Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03220 and LRK53_RS03225 are separated by 131 nucleotides LRK53_RS03225 and LRK53_RS03230 are separated by 272 nucleotides
LRK53_RS03220: LRK53_RS03220 - sulfatase-like hydrolase/transferase, at 754,904 to 756,616
_RS03220
LRK53_RS03225: LRK53_RS03225 - hypothetical protein, at 756,748 to 756,978
_RS03225
LRK53_RS03230: LRK53_RS03230 - alkaline phosphatase, at 757,251 to 759,008
_RS03230
Position (kb) 756
757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.822 kb on + strand, within LRK53_RS03220 at 755.822 kb on + strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.897 kb on + strand, within LRK53_RS03220 at 755.897 kb on + strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.936 kb on + strand, within LRK53_RS03220 at 755.946 kb on - strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.964 kb on - strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.070 kb on - strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.372 kb on - strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.426 kb on - strand, within LRK53_RS03220 at 756.465 kb on + strand at 756.465 kb on + strand at 756.465 kb on + strand at 756.465 kb on + strand at 756.466 kb on - strand at 756.466 kb on - strand at 756.466 kb on - strand at 756.466 kb on - strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.495 kb on - strand at 756.495 kb on - strand at 756.539 kb on + strand at 756.540 kb on - strand at 756.575 kb on + strand at 756.576 kb on - strand at 756.576 kb on - strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.609 kb on - strand at 756.609 kb on - strand at 756.609 kb on - strand at 756.615 kb on - strand at 756.615 kb on - strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.938 kb on - strand, within LRK53_RS03225 at 756.949 kb on + strand, within LRK53_RS03225 at 756.949 kb on + strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.989 kb on - strand at 756.989 kb on - strand at 757.004 kb on - strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.197 kb on - strand at 757.250 kb on + strand at 757.250 kb on + strand at 757.251 kb on - strand at 757.578 kb on + strand, within LRK53_RS03230 at 757.578 kb on + strand, within LRK53_RS03230 at 757.626 kb on + strand, within LRK53_RS03230 at 757.627 kb on - strand, within LRK53_RS03230 at 757.627 kb on - strand, within LRK53_RS03230 at 757.704 kb on + strand, within LRK53_RS03230 at 757.704 kb on + strand, within LRK53_RS03230 at 757.705 kb on - strand, within LRK53_RS03230 at 757.857 kb on + strand, within LRK53_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 755,813 + LRK53_RS03220 0.53 -1.8 755,813 + LRK53_RS03220 0.53 -0.5 755,813 + LRK53_RS03220 0.53 -0.1 755,813 + LRK53_RS03220 0.53 +0.6 755,813 + LRK53_RS03220 0.53 -0.2 755,813 + LRK53_RS03220 0.53 +0.1 755,813 + LRK53_RS03220 0.53 -0.6 755,814 - LRK53_RS03220 0.53 +0.0 755,814 - LRK53_RS03220 0.53 +0.2 755,814 - LRK53_RS03220 0.53 -0.6 755,814 - LRK53_RS03220 0.53 -0.0 755,814 - LRK53_RS03220 0.53 -0.4 755,814 - LRK53_RS03220 0.53 -0.8 755,814 - LRK53_RS03220 0.53 -1.9 755,814 - LRK53_RS03220 