb on + strand, within LRK53_RS11830at 2635.116 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830at 2635.535 kb on + strand, within LRK53_RS11830at 2635.535 kb on + strand, within LRK53_RS11830at 2635.536 kb on - strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.737 kb on + strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.738 kb on - strand, within LRK53_RS11830at 2635.749 kb on + strand, within LRK53_RS11830at 2635.749 kb on + strand, within LRK53_RS11830at 2635.749 kb on + strand, within LRK53_RS11830at 2635.750 kb on - strand, within LRK53_RS11830at 2635.750 kb on - strand, within LRK53_RS11830at 2635.750 kb on - strand, within LRK53_RS11830at 2635.750 kb on - strand, within LRK53_RS11830at 2635.750 kb on - strand, within LRK53_RS11830at 2635.758 kb on + strand, within LRK53_RS11830at 2635.758 kb on + strand, within LRK53_RS11830at 2635.759 kb on - strand, within LRK53_RS11830at 2635.761 kb on + strand, within LRK53_RS11830at 2635.761 kb on + strand, within LRK53_RS11830at 2635.762 kb on - strand, within LRK53_RS11830at 2635.762 kb on - strand, within LRK53_RS11830at 2635.762 kb on - strand, within LRK53_RS11830at 2636.013 kb on + strand, within LRK53_RS11830at 2636.013 kb on + strand, within LRK53_RS11830at 2636.013 kb on + strand, within LRK53_RS11830at 2636.014 kb on - strand, within LRK53_RS11830at 2636.014 kb on - strand, within LRK53_RS11830at 2636.023 kb on - strand, within LRK53_RS11830at 2636.133 kb on + strandat 2636.133 kb on + strandat 2636.133 kb on + strandat 2636.134 kb on - strandat 2636.134 kb on - strandat 2636.175 kb on + strandat 2636.175 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.263 kb on + strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.264 kb on - strandat 2636.269 kb on + strandat 2636.269 kb on + strandat 2636.269 kb on + strandat 2636.269 kb on + strandat 2636.270 kb on - strandat 2636.270 kb on - strandat 2636.270 kb on - strandat 2636.270 kb on - strandat 2636.272 kb on + strandat 2636.272 kb on + strandat 2636.272 kb on + strandat 2636.272 kb on + strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.273 kb on - strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.326 kb on + strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.327 kb on - strandat 2636.651 kb on - strand, within LRK53_RS11835at 2636.659 kb on + strand, within LRK53_RS11835at 2636.659 kb on + strand, within LRK53_RS11835at 2636.659 kb on + strand, within LRK53_RS11835at 2636.659 kb on + strand, within LRK53_RS11835at 2637.079 kb on + strand, within LRK53_RS11835at 2637.079 kb on + strand, within LRK53_RS11835at 2637.080 kb on - strand, within LRK53_RS11835at 2637.080 kb on - strand, within LRK53_RS11835at 2637.080 kb on - strand, within LRK53_RS11835at 2637.080 kb on - strand, within LRK53_RS11835at 2637.118 kb on + strand, within LRK53_RS11835at 2637.118 kb on + strand, within LRK53_RS11835at 2637.118 kb on + strand, within LRK53_RS11835at 2637.118 kb on + strand, within LRK53_RS11835at 2637.118 kb on + strand, within LRK53_RS11835at 2637.119 kb on - strand, within LRK53_RS11835at 2637.119 kb on - strand, within LRK53_RS11835at 2637.119 kb on - strand, within LRK53_RS11835at 2637.119 kb on - strand, within LRK53_RS11835at 2637.119 kb on - strand, within LRK53_RS11835at 2637.136 kb on + strand, within LRK53_RS11835at 2637.136 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.209 kb on + strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835at 2637.210 kb on - strand, within LRK53_RS11835

