Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04125

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04115 and LRK53_RS04120 are separated by 62 nucleotidesLRK53_RS04120 and LRK53_RS04125 are separated by 266 nucleotidesLRK53_RS04125 and LRK53_RS04130 are separated by 136 nucleotidesLRK53_RS04130 and LRK53_RS04135 are separated by 49 nucleotides LRK53_RS04115: LRK53_RS04115 - hypothetical protein, at 965,215 to 965,949 _RS04115 LRK53_RS04120: LRK53_RS04120 - DUF6491 family protein, at 966,012 to 966,464 _RS04120 LRK53_RS04125: LRK53_RS04125 - ferritin-like domain-containing protein, at 966,731 to 967,552 _RS04125 LRK53_RS04130: LRK53_RS04130 - universal stress protein, at 967,689 to 968,105 _RS04130 LRK53_RS04135: LRK53_RS04135 - glycine zipper 2TM domain-containing protein, at 968,155 to 968,325 _RS04135 Position (kb) 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 965.838 kb on + strand, within LRK53_RS04115at 965.838 kb on + strand, within LRK53_RS04115at 965.838 kb on + strand, within LRK53_RS04115at 965.839 kb on - strand, within LRK53_RS04115at 965.888 kb on - strandat 965.888 kb on - strandat 965.888 kb on - strandat 965.888 kb on - strandat 965.947 kb on + strandat 965.947 kb on + strandat 965.947 kb on + strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.955 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.166 kb on - strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 967.047 kb on + strand, within LRK53_RS04125at 967.056 kb on + strand, within LRK53_RS04125at 967.056 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.242 kb on + strand, within LRK53_RS04125at 967.242 kb on + strand, within LRK53_RS04125at 967.243 kb on - strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.414 kb on - strand, within LRK53_RS04125at 967.568 kb on - strandat 967.638 kb on + strandat 967.638 kb on + strandat 967.638 kb on + strandat 967.638 kb on + strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.639 kb on - strandat 967.782 kb on - strand, within LRK53_RS04130at 967.782 kb on - strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.001 kb on + strand, within LRK53_RS04130at 968.002 kb on - strand, within LRK53_RS04130at 968.002 kb on - strand, within LRK53_RS04130at 968.002 kb on - strand, within LRK53_RS04130at 968.081 kb on - strandat 968.081 kb on - strandat 968.081 kb on - strandat 968.095 kb on + strandat 968.095 kb on + strandat 968.095 kb on + strandat 968.095 kb on + strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.096 kb on - strandat 968.188 kb on - strand, within LRK53_RS04135at 968.234 kb on + strand, within LRK53_RS04135at 968.443 kb on - strandat 968.552 kb on + strandat 968.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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965,838 + LRK53_RS04115 0.85 -1.0
965,838 + LRK53_RS04115 0.85 -0.7
965,838 + LRK53_RS04115 0.85 -0.0
965,839 - LRK53_RS04115 0.85 -1.1
965,888 - -1.5
965,888 - -0.1
965,888 - -0.6
965,888 - +0.2
965,947 + -2.2
965,947 + +1.3
965,947 + -1.7
965,948 - -0.5
965,948 - -1.7
965,948 - -0.9
965,948 - -0.3
965,948 - -0.4
965,948 - -0.1
965,948 - +0.4
965,955 + +1.9
965,986 + -1.9
965,986 + -2.7
965,986 + -1.1
965,986 + +1.2
965,986 + +2.5
965,986 + +1.7
965,986 + -2.2
965,986 + +0.4
965,987 - -1.5
965,987 - +0.2
965,987 - -0.3
965,987 - -0.1
965,987 - -2.4
966,081 + LRK53_RS04120 0.15 +0.9
966,081 + LRK53_RS04120 0.15 -0.7
966,081 + LRK53_RS04120 0.15 +2.9
966,081 + LRK53_RS04120 0.15 -1.1
966,082 - LRK53_RS04120 0.15 -0.1
966,082 - LRK53_RS04120 0.15 -0.1
966,082 - LRK53_RS04120 0.15 +1.6
966,114 + LRK53_RS04120 0.23 -1.3
966,114 + LRK53_RS04120 0.23 -1.9
966,114 + LRK53_RS04120 0.23 -0.4
966,114 + LRK53_RS04120 0.23 -1.0
966,114 + LRK53_RS04120 0.23 -0.4
966,114 + LRK53_RS04120 0.23 +0.4
966,114 + LRK53_RS04120 0.23 -0.1
966,115 - LRK53_RS04120 0.23 +0.9
966,115 - LRK53_RS04120 0.23 +0.3
