Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05555

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05550 and LRK53_RS05555 are separated by 10 nucleotidesLRK53_RS05555 and LRK53_RS05560 overlap by 4 nucleotides LRK53_RS05550: LRK53_RS05550 - SPFH/Band 7/PHB domain protein, at 1,296,108 to 1,297,052 _RS05550 LRK53_RS05555: LRK53_RS05555 - NfeD family protein, at 1,297,063 to 1,297,509 _RS05555 LRK53_RS05560: LRK53_RS05560 - threonine/serine exporter family protein, at 1,297,506 to 1,298,786 _RS05560 Position (kb) 1297 1298Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1296.072 kb on + strandat 1296.072 kb on + strandat 1296.072 kb on + strandat 1296.072 kb on + strandat 1296.072 kb on + strandat 1296.072 kb on + strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.073 kb on - strandat 1296.074 kb on + strandat 1296.074 kb on + strandat 1296.074 kb on + strandat 1296.075 kb on - strandat 1296.075 kb on - strandat 1296.075 kb on - strandat 1296.075 kb on - strandat 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.219 kb on + strand, within LRK53_RS05550at 1296.220 kb on - strand, within LRK53_RS05550at 1296.220 kb on - strand, within LRK53_RS05550at 1296.220 kb on - strand, within LRK53_RS05550at 1296.220 kb on - strand, within LRK53_RS05550at 1296.220 kb on - strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.264 kb on + strand, within LRK53_RS05550at 1296.265 kb on - strand, within LRK53_RS05550at 1296.265 kb on - strand, within LRK53_RS05550at 1296.265 kb on - strand, within LRK53_RS05550at 1296.265 kb on - strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.295 kb on + strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.296 kb on - strand, within LRK53_RS05550at 1296.375 kb on + strand, within LRK53_RS05550at 1296.375 kb on + strand, within LRK53_RS05550at 1296.375 kb on + strand, within LRK53_RS05550at 1296.375 kb on + strand, within LRK53_RS05550at 1296.376 kb on - strand, within LRK53_RS05550at 1296.376 kb on - strand, within LRK53_RS05550at 1296.376 kb on - strand, within LRK53_RS05550at 1296.376 kb on - strand, within LRK53_RS05550at 1296.405 kb on + strand, within LRK53_RS05550at 1296.405 kb on + strand, within LRK53_RS05550at 1296.405 kb on + strand, within LRK53_RS05550at 1296.406 kb on - strand, within LRK53_RS05550at 1296.406 kb on - strand, within LRK53_RS05550at 1296.580 kb on + strand, within LRK53_RS05550at 1296.581 kb on - strand, within LRK53_RS05550at 1296.581 kb on - strand, within LRK53_RS05550at 1296.581 kb on - strand, within LRK53_RS05550at 1296.665 kb on + strand, within LRK53_RS05550at 1296.666 kb on - strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.867 kb on + strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.868 