Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05615

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05610 and LRK53_RS05615 are separated by 1 nucleotidesLRK53_RS05615 and LRK53_RS05620 are separated by 192 nucleotides LRK53_RS05610: LRK53_RS05610 - uroporphyrinogen decarboxylase, at 1,307,989 to 1,309,062 _RS05610 LRK53_RS05615: LRK53_RS05615 - WGR domain-containing protein, at 1,309,064 to 1,309,324 _RS05615 LRK53_RS05620: LRK53_RS05620 - 3-dehydroquinate synthase, at 1,309,517 to 1,310,617 _RS05620 Position (kb) 1309 1310Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1309.074 kb on + strandat 1309.074 kb on + strandat 1309.075 kb on - strandat 1309.075 kb on - strandat 1309.227 kb on + strand, within LRK53_RS05615at 1309.275 kb on + strand, within LRK53_RS05615at 1309.275 kb on + strand, within LRK53_RS05615at 1309.276 kb on - strand, within LRK53_RS05615at 1309.276 kb on - strand, within LRK53_RS05615at 1309.276 kb on - strand, within LRK53_RS05615at 1309.291 kb on + strand, within LRK53_RS05615at 1309.291 kb on + strand, within LRK53_RS05615at 1309.314 kb on + strandat 1309.314 kb on + strandat 1309.314 kb on + strandat 1309.314 kb on + strandat 1309.314 kb on + strandat 1309.314 kb on + strandat 1309.315 kb on - strandat 1309.315 kb on - strandat 1309.315 kb on - strandat 1309.315 kb on - strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.374 kb on + strandat 1309.375 kb on - strandat 1309.375 kb on - strandat 1309.375 kb on - strandat 1309.376 kb on + strandat 1309.376 kb on + strandat 1309.376 kb on + strandat 1309.376 kb on + strandat 1309.376 kb on + strandat 1309.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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1,309,074 + -0.1
1,309,074 + +0.2
1,309,075 - +0.2
1,309,075 - -1.7
1,309,227 + LRK53_RS05615 0.62 -0.2
1,309,275 + LRK53_RS05615 0.81 -0.9
1,309,275 + LRK53_RS05615 0.81 -0.2
1,309,276 - LRK53_RS05615 0.81 -1.3
1,309,276 - LRK53_RS05615 0.81 -0.9
1,309,276 - LRK53_RS05615 0.81 -0.9
1,309,291 + LRK53_RS05615 0.87 -1.1
1,309,291 + LRK53_RS05615 0.87 +0.6
1,309,314 + -0.7
1,309,314 + +1.9
1,309,314 + -0.3
1,309,314 + -1.4
1,309,314 + +0.2
1,309,314 + -1.8
1,309,315 - -2.8
1,309,315 - -2.3
1,309,315 - -0.8
1,309,315 - -0.0
1,309,374 + +0.7
1,309,374 + -1.5
1,309,374 + +0.9
1,309,374 + +1.5
1,309,374 + +0.3
1,309,374 + -1.9
1,309,374 + -1.7
1,309,374 + -1.0
1,309,375 - +0.2
1,309,375 - -0.7
1,309,375 - -0.5
1,309,376 + -0.8
1,309,376 + +0.2
1,309,376 + +0.5
1,309,376 + +1.2
1,309,376 + -1.0
1,309,377 - -0.9

Or see this region's nucleotide sequence