Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08550 and LRK53_RS08555 are separated by 175 nucleotides LRK53_RS08555 and LRK53_RS08560 are separated by 128 nucleotides LRK53_RS08560 and LRK53_RS08565 are separated by 41 nucleotides
LRK53_RS08550: LRK53_RS08550 - ABC transporter ATP-binding protein/permease, at 1,919,452 to 1,921,299
_RS08550
LRK53_RS08555: LRK53_RS08555 - peptide-methionine (S)-S-oxide reductase MsrA, at 1,921,475 to 1,922,155
_RS08555
LRK53_RS08560: LRK53_RS08560 - arylamine N-acetyltransferase, at 1,922,284 to 1,923,090
_RS08560
LRK53_RS08565: LRK53_RS08565 - winged helix-turn-helix domain-containing protein, at 1,923,132 to 1,923,656
_RS08565
Position (kb) 1921
1922
1923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1920.512 kb on + strand, within LRK53_RS08550 at 1920.617 kb on + strand, within LRK53_RS08550 at 1920.617 kb on + strand, within LRK53_RS08550 at 1920.617 kb on + strand, within LRK53_RS08550 at 1920.617 kb on + strand, within LRK53_RS08550 at 1920.617 kb on + strand, within LRK53_RS08550 at 1920.618 kb on - strand, within LRK53_RS08550 at 1920.618 kb on - strand, within LRK53_RS08550 at 1920.618 kb on - strand, within LRK53_RS08550 at 1920.764 kb on + strand, within LRK53_RS08550 at 1920.764 kb on + strand, within LRK53_RS08550 at 1920.764 kb on + strand, within LRK53_RS08550 at 1920.764 kb on + strand, within LRK53_RS08550 at 1920.765 kb on - strand, within LRK53_RS08550 at 1920.867 kb on - strand, within LRK53_RS08550 at 1920.867 kb on - strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.037 kb on + strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.038 kb on - strand, within LRK53_RS08550 at 1921.039 kb on + strand, within LRK53_RS08550 at 1921.384 kb on - strand at 1921.384 kb on - strand at 1921.384 kb on - strand at 1921.476 kb on + strand at 1921.476 kb on + strand at 1921.476 kb on + strand at 1921.491 kb on + strand at 1921.491 kb on + strand at 1921.491 kb on + strand at 1921.492 kb on - strand at 1921.492 kb on - strand at 1921.492 kb on - strand at 1921.492 kb on - strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.493 kb on + strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.494 kb on - strand at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.551 kb on + strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.552 kb on - strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.560 kb on + strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.561 kb on - strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.578 kb on + strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.579 kb on - strand, within LRK53_RS08555 at 1921.590 kb on + strand, within LRK53_RS08555 at 1921.590 kb on + strand, within LRK53_RS08555 at 1921.591 kb on - strand, within LRK53_RS08555 at 1921.591 kb on - strand, within