966,115 - LRK53_RS04120 0.23 +0.8
966,115 - LRK53_RS04120 0.23 -0.6
966,165 + LRK53_RS04120 0.34 -0.1
966,165 + LRK53_RS04120 0.34 +0.5
966,165 + LRK53_RS04120 0.34 -0.7
966,165 + LRK53_RS04120 0.34 -1.1
966,165 + LRK53_RS04120 0.34 -1.1
966,166 - LRK53_RS04120 0.34 +0.0
966,204 + LRK53_RS04120 0.42 -1.1
966,204 + LRK53_RS04120 0.42 +0.3
966,204 + LRK53_RS04120 0.42 -0.1
966,204 + LRK53_RS04120 0.42 -0.2
966,204 + LRK53_RS04120 0.42 -0.1
966,204 + LRK53_RS04120 0.42 -0.8
966,205 - LRK53_RS04120 0.43 -1.3
966,205 - LRK53_RS04120 0.43 -1.3
966,205 - LRK53_RS04120 0.43 -0.7
966,205 - LRK53_RS04120 0.43 +0.2
966,205 - LRK53_RS04120 0.43 -0.5
966,205 - LRK53_RS04120 0.43 -0.3
966,205 - LRK53_RS04120 0.43 -1.4
966,205 - LRK53_RS04120 0.43 -0.1
966,206 + LRK53_RS04120 0.43 -2.8
966,206 + LRK53_RS04120 0.43 -0.7
966,206 + LRK53_RS04120 0.43 -1.2
966,206 + LRK53_RS04120 0.43 -0.1
966,206 + LRK53_RS04120 0.43 +0.2
966,206 + LRK53_RS04120 0.43 +1.4
966,206 + LRK53_RS04120 0.43 +0.8
966,206 + LRK53_RS04120 0.43 +0.9
966,206 + LRK53_RS04120 0.43 -1.8
966,206 + LRK53_RS04120 0.43 -0.2
966,206 + LRK53_RS04120 0.43 -1.4
966,206 + LRK53_RS04120 0.43 +0.9
966,206 + LRK53_RS04120 0.43 -0.2
966,206 + LRK53_RS04120 0.43 +2.9
966,206 + LRK53_RS04120 0.43 +0.5
966,206 + LRK53_RS04120 0.43 -0.4
966,206 + LRK53_RS04120 0.43 +0.7
966,206 + LRK53_RS04120 0.43 +0.6
966,206 + LRK53_RS04120 0.43 -1.1
966,206 + LRK53_RS04120 0.43 -1.1
966,207 - LRK53_RS04120 0.43 -2.1
966,207 - LRK53_RS04120 0.43 -0.7
966,207 - LRK53_RS04120 0.43 +1.5
966,207 - LRK53_RS04120 0.43 -0.2
966,207 - LRK53_RS04120 0.43 -1.4
966,207 - LRK53_RS04120 0.43 +1.3
966,207 - LRK53_RS04120 0.43 -0.4
966,207 - LRK53_RS04120 0.43 -1.1
966,207 - LRK53_RS04120 0.43 -0.8
966,207 - LRK53_RS04120 0.43 +0.4
966,207 - LRK53_RS04120 0.43 -1.1
967,047 + LRK53_RS04125 0.38 +0.4
967,056 + LRK53_RS04125 0.40 -1.1
967,056 + LRK53_RS04125 0.40 -1.2
967,062 + LRK53_RS04125 0.40 +0.7
967,062 + LRK53_RS04125 0.40 +0.9
967,062 + LRK53_RS04125 0.40 -1.9
967,062 + LRK53_RS04125 0.40 +0.9
967,062 + LRK53_RS04125 0.40 -0.6
967,063 - LRK53_RS04125 0.40 +0.9
967,063 - LRK53_RS04125 0.40 +0.9
967,063 - LRK53_RS04125 0.40 -3.0
967,063 - LRK53_RS04125 0.40 -1.3
967,063 - LRK53_RS04125 0.40 -0.1
967,242 + LRK53_RS04125 0.62 +0.5
967,242 + LRK53_RS04125 0.62 -0.1
967,243 - LRK53_RS04125 0.62 -0.6
967,305 + LRK53_RS04125 0.70 -0.1
967,305 + LRK53_RS04125 0.70 -0.1
967,305 + LRK53_RS04125 0.70 -0.1
967,306 - LRK53_RS04125 0.70 -1.7
967,306 - LRK53_RS04125 0.70 +0.4
967,306 - LRK53_RS04125 0.70 -0.8
967,306 - LRK53_RS04125 0.70 -0.2
967,306 - LRK53_RS04125 0.70 -1.9
967,306 - LRK53_RS04125 0.70 -2.0
967,306 - LRK53_RS04125 0.70 -1.5
967,306 - LRK53_RS04125 0.70 +0.2
967,413 + LRK53_RS04125 0.83 -0.3
967,413 + LRK53_RS04125 0.83 -1.4
967,413 + LRK53_RS04125 0.83 +1.2
967,413 + LRK53_RS04125 0.83 +1.9
967,414 - LRK53_RS04125 0.83 -2.0
967,568 - -1.1
967,638 + +0.0
967,638 + +0.0
967,638 + -0.7
967,638 + -1.5
967,639 - -1.1
967,639 - +0.4
967,639 - +0.6
967,639 - -0.6
967,639 - -0.7
967,639 - +0.1
967,639 - +0.2
967,782 - LRK53_RS04130 0.22 -0.1
967,782 - LRK53_RS04130 0.22 -0.9
968,001 + LRK53_RS04130 0.75 -1.2
968,001 + LRK53_RS04130 0.75 +0.6
968,001 + LRK53_RS04130 0.75 +0.9
968,001 + LRK53_RS04130 0.75 -0.1
968,001 + LRK53_RS04130 0.75 -0.2
968,001 + LRK53_RS04130 0.75 -1.1
968,001 + LRK53_RS04130 0.75 -1.0
968,002 - LRK53_RS04130 0.75 +0.5
968,002 - LRK53_RS04130 0.75 -2.1
968,002 - LRK53_RS04130 0.75 +0.5
968,081 - -0.6
968,081 - -0.1
968,081 - -0.3
968,095 + -0.1
968,095 + +2.5
968,095 + +1.5
968,095 + +0.1
968,096 - -2.3
968,096 - +0.6
968,096 - +0.9
968,096 - -0.7
968,096 - -1.3
968,096 - +0.9
968,096 - -0.3
968,096 - -0.9
968,096 - +0.6
968,188 - LRK53_RS04135 0.19 -0.8
968,234 + LRK53_RS04135 0.46 +1.3
968,443 - -1.1
968,552 + -0.1
968,552 + +0.9

Or see this region's nucleotide sequence