Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05410

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05405 and LRK53_RS05410 are separated by 144 nucleotidesLRK53_RS05410 and LRK53_RS05415 are separated by 344 nucleotides LRK53_RS05405: LRK53_RS05405 - riboflavin synthase, at 1,261,198 to 1,261,839 _RS05405 LRK53_RS05410: LRK53_RS05410 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,261,984 to 1,263,075 _RS05410 LRK53_RS05415: LRK53_RS05415 - IS110 family transposase, at 1,263,420 to 1,264,442 _RS05415 Position (kb) 1261 1262 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1261.055 kb on - strandat 1261.114 kb on + strandat 1261.114 kb on + strandat 1261.114 kb on + strandat 1261.114 kb on + strandat 1261.114 kb on + strandat 1261.115 kb on - strandat 1261.115 kb on - strandat 1261.137 kb on + strandat 1261.137 kb on + strandat 1261.137 kb on + strandat 1261.137 kb on + strandat 1261.899 kb on + strandat 1261.899 kb on + strandat 1261.899 kb on + strandat 1261.900 kb on - strandat 1261.900 kb on - strandat 1261.900 kb on - strandat 1261.900 kb on - strandat 1261.900 kb on - strandat 1261.900 kb on - strandat 1261.976 kb on + strandat 1261.976 kb on + strandat 1261.976 kb on + strandat 1261.977 kb on - strandat 1261.977 kb on - strandat 1261.995 kb on + strandat 1262.659 kb on + strand, within LRK53_RS05410at 1262.689 kb on + strand, within LRK53_RS05410at 1262.689 kb on + strand, within LRK53_RS05410at 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.067 kb on + strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.068 kb on - strandat 1263.073 kb on + strandat 1263.073 kb on + strandat 1263.074 kb on - strandat 1263.074 kb on - strandat 1263.074 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strandat 1263.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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1,261,055 - +0.9
1,261,114 + +0.4
1,261,114 + +3.2
1,261,114 + -0.1
1,261,114 + +2.7
1,261,114 + +0.0
1,261,115 - -1.0
1,261,115 - -3.1
1,261,137 + -0.3
1,261,137 + +0.3
1,261,137 + +0.6
1,261,137 + +0.3
1,261,899 + +2.7
1,261,899 + -3.5
1,261,899 + -0.5
1,261,900 - -0.1
1,261,900 - -0.9
1,261,900 - -0.3
1,261,900 - -0.7
1,261,900 - -0.3
1,261,900 - +1.4
1,261,976 + +0.3
1,261,976 + +0.9
1,261,976 + -0.2
1,261,977 - -2.4
1,261,977 - -1.3
1,261,995 + -2.4
1,262,659 + LRK53_RS05410 0.62 -1.1
1,262,689 + LRK53_RS05410 0.65 -0.9
1,262,689 + LRK53_RS05410 0.65 -1.3
1,263,067 + -0.4
1,263,067 + +0.4
1,263,067 + -0.8
1,263,067 + +0.4
1,263,067 + +0.3
1,263,067 + -0.5
1,263,067 + +0.9
1,263,068 - -1.5
1,263,068 - +0.7
1,263,068 - -1.9
1,263,068 - -0.4
1,263,068 - -0.3
1,263,068 - -2.5
1,263,068 - -1.3
1,263,073 + -0.7
1,263,073 + +0.6
1,263,074 - -1.1
1,263,074 - -0.9
1,263,074 - -1.6
1,263,093 - +0.3
1,263,093 - +0.2
1,263,093 - -0.4
1,263,093 - -0.1
1,263,093 - -0.4
1,263,093 - +2.5
1,263,093 - -0.8
1,263,093 - -1.0
1,263,093 - -0.4
1,263,093 - -2.1
1,263,093 - -0.1
1,263,093 - -0.6
1,263,093 - -0.3
1,263,093 - +0.9
1,263,093 - +0.0

Or see this region's nucleotide sequence