LRK53_RS08555 at 1921.605 kb on + strand, within LRK53_RS08555 at 1921.625 kb on + strand, within LRK53_RS08555 at 1921.626 kb on - strand, within LRK53_RS08555 at 1921.626 kb on - strand, within LRK53_RS08555 at 1921.626 kb on - strand, within LRK53_RS08555 at 1921.679 kb on - strand, within LRK53_RS08555 at 1921.679 kb on - strand, within LRK53_RS08555 at 1921.680 kb on + strand, within LRK53_RS08555 at 1921.681 kb on - strand, within LRK53_RS08555 at 1921.681 kb on - strand, within LRK53_RS08555 at 1921.681 kb on - strand, within LRK53_RS08555 at 1921.681 kb on - strand, within LRK53_RS08555 at 1921.716 kb on + strand, within LRK53_RS08555 at 1921.716 kb on + strand, within LRK53_RS08555 at 1921.716 kb on + strand, within LRK53_RS08555 at 1921.717 kb on - strand, within LRK53_RS08555 at 1921.717 kb on - strand, within LRK53_RS08555 at 1921.734 kb on + strand, within LRK53_RS08555 at 1921.818 kb on + strand, within LRK53_RS08555 at 1921.818 kb on + strand, within LRK53_RS08555 at 1921.819 kb on - strand, within LRK53_RS08555 at 1921.893 kb on + strand, within LRK53_RS08555 at 1921.894 kb on - strand, within LRK53_RS08555 at 1922.191 kb on + strand at 1922.191 kb on + strand at 1922.191 kb on + strand at 1922.223 kb on + strand at 1922.250 kb on - strand at 1922.311 kb on + strand at 1922.311 kb on + strand at 1922.312 kb on - strand at 1922.312 kb on - strand at 1922.312 kb on - strand at 1922.312 kb on - strand at 1922.312 kb on - strand at 1922.445 kb on + strand, within LRK53_RS08560 at 1922.525 kb on + strand, within LRK53_RS08560 at 1922.549 kb on + strand, within LRK53_RS08560 at 1922.549 kb on + strand, within LRK53_RS08560 at 1922.549 kb on + strand, within LRK53_RS08560 at 1922.550 kb on - strand, within LRK53_RS08560 at 1922.550 kb on - strand, within LRK53_RS08560 at 1922.690 kb on + strand, within LRK53_RS08560 at 1922.691 kb on - strand, within LRK53_RS08560 at 1922.691 kb on - strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.842 kb on + strand, within LRK53_RS08560 at 1922.843 kb on - strand, within LRK53_RS08560 at 1922.843 kb on - strand, within LRK53_RS08560 at 1922.860 kb on + strand, within LRK53_RS08560 at 1922.860 kb on + strand, within LRK53_RS08560 at 1922.860 kb on + strand, within LRK53_RS08560 at 1922.860 kb on + strand, within LRK53_RS08560 at 1922.861 kb on - strand, within LRK53_RS08560 at 1922.861 kb on - strand, within LRK53_RS08560 at 1922.861 kb on - strand, within LRK53_RS08560 at 1922.861 kb on - strand, within LRK53_RS08560 at 1922.861 kb on - strand, within LRK53_RS08560 at 1923.044 kb on + strand at 1923.045 kb on - strand at 1923.