kb on - strand, within LRK53_RS05550at 1296.885 kb on + strand, within LRK53_RS05550at 1296.885 kb on + strand, within LRK53_RS05550at 1296.885 kb on + strand, within LRK53_RS05550at 1296.885 kb on + strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1296.886 kb on - strand, within LRK53_RS05550at 1297.084 kb on + strandat 1297.084 kb on + strandat 1297.084 kb on + strandat 1297.085 kb on - strandat 1297.085 kb on - strandat 1297.085 kb on - strandat 1297.141 kb on + strand, within LRK53_RS05555at 1297.268 kb on - strand, within LRK53_RS05555at 1297.357 kb on + strand, within LRK53_RS05555at 1297.751 kb on + strand, within LRK53_RS05560at 1297.752 kb on - strand, within LRK53_RS05560at 1297.752 kb on - strand, within LRK53_RS05560at 1297.927 kb on - strand, within LRK53_RS05560at 1297.927 kb on - strand, within LRK53_RS05560at 1298.087 kb on - strand, within LRK53_RS05560at 1298.147 kb on - strand, within LRK53_RS05560

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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1,296,072 + +0.7
1,296,072 + -0.1
1,296,072 + -0.5
1,296,072 + -1.3
1,296,072 + -0.6
1,296,072 + -0.2
1,296,073 - +0.3
1,296,073 - +0.5
1,296,073 - +0.4
1,296,073 - +0.3
1,296,073 - +1.6
1,296,073 - -0.3
1,296,073 - -0.3
1,296,074 + +0.9
1,296,074 + -0.1
1,296,074 + +0.1
1,296,075 - -0.4
1,296,075 - -2.4
1,296,075 - +0.2
1,296,075 - -1.3
1,296,219 + LRK53_RS05550 0.12 -1.6
1,296,219 + LRK53_RS05550 0.12 -1.9
1,296,219 + LRK53_RS05550 0.12 -0.1
1,296,219 + LRK53_RS05550 0.12 +1.4
1,296,219 + LRK53_RS05550 0.12 -0.1
1,296,219 + LRK53_RS05550 0.12 +0.2
1,296,219 + LRK53_RS05550 0.12 -0.1
1,296,219 + LRK53_RS05550 0.12 -2.3
1,296,220 - LRK53_RS05550 0.12 -0.1
1,296,220 - LRK53_RS05550 0.12 -1.1
1,296,220 - LRK53_RS05550 0.12 +0.9
1,296,220 - LRK53_RS05550 0.12 -0.7
1,296,220 - LRK53_RS05550 0.12 -0.3
1,296,264 + LRK53_RS05550 0.17 -1.5
1,296,264 + LRK53_RS05550 0.17 -1.7
1,296,264 + LRK53_RS05550 0.17 -0.1
1,296,264 + LRK53_RS05550 0.17 +3.9
1,296,264 + LRK53_RS05550 0.17 +0.2
1,296,264 + LRK53_RS05550 0.17 +1.1
1,296,264 + LRK53_RS05550 0.17 -0.5
1,296,264 + LRK53_RS05550 0.17 -1.4
1,296,265 - LRK53_RS05550 0.17 -0.3
1,296,265 - LRK53_RS05550 0.17 +1.9
1,296,265 - LRK53_RS05550 0.17 +0.7
1,296,265 - LRK53_RS05550 0.17 -0.1
1,296,295 + LRK53_RS05550 0.20 -1.7
1,296,295 + LRK53_RS05550 0.20 -0.4
1,296,295 + LRK53_RS05550 0.20 +0.3
1,296,295 + LRK53_RS05550 0.20 -1.9
1,296,295 + LRK53_RS05550 0.20 -0.5
1,296,295 + LRK53_RS05550 0.20 -0.5
1,296,295 + LRK53_RS05550 0.20 -1.4
1,296,295 + LRK53_RS05550 0.20 -1.1
1,296,295 + LRK53_RS05550 0.20 +0.9
1,296,295 + LRK53_RS05550 0.20 +0.5
1,296,295 + LRK53_RS05550 0.20 +2.3
1,296,295 + LRK53_RS05550 0.20 +0.9
1,296,295 + LRK53_RS05550 0.20 +0.2
