Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07025

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07020 and LRK53_RS07025 overlap by 4 nucleotidesLRK53_RS07025 and LRK53_RS07030 are separated by 5 nucleotides LRK53_RS07020: LRK53_RS07020 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,579,825 to 1,580,793 _RS07020 LRK53_RS07025: LRK53_RS07025 - ABC transporter ATP-binding protein, at 1,580,790 to 1,581,539 _RS07025 LRK53_RS07030: LRK53_RS07030 - ABC transporter permease, at 1,581,545 to 1,582,675 _RS07030 Position (kb) 1580 1581 1582Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1579.955 kb on - strand, within LRK53_RS07020at 1579.955 kb on - strand, within LRK53_RS07020at 1579.988 kb on + strand, within LRK53_RS07020at 1579.988 kb on + strand, within LRK53_RS07020at 1579.988 kb on + strand, within LRK53_RS07020at 1579.989 kb on - strand, within LRK53_RS07020at 1579.989 kb on - strand, within LRK53_RS07020at 1580.847 kb on + strandat 1580.847 kb on + strandat 1580.848 kb on - strandat 1580.848 kb on - strandat 1580.848 kb on - strandat 1580.848 kb on - strandat 1580.848 kb on - strandat 1580.924 kb on + strand, within LRK53_RS07025at 1580.924 kb on + strand, within LRK53_RS07025at 1580.937 kb on - strand, within LRK53_RS07025at 1581.547 kb on - strandat 1581.547 kb on - strandat 1581.939 kb on + strand, within LRK53_RS07030at 1581.940 kb on - strand, within LRK53_RS07030at 1581.982 kb on + strand, within LRK53_RS07030at 1581.982 kb on + strand, within LRK53_RS07030at 1581.982 kb on + strand, within LRK53_RS07030at 1581.983 kb on - strand, within LRK53_RS07030at 1581.984 kb on + strand, within LRK53_RS07030at 1581.984 kb on + strand, within LRK53_RS07030at 1581.984 kb on + strand, within LRK53_RS07030at 1581.984 kb on + strand, within LRK53_RS07030at 1581.985 kb on - strand, within LRK53_RS07030at 1581.985 kb on - strand, within LRK53_RS07030at 1581.985 kb on - strand, within LRK53_RS07030at 1581.985 kb on - strand, within LRK53_RS07030at 1582.065 kb on + strand, within LRK53_RS07030at 1582.065 kb on + strand, within LRK53_RS07030at 1582.065 kb on + strand, within LRK53_RS07030at 1582.065 kb on + strand, within LRK53_RS07030at 1582.066 kb on - strand, within LRK53_RS07030at 1582.066 kb on - strand, within LRK53_RS07030at 1582.066 kb on - strand, within LRK53_RS07030at 1582.179 kb on - strand, within LRK53_RS07030at 1582.404 kb on + strand, within LRK53_RS07030at 1582.404 kb on + strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.405 kb on - strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.511 kb on + strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.512 kb on - strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.536 kb on + strand, within LRK53_RS07030at 1582.537 kb on - strand, within LRK53_RS07030at 1582.537 kb on - strand, within LRK53_RS07030

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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1,579,955 - LRK53_RS07020 0.13 -0.7
1,579,955 - LRK53_RS07020 0.13 -1.4
1,579,988 + LRK53_RS07020 0.17 -1.6
1,579,988 + LRK53_RS07020 0.17 -0.1
1,579,988 + LRK53_RS07020 0.17 -0.1
1,579,989 - LRK53_RS07020 0.17 +1.4
1,579,989 - LRK53_RS07020 0.17 +0.7
1,580,847 + -0.6
1,580,847 + +0.5
1,580,848 - +1.0
1,580,848 - -0.2
1,580,848 - +1.4
1,580,848 - -2.4
1,580,848 - -3.1
1,580,924 + LRK53_RS07025 0.18 -1.4
1,580,924 + LRK53_RS07025 0.18 -0.6
1,580,937 - LRK53_RS07025 0.20 -1.1
1,581,547 - +0.9
1,581,547 - -0.1
1,581,939 + LRK53_RS07030 0.35 +2.3
1,581,940 - LRK53_RS07030 0.35 +3.8
1,581,982 + LRK53_RS07030 0.39 -0.8
1,581,982 + LRK53_RS07030 0.39 -2.2
1,581,982 + LRK53_RS07030 0.39 +0.2
1,581,983 - LRK53_RS07030 0.39 -1.2
1,581,984 + LRK53_RS07030 0.39 +1.2
1,581,984 + LRK53_RS07030 0.39 +0.2
1,581,984 + LRK53_RS07030 0.39 -0.5
1,581,984 + LRK53_RS07030 0.39 -1.4
1,581,985 - LRK53_RS07030 0.39 -2.6
1,581,985 - LRK53_RS07030 0.39 -1.1
1,581,985 - LRK53_RS07030 0.39 -3.1
1,581,985 - LRK53_RS07030 0.39 -0.6
1,582,065 + LRK53_RS07030 0.46 -0.7
1,582,065 + LRK53_RS07030 0.46 +0.6
1,582,065 + LRK53_RS07030 0.46 -1.5
1,582,065 + LRK53_RS07030 0.46 -0.1
1,582,066 - LRK53_RS07030 0.46 +3.5
1,582,066 - LRK53_RS07030 0.46 -0.8
1,582,066 - LRK53_RS07030 0.46 -1.1
1,582,179 - LRK53_RS07030 0.56 +0.1
1,582,404 + LRK53_RS07030 0.76 -0.6
1,582,404 + LRK53_RS07030 0.76 +0.9
1,582,405 - LRK53_RS07030 0.76 -0.1
1,582,405 - LRK53_RS07030 0.76 +0.2
1,582,405 - LRK53_RS07030 0.76 -1.6
1,582,405 - LRK53_RS07030 0.76 +0.1
1,582,405 - LRK53_RS07030 0.76 +0.9
1,582,405 - LRK53_RS07030 0.76 -0.6
1,582,511 + LRK53_RS07030 0.85 -1.1
1,582,511 + LRK53_RS07030 0.85 -1.1
1,582,511 + LRK53_RS07030 0.85 -0.6
1,582,511 + LRK53_RS07030 0.85 -0.1
1,582,511 + LRK53_RS07030 0.85 -0.1
1,582,511 + LRK53_RS07030 0.85 +3.3
1,582,512 - LRK53_RS07030 0.85 +0.1
1,582,512 - LRK53_RS07030 0.85 -0.5
1,582,512 - LRK53_RS07030 0.85 -0.3
1,582,512 - LRK53_RS07030 0.85 -0.2
1,582,512 - LRK53_RS07030 0.85 -1.2
1,582,512 - LRK53_RS07030 0.85 +1.9
1,582,512 - LRK53_RS07030 0.85 -0.6
1,582,536 + LRK53_RS07030 0.88 -0.1
1,582,536 + LRK53_RS07030 0.88 -1.4
1,582,536 + LRK53_RS07030 0.88 +0.9
1,582,536 + LRK53_RS07030 0.88 -1.4
1,582,536 + LRK53_RS07030 0.88 +0.4
1,582,536 + LRK53_RS07030 0.88 +0.9
1,582,537 - LRK53_RS07030 0.88 -0.6
1,582,537 - LRK53_RS07030 0.88 -0.9

Or see this region's nucleotide sequence