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,920,512 + LRK53_RS08550 0.57 -0.3 1,920,617 + LRK53_RS08550 0.63 -0.1 1,920,617 + LRK53_RS08550 0.63 -0.7 1,920,617 + LRK53_RS08550 0.63 +0.2 1,920,617 + LRK53_RS08550 0.63 -0.4 1,920,617 + LRK53_RS08550 0.63 -0.4 1,920,618 - LRK53_RS08550 0.63 -1.1 1,920,618 - LRK53_RS08550 0.63 +1.0 1,920,618 - LRK53_RS08550 0.63 -0.8 1,920,764 + LRK53_RS08550 0.71 +0.5 1,920,764 + LRK53_RS08550 0.71 -0.9 1,920,764 + LRK53_RS08550 0.71 -0.3 1,920,764 + LRK53_RS08550 0.71 -1.6 1,920,765 - LRK53_RS08550 0.71 -0.4 1,920,867 - LRK53_RS08550 0.77 -1.4 1,920,867 - LRK53_RS08550 0.77 -0.7 1,921,037 + LRK53_RS08550 0.86 -0.2 1,921,037 + LRK53_RS08550 0.86 -1.7 1,921,037 + LRK53_RS08550 0.86 +0.1 1,921,037 + LRK53_RS08550 0.86 -1.7 1,921,037 + LRK53_RS08550 0.86 +1.3 1,921,037 + LRK53_RS08550 0.86 -0.2 1,921,038 - LRK53_RS08550 0.86 -0.8 1,921,038 - LRK53_RS08550 0.86 +0.9 1,921,038 - LRK53_RS08550 0.86 -0.1 1,921,038 - LRK53_RS08550 0.86 +0.2 1,921,038 - LRK53_RS08550 0.86 -0.4 1,921,038 - LRK53_RS08550 0.86 -0.0 1,921,038 - LRK53_RS08550 0.86 +0.3 1,921,038 - LRK53_RS08550 0.86 -1.0 1,921,038 - LRK53_RS08550 0.86 -1.0 1,921,039 + LRK53_RS08550 0.86 -0.8 1,921,384 - +1.1 1,921,384 - -0.4 1,921,384 - -0.6 1,921,476 + +0.2 1,921,476 + -1.7 1,921,476 + +1.6 1,921,491 + -1.4 1,921,491 + -1.5 1,921,491 + -0.1 1,921,492 - -0.1 1,921,492 - +2.5 1,921,492 - -0.5 1,921,492 - -0.5 1,921,493 + +0.9 1,921,493 + +1.1 1,921,493 + -0.2 1,921,493 + -0.7 1,921,493 + -0.1 1,921,493 + -1.1 1,921,493 + +0.3 1,921,493 + -1.3 1,921,493 + -0.9 1,921,493 + -0.0 1,921,494 - +0.9 1,921,494 - -0.5 1,921,494 - +0.2 1,921,494 - -0.4 1,921,494 - -0.4 1,921,494 - -1.1 1,921,494 - -0.4 1,921,494 - -1.4 1,921,494 - +0.0 1,921,494 - +0.9 1,921,551 + LRK53_RS08555 0.11 +0.5 1,921,551 + LRK53_RS08555 0.11 +0.2 1,921,551 + LRK53_RS08555 0.11 -0.1 1,921,551 + LRK53_RS08555 0.11 -0.4 1,921,551 + LRK53_RS08555 0.11 +0.7 1,921,551 + LRK53_RS08555 0.11 +0.0 1,921,551 + LRK53_RS08555 0.11 +1.9 1,921,551 + LRK53_RS08555 0.11 +0.3 1,921,551 + LRK53_RS08555 0.11 -1.4 1,921,552 - LRK53_RS08555 0.11 +0.0 1,921,552 - LRK53_RS08555 0.11 +2.3 1,921,552 - LRK53_RS08555 0.11 +0.9 1,921,552 - LRK53_RS08555 0.11 +0.6 1,921,552 - LRK53_RS08555 0.11 -0.4 1,921,552 - LRK53_RS08555 0.11 +1.6 1,921,552 - LRK53_RS08555 0.11 +0.9 1,921,552 - LRK53_RS08555 0.11 -2.8 1,921,552 - LRK53_RS08555 0.11 -2.1 1,921,552 - LRK53_RS08555 0.11 +0.5 1,921,552 - LRK53_RS08555 0.11 -0.7 1,921,552 - LRK53_RS08555 0.11 +0.7 1,921,560 + LRK53_RS08555 0.12 -1.2 1,921,560 + LRK53_RS08555 0.12 +0.3 1,921,560 + LRK53_RS08555 0.12 -1.1 1,921,560 + LRK53_RS08555 0.12 +0.7 1,921,560 + LRK53_RS08555 0.12 -2.4 1,921,560 + LRK53_RS08555 0.12 -2.3 1,921,561 - LRK53_RS08555 0.13 -0.9 1,921,561 - LRK53_RS08555 0.13 +0.4 1,921,561 - LRK53_RS08555 0.13 -0.3 1,921,561 - LRK53_RS08555 0.13 -2.3 1,921,561 - LRK53_RS08555 0.13 +0.6 1,921,561 - LRK53_RS08555 0.13 +1.2 1,921,578 + LRK53_RS08555 0.15 +0.7 1,921,578 + LRK53_RS08555 0.15 +0.5 1,921,578 + LRK53_RS08555 0.15 -0.5 1,921,578 + LRK53_RS08555 0.15 -1.7 1,921,578 + LRK53_RS08555 0.15 -1.1 1,921,578 + LRK53_RS08555 0.15 +0.0 1,921,578 + LRK53_RS08555 0.15 -0.3 1,921,578 + LRK53_RS08555 0.15 -0.2 1,921,578 + LRK53_RS08555 0.15 +0.7 1,921,578 + LRK53_RS08555 0.15 -0.3 1,921,578 + LRK53_RS08555 0.15 -0.3 1,921,579 - LRK53_RS08555 0.15 -0.6 1,921,579 - LRK53_RS08555 0.15 -1.1 1,921,579 - LRK53_RS08555 0.15 -0.1 1,921,579 - LRK53_RS08555 0.15 -0.2 1,921,579 - LRK53_RS08555 0.15 -0.3 1,921,579 - LRK53_RS08555 0.15 +0.5 1,921,579 - LRK53_RS08555 0.15 +0.2 1,921,579 - LRK53_RS08555 0.15 -2.1 1,921,590 + LRK53_RS08555 0.17 -0.6 1,921,590 + LRK53_RS08555 0.17 +0.5 1,921,591 - LRK53_RS08555 0.17 +0.3 1,921,591 - LRK53_RS08555 0.17 +0.5 1,921,605 + LRK53_RS08555 0.19 -1.8 1,921,625 + LRK53_RS08555 0.22 -1.7 1,921,626 - LRK53_RS08555 0.22 -0.4 1,921,626 - LRK53_RS08555 0.22 -0.5 1,921,626 - LRK53_RS08555 0.22 +2.5 1,921,679 - LRK53_RS08555 0.30 -2.1 1,921,679 - LRK53_RS08555 0.30 -0.7 1,921,680 + LRK53_RS08555 0.30 -0.7 1,921,681 - LRK53_RS08555 0.30 +0.9 1,921,681 - LRK53_RS08555 0.30 -0.3 1,921,681 - LRK53_RS08555 0.30 -0.0 1,921,681 - LRK53_RS08555 0.30 +0.5 1,921,716 + LRK53_RS08555 0.35 -1.4 1,921,716 + LRK53_RS08555 0.35 -0.4 1,921,716 + LRK53_RS08555 0.35 -0.7 1,921,717 - LRK53_RS08555 0.36 -0.4 1,921,717 - LRK53_RS08555 0.36 -1.1 1,921,734 + LRK53_RS08555 0.38 +0.4 1,921,818 + LRK53_RS08555 0.50 +0.2 1,921,818 + LRK53_RS08555 0.50 +1.1 1,921,819 - LRK53_RS08555 0.51 +1.4 1,921,893 + LRK53_RS08555 0.61 -1.1 1,921,894 - LRK53_RS08555 0.62 -0.6 1,922,191 + -0.9 1,922,191 + +0.4 1,922,191 + +0.7 1,922,223 + -0.5 1,922,250 - -2.1 1,922,311 + -0.1 1,922,311 + +0.9 1,922,312 - +0.5 1,922,312 - -2.1 1,922,312 - -0.6 1,922,312 - -0.6 1,922,312 - +0.9 1,922,445 + LRK53_RS08560 0.20 -2.7 1,922,525 + LRK53_RS08560 0.30 +1.1 1,922,549 + LRK53_RS08560 0.33 -1.1 1,922,549 + LRK53_RS08560 0.33 +0.4 1,922,549 + LRK53_RS08560 0.33 -0.3 1,922,550 - LRK53_RS08560 0.33 +1.1 1,922,550 - LRK53_RS08560 0.33 +1.1 1,922,690 + LRK53_RS08560 0.50 +2.7 1,922,691 - LRK53_RS08560 0.50 -0.4 1,922,691 - LRK53_RS08560 0.50 -0.6 1,922,842 + LRK53_RS08560 0.69 -1.4 1,922,842 + LRK53_RS08560 0.69 +0.2 1,922,842 + LRK53_RS08560 0.69 -0.3 1,922,842 + LRK53_RS08560 0.69 -0.1 1,922,842 + LRK53_RS08560 0.69 +1.2 1,922,842 + LRK53_RS08560 0.69 +1.6 1,922,843 - LRK53_RS08560 0.69 +0.2 1,922,843 - LRK53_RS08560 0.69 +0.1 1,922,860 + LRK53_RS08560 0.71 -0.6 1,922,860 + LRK53_RS08560 0.71 -0.7 1,922,860 + LRK53_RS08560 0.71 -2.1 1,922,860 + LRK53_RS08560 0.71 -0.3 1,922,861 - LRK53_RS08560 0.71 -0.5 1,922,861 - LRK53_RS08560 0.71 -0.1 1,922,861 - LRK53_RS08560 0.71 +0.7 1,922,861 - LRK53_RS08560 0.71 +0.5 1,922,861 - LRK53_RS08560 0.71 -0.2 1,923,044 + -0.1 1,923,045 - -0.1 1,923,045 - +0.5
Or see this region's nucleotide sequence