Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05405 and LRK53_RS05410 are separated by 144 nucleotides LRK53_RS05410 and LRK53_RS05415 are separated by 344 nucleotides
LRK53_RS05405: LRK53_RS05405 - riboflavin synthase, at 1,261,198 to 1,261,839
_RS05405
LRK53_RS05410: LRK53_RS05410 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,261,984 to 1,263,075
_RS05410
LRK53_RS05415: LRK53_RS05415 - IS110 family transposase, at 1,263,420 to 1,264,442
_RS05415
Position (kb)
1261
1262
1263
1264 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1261.055 kb on - strand at 1261.114 kb on + strand at 1261.114 kb on + strand at 1261.114 kb on + strand at 1261.114 kb on + strand at 1261.114 kb on + strand at 1261.115 kb on - strand at 1261.115 kb on - strand at 1261.137 kb on + strand at 1261.137 kb on + strand at 1261.137 kb on + strand at 1261.137 kb on + strand at 1261.899 kb on + strand at 1261.899 kb on + strand at 1261.899 kb on + strand at 1261.900 kb on - strand at 1261.900 kb on - strand at 1261.900 kb on - strand at 1261.900 kb on - strand at 1261.900 kb on - strand at 1261.900 kb on - strand at 1261.976 kb on + strand at 1261.976 kb on + strand at 1261.976 kb on + strand at 1261.977 kb on - strand at 1261.977 kb on - strand at 1261.995 kb on + strand at 1262.659 kb on + strand, within LRK53_RS05410 at 1262.689 kb on + strand, within LRK53_RS05410 at 1262.689 kb on + strand, within LRK53_RS05410 at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.067 kb on + strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.068 kb on - strand at 1263.073 kb on + strand at 1263.073 kb on + strand at 1263.074 kb on - strand at 1263.074 kb on - strand at 1263.074 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand at 1263.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 1,261,055 - +0.9 1,261,114 + +0.4 1,261,114 + +3.2 1,261,114 + -0.1 1,261,114 + +2.7 1,261,114 + +0.0 1,261,115 - -1.0 1,261,115 - -3.1 1,261,137 + -0.3 1,261,137 + +0.3 1,261,137 + +0.6 1,261,137 + +0.3 1,261,899 + +2.7 1,261,899 + -3.5 1,261,899 + -0.5 1,261,900 - -0.1 1,261,900 - -0.9 1,261,900 - -0.3 1,261,900 - -0.7 1,261,900 - -0.3 1,261,900 - +1.4 1,261,976 + +0.3 1,261,976 + +0.9 1,261,976 + -0.2 1,261,977 - -2.4 1,261,977 - -1.3 1,261,995 + -2.4 1,262,659 + LRK53_RS05410 0.62 -1.1 1,262,689 + LRK53_RS05410 0.65 -0.9 1,262,689 + LRK53_RS05410 0.65 -1.3 1,263,067 + -0.4 1,263,067 + +0.4 1,263,067 + -0.8 1,263,067 + +0.4 1,263,067 + +0.3 1,263,067 + -0.5 1,263,067 + +0.9 1,263,068 - -1.5 1,263,068 - +0.7 1,263,068 - -1.9 1,263,068 - -0.4 1,263,068 - -0.3 1,263,068 - -2.5 1,263,068 - -1.3 1,263,073 + -0.7 1,263,073 + +0.6 1,263,074 - -1.1 1,263,074 - -0.9 1,263,074 - -1.6 1,263,093 - +0.3 1,263,093 - +0.2 1,263,093 - -0.4 1,263,093 - -0.1 1,263,093 - -0.4 1,263,093 - +2.5 1,263,093 - -0.8 1,263,093 - -1.0 1,263,093 - -0.4 1,263,093 - -2.1 1,263,093 - -0.1 1,263,093 - -0.6 1,263,093 - -0.3 1,263,093 - +0.9 1,263,093 - +0.0
Or see this region's nucleotide sequence