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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2,633,597 + LRK53_RS11825 0.31 -0.6
2,633,598 - LRK53_RS11825 0.31 -0.0
2,633,598 - LRK53_RS11825 0.31 +1.0
2,633,598 - LRK53_RS11825 0.31 -1.6
2,633,598 - LRK53_RS11825 0.31 +0.4
2,634,463 + +0.8
2,634,840 + LRK53_RS11830 0.15 -1.3
2,634,840 + LRK53_RS11830 0.15 -1.0
2,634,840 + LRK53_RS11830 0.15 -0.6
2,634,840 + LRK53_RS11830 0.15 -1.1
2,634,840 + LRK53_RS11830 0.15 -0.9
2,634,840 + LRK53_RS11830 0.15 -0.6
2,634,840 + LRK53_RS11830 0.15 +0.3
2,634,840 + LRK53_RS11830 0.15 +0.8
2,634,841 - LRK53_RS11830 0.15 +0.3
2,634,841 - LRK53_RS11830 0.15 -0.1
2,634,841 - LRK53_RS11830 0.15 +2.3
2,634,841 - LRK53_RS11830 0.15 +1.0
2,634,841 - LRK53_RS11830 0.15 -1.1
2,634,841 - LRK53_RS11830 0.15 -0.3
2,634,841 - LRK53_RS11830 0.15 -0.0
2,634,841 - LRK53_RS11830 0.15 +1.0
2,634,960 + LRK53_RS11830 0.22 -0.2
2,634,960 + LRK53_RS11830 0.22 -0.3
2,634,960 + LRK53_RS11830 0.22 -1.3
2,634,960 + LRK53_RS11830 0.22 -0.0
2,634,960 + LRK53_RS11830 0.22 -0.1
2,634,960 + LRK53_RS11830 0.22 -0.6
2,634,961 - LRK53_RS11830 0.23 -1.9
2,634,961 - LRK53_RS11830 0.23 -0.0
2,634,961 - LRK53_RS11830 0.23 -1.6
2,634,961 - LRK53_RS11830 0.23 -1.3
2,634,961 - LRK53_RS11830 0.23 -0.3
2,635,116 + LRK53_RS11830 0.32 -0.3
2,635,116 + LRK53_RS11830 0.32 +1.5
2,635,497 + LRK53_RS11830 0.55 -1.1
2,635,497 + LRK53_RS11830 0.55 -0.4
2,635,497 + LRK53_RS11830 0.55 -0.3
2,635,498 - LRK53_RS11830 0.55 -0.6
2,635,498 - LRK53_RS11830 0.55 -1.0
2,635,535 + LRK53_RS11830 0.57 -0.6
2,635,535 + LRK53_RS11830 0.57 -0.5
2,635,536 - LRK53_RS11830 0.57 -1.0
2,635,737 + LRK53_RS11830 0.70 -1.6
2,635,737 + LRK53_RS11830 0.70 +0.3
2,635,737 + LRK53_RS11830 0.70 +0.3
2,635,737 + LRK53_RS11830 0.70 -0.2
2,635,737 + LRK53_RS11830 0.70 -0.7
2,635,737 + LRK53_RS11830 0.70 +1.4
2,635,737 + LRK53_RS11830 0.70 -0.6
2,635,737 + LRK53_RS11830 0.70 -0.3
2,635,737 + LRK53_RS11830 0.70 -0.6
2,635,737 + LRK53_RS11830 0.70 +0.8
2,635,737 + LRK53_RS11830 0.70 -0.6
2,635,737 + LRK53_RS11830 0.70 +0.3
2,635,737 + LRK53_RS11830 0.70 -0.6
2,635,737 + LRK53_RS11830 0.70 -0.6
2,635,737 + LRK53_RS11830 0.70 -0.3
2,635,738 - LRK53_RS11830 0.70 +1.0
2,635,738 - LRK53_RS11830 0.70 -0.7
2,635,738 - LRK53_RS11830 0.70 -1.2
2,635,738 - LRK53_RS11830 0.70 -0.6
2,635,738 - LRK53_RS11830 0.70 +1.0
2,635,738 - LRK53_RS11830 0.70 -1.9
2,635,738 - LRK53_RS11830 0.70 -0.4
2,635,738 - LRK53_RS11830 0.70 +0.4
2,635,738 - LRK53_RS11830 0.70 -2.8
2,635,738 - LRK53_RS11830 0.70 +0.6
2,635,738 - LRK53_RS11830 0.70 +1.0
2,635,738 - LRK53_RS11830 0.70 -1.6
2,635,738 - LRK53_RS11830 0.70 -1.8
2,635,738 - LRK53_RS11830 0.70 +1.0
2,635,738 - LRK53_RS11830 0.70 -1.2
2,635,738 - LRK53_RS11830 0.70 +0.7
2,635,738 - LRK53_RS11830 0.70 +1.4
2,635,738 - LRK53_RS11830 0.70 +0.1
2,635,738 - LRK53_RS11830 0.70 -0.0
2,635,749 + LRK53_RS11830 0.70 -0.4
2,635,749 + LRK53_RS11830 0.70 -0.5
2,635,749 + LRK53_RS11830 0.70 -1.8
2,635,750 - LRK53_RS11830 0.70 +0.1
2,635,750 - LRK53_RS11830 0.70 -0.3