1,296,295 + LRK53_RS05550 0.20 +0.1
1,296,295 + LRK53_RS05550 0.20 +0.3
1,296,296 - LRK53_RS05550 0.20 -0.1
1,296,296 - LRK53_RS05550 0.20 +0.9
1,296,296 - LRK53_RS05550 0.20 +0.5
1,296,296 - LRK53_RS05550 0.20 +0.6
1,296,296 - LRK53_RS05550 0.20 +0.1
1,296,296 - LRK53_RS05550 0.20 +0.2
1,296,296 - LRK53_RS05550 0.20 +1.5
1,296,296 - LRK53_RS05550 0.20 -0.8
1,296,296 - LRK53_RS05550 0.20 -0.8
1,296,296 - LRK53_RS05550 0.20 +0.9
1,296,296 - LRK53_RS05550 0.20 +1.9
1,296,296 - LRK53_RS05550 0.20 -0.4
1,296,296 - LRK53_RS05550 0.20 -1.3
1,296,375 + LRK53_RS05550 0.28 -0.3
1,296,375 + LRK53_RS05550 0.28 -0.4
1,296,375 + LRK53_RS05550 0.28 -0.1
1,296,375 + LRK53_RS05550 0.28 +0.7
1,296,376 - LRK53_RS05550 0.28 -0.4
1,296,376 - LRK53_RS05550 0.28 +0.4
1,296,376 - LRK53_RS05550 0.28 -0.8
1,296,376 - LRK53_RS05550 0.28 -0.9
1,296,405 + LRK53_RS05550 0.31 -0.4
1,296,405 + LRK53_RS05550 0.31 +0.9
1,296,405 + LRK53_RS05550 0.31 -0.3
1,296,406 - LRK53_RS05550 0.32 +1.3
1,296,406 - LRK53_RS05550 0.32 +1.5
1,296,580 + LRK53_RS05550 0.50 +1.9
1,296,581 - LRK53_RS05550 0.50 +1.3
1,296,581 - LRK53_RS05550 0.50 -0.5
1,296,581 - LRK53_RS05550 0.50 -0.1
1,296,665 + LRK53_RS05550 0.59 +1.4
1,296,666 - LRK53_RS05550 0.59 -0.4
1,296,867 + LRK53_RS05550 0.80 +0.7
1,296,867 + LRK53_RS05550 0.80 -1.4
1,296,867 + LRK53_RS05550 0.80 -0.1
1,296,867 + LRK53_RS05550 0.80 -0.1
1,296,867 + LRK53_RS05550 0.80 -0.6
1,296,867 + LRK53_RS05550 0.80 -1.1
1,296,867 + LRK53_RS05550 0.80 +0.7
1,296,867 + LRK53_RS05550 0.80 -2.3
1,296,867 + LRK53_RS05550 0.80 -0.8
1,296,867 + LRK53_RS05550 0.80 +2.9
1,296,868 - LRK53_RS05550 0.80 -0.1
1,296,868 - LRK53_RS05550 0.80 +1.0
1,296,868 - LRK53_RS05550 0.80 +1.9
1,296,868 - LRK53_RS05550 0.80 -1.6
1,296,868 - LRK53_RS05550 0.80 +1.4
1,296,868 - LRK53_RS05550 0.80 -0.1
1,296,885 + LRK53_RS05550 0.82 +1.1
1,296,885 + LRK53_RS05550 0.82 -1.3
1,296,885 + LRK53_RS05550 0.82 -0.7
1,296,885 + LRK53_RS05550 0.82 +0.3
1,296,886 - LRK53_RS05550 0.82 +1.5
1,296,886 - LRK53_RS05550 0.82 +0.3
1,296,886 - LRK53_RS05550 0.82 -0.1
1,296,886 - LRK53_RS05550 0.82 -0.7
1,296,886 - LRK53_RS05550 0.82 -1.1
1,296,886 - LRK53_RS05550 0.82 -2.1
1,296,886 - LRK53_RS05550 0.82 -0.7
1,296,886 - LRK53_RS05550 0.82 -1.4
1,297,084 + -0.4
1,297,084 + +0.2
1,297,084 + -0.3
1,297,085 - -0.7
1,297,085 - -0.1
1,297,085 - +1.3
1,297,141 + LRK53_RS05555 0.17 -1.4
1,297,268 - LRK53_RS05555 0.46 -1.8
1,297,357 + LRK53_RS05555 0.66 -0.1
1,297,751 + LRK53_RS05560 0.19 +2.1
1,297,752 - LRK53_RS05560 0.19 -2.1
1,297,752 - LRK53_RS05560 0.19 +0.3
1,297,927 - LRK53_RS05560 0.33 +1.2
1,297,927 - LRK53_RS05560 0.33 -1.3
1,298,087 - LRK53_RS05560 0.45 +0.6
1,298,147 - LRK53_RS05560 0.50 +1.9

Or see this region's nucleotide sequence