2,635,750 - LRK53_RS11830 0.70 +0.6
2,635,750 - LRK53_RS11830 0.70 +0.2
2,635,750 - LRK53_RS11830 0.70 -0.6
2,635,758 + LRK53_RS11830 0.71 +0.5
2,635,758 + LRK53_RS11830 0.71 -0.6
2,635,759 - LRK53_RS11830 0.71 -1.3
2,635,761 + LRK53_RS11830 0.71 -0.0
2,635,761 + LRK53_RS11830 0.71 -1.8
2,635,762 - LRK53_RS11830 0.71 +1.6
2,635,762 - LRK53_RS11830 0.71 -1.8
2,635,762 - LRK53_RS11830 0.71 -1.3
2,636,013 + LRK53_RS11830 0.86 -0.8
2,636,013 + LRK53_RS11830 0.86 -1.0
2,636,013 + LRK53_RS11830 0.86 -1.3
2,636,014 - LRK53_RS11830 0.87 -1.5
2,636,014 - LRK53_RS11830 0.87 -0.1
2,636,023 - LRK53_RS11830 0.87 -2.3
2,636,133 + -1.0
2,636,133 + +1.2
2,636,133 + -2.6
2,636,134 - -0.4
2,636,134 - -1.1
2,636,175 + -0.3
2,636,175 + -0.9
2,636,263 + -0.0
2,636,263 + -0.1
2,636,263 + +1.6
2,636,263 + -0.9
2,636,263 + +0.5
2,636,263 + -0.7
2,636,263 + +2.4
2,636,263 + -0.7
2,636,263 + +0.6
2,636,263 + -0.5
2,636,263 + -0.9
2,636,264 - -0.4
2,636,264 - -0.5
2,636,264 - +0.6
2,636,264 - -0.2
2,636,264 - +0.8
2,636,264 - -0.3
2,636,264 - +1.5
2,636,264 - -1.2
2,636,264 - -0.6
2,636,264 - -0.7
2,636,264 - -0.6
2,636,269 + -0.2
2,636,269 + +3.6
2,636,269 + -1.0
2,636,269 + -0.8
2,636,270 - -1.0
2,636,270 - +0.3
2,636,270 - +1.6
2,636,270 - -0.3
2,636,272 + +0.7
2,636,272 + -0.3
2,636,272 + -1.0
2,636,272 + -0.8
2,636,273 - -1.0
2,636,273 - +1.0
2,636,273 - -0.4
2,636,273 - +1.6
2,636,273 - -2.3
2,636,273 - +1.5
2,636,273 - -2.6
2,636,273 - -0.9
2,636,273 - +0.2
2,636,326 + -0.3
2,636,326 + -0.8
2,636,326 + -0.4
2,636,326 + -0.3
2,636,326 + -0.7
2,636,326 + +0.2
2,636,326 + -0.8
2,636,327 - -0.9
2,636,327 - +1.0
2,636,327 - +0.4
2,636,327 - +1.0
2,636,327 - +1.3
2,636,327 - -0.6
2,636,327 - -1.3
2,636,651 - LRK53_RS11835 0.28 -0.7
2,636,659 + LRK53_RS11835 0.29 +1.0
2,636,659 + LRK53_RS11835 0.29 +0.3
2,636,659 + LRK53_RS11835 0.29 +1.0
2,636,659 + LRK53_RS11835 0.29 -0.3
2,637,079 + LRK53_RS11835 0.58 -2.0
2,637,079 + LRK53_RS11835 0.58 -0.3
2,637,080 - LRK53_RS11835 0.58 +1.0
2,637,080 - LRK53_RS11835 0.58 -0.0
2,637,080 - LRK53_RS11835 0.58 +0.3
2,637,080 - LRK53_RS11835 0.58 -0.9
2,637,118 + LRK53_RS11835 0.61 +1.4
2,637,118 + LRK53_RS11835 0.61 -0.8
2,637,118 + LRK53_RS11835 0.61 -0.5
2,637,118 + LRK53_RS11835 0.61 -0.8
2,637,118 + LRK53_RS11835 0.61 +0.4
2,637,119 - LRK53_RS11835 0.61 -0.0
2,637,119 - LRK53_RS11835 0.61 -0.0
2,637,119 - LRK53_RS11835 0.61 -2.2
2,637,119 - LRK53_RS11835 0.61 -0.2
2,637,119 - LRK53_RS11835 0.61 +3.0
2,637,136 + LRK53_RS11835 0.62 -0.3
2,637,136 + LRK53_RS11835 0.62 -1.6
2,637,209 + LRK53_RS11835 0.67 -1.0
2,637,209 + LRK53_RS11835 0.67 -0.6
2,637,209 + LRK53_RS11835 0.67 -0.0
2,637,209 + LRK53_RS11835 0.67 -1.6
2,637,209 + LRK53_RS11835 0.67 +1.0
2,637,209 + LRK53_RS11835 0.67 +0.7
2,637,209 + LRK53_RS11835 0.67 -1.0
2,637,209 + LRK53_RS11835 0.67 +0.7
2,637,209 + LRK53_RS11835 0.67 -0.3
2,637,209 + LRK53_RS11835 0.67 -0.5
2,637,209 + LRK53_RS11835 0.67 -2.0
2,637,210 - LRK53_RS11835 0.67 -0.3
2,637,210 - LRK53_RS11835 0.67 +1.0
2,637,210 - LRK53_RS11835 0.67 +1.0
2,637,210 - LRK53_RS11835 0.67 -1.0
2,637,210 - LRK53_RS11835 0.67 -0.5
2,637,210 - LRK53_RS11835 0.67 +0.1
2,637,210 - LRK53_RS11835 0.67 -0.2
2,637,210 - LRK53_RS11835 0.67 +0.4

Or see this region's nucleotide sequence