0.53 -0.1 755,814 - LRK53_RS03220 0.53 -0.1 755,814 - LRK53_RS03220 0.53 -0.4 755,814 - LRK53_RS03220 0.53 -0.8 755,822 + LRK53_RS03220 0.54 +0.9 755,822 + LRK53_RS03220 0.54 -1.1 755,823 - LRK53_RS03220 0.54 -0.4 755,823 - LRK53_RS03220 0.54 +0.2 755,823 - LRK53_RS03220 0.54 +0.4 755,823 - LRK53_RS03220 0.54 +0.1 755,897 + LRK53_RS03220 0.58 -0.1 755,897 + LRK53_RS03220 0.58 +0.5 755,898 - LRK53_RS03220 0.58 +0.8 755,898 - LRK53_RS03220 0.58 -1.2 755,898 - LRK53_RS03220 0.58 +0.6 755,898 - LRK53_RS03220 0.58 -0.4 755,936 + LRK53_RS03220 0.60 +0.4 755,946 - LRK53_RS03220 0.61 +0.6 755,963 + LRK53_RS03220 0.62 -1.9 755,963 + LRK53_RS03220 0.62 +0.8 755,963 + LRK53_RS03220 0.62 -0.6 755,963 + LRK53_RS03220 0.62 -0.3 755,964 - LRK53_RS03220 0.62 -0.1 756,038 + LRK53_RS03220 0.66 -0.8 756,038 + LRK53_RS03220 0.66 -0.9 756,038 + LRK53_RS03220 0.66 -2.1 756,038 + LRK53_RS03220 0.66 +0.9 756,039 - LRK53_RS03220 0.66 +1.5 756,039 - LRK53_RS03220 0.66 -0.4 756,039 - LRK53_RS03220 0.66 -0.6 756,070 - LRK53_RS03220 0.68 +0.0 756,197 + LRK53_RS03220 0.75 -0.4 756,197 + LRK53_RS03220 0.75 +0.9 756,197 + LRK53_RS03220 0.75 +0.4 756,197 + LRK53_RS03220 0.75 -0.9 756,197 + LRK53_RS03220 0.75 +0.1 756,197 + LRK53_RS03220 0.75 -0.1 756,197 + LRK53_RS03220 0.75 -1.1 756,197 + LRK53_RS03220 0.75 +0.4 756,197 + LRK53_RS03220 0.75 +0.4 756,197 + LRK53_RS03220 0.75 -1.4 756,197 + LRK53_RS03220 0.75 -0.5 756,197 + LRK53_RS03220 0.75 +0.9 756,197 + LRK53_RS03220 0.75 -0.2 756,197 + LRK53_RS03220 0.75 -0.2 756,198 - LRK53_RS03220 0.76 +0.4 756,198 - LRK53_RS03220 0.76 -0.6 756,198 - LRK53_RS03220 0.76 -0.5 756,198 - LRK53_RS03220 0.76 +0.3 756,198 - LRK53_RS03220 0.76 -1.0 756,198 - LRK53_RS03220 0.76 -1.2 756,198 - LRK53_RS03220 0.76 +0.1 756,198 - LRK53_RS03220 0.76 -0.4 756,198 - LRK53_RS03220 0.76 -0.1 756,198 - LRK53_RS03220 0.76 -0.3 756,198 - LRK53_RS03220 0.76 -0.6 756,198 - LRK53_RS03220 0.76 -2.5 756,198 - LRK53_RS03220 0.76 -0.5 756,198 - LRK53_RS03220 0.76 +2.4 756,198 - LRK53_RS03220 0.76 +0.7 756,198 - LRK53_RS03220 0.76 -0.6 756,198 - LRK53_RS03220 0.76 +0.7 756,198 - LRK53_RS03220 0.76 -0.5 756,372 - LRK53_RS03220 0.86 -0.5 756,380 + LRK53_RS03220 0.86 +0.8 756,380 + LRK53_RS03220 0.86 -1.3 756,380 + LRK53_RS03220 0.86 +0.0 756,380 + LRK53_RS03220 0.86 +1.9 756,380 + LRK53_RS03220 0.86 +0.6 756,380 + LRK53_RS03220 0.86 +0.5 756,380 + LRK53_RS03220 0.86 -0.5 756,380 + LRK53_RS03220 0.86 +0.4 756,380 + LRK53_RS03220 0.86 -1.9 756,380 + LRK53_RS03220 0.86 +0.7 756,380 + LRK53_RS03220 0.86 +1.3 756,380 + LRK53_RS03220 0.86 +0.1 756,381 - LRK53_RS03220 0.86 +1.4 756,381 - LRK53_RS03220 0.86 -0.1 756,381 - LRK53_RS03220 0.86 -1.6 756,381 - LRK53_RS03220 0.86 -0.8 756,381 - LRK53_RS03220 0.86 +0.2 756,381 - LRK53_RS03220 0.86 -0.3 756,381 - LRK53_RS03220 0.86 -1.0 756,381 - LRK53_RS03220 0.86 -2.4 756,383 + LRK53_RS03220 0.86 -0.3 756,383 + LRK53_RS03220 0.86 -0.2 756,383 + LRK53_RS03220 0.86 -0.1 756,383 + LRK53_RS03220 0.86 +0.9 756,383 + LRK53_RS03220 0.86 -2.1 756,383 + LRK53_RS03220 0.86 -1.9 756,383 + LRK53_RS03220 0.86 -2.5 756,383 + LRK53_RS03220 0.86 -1.9 756,383 + LRK53_RS03220 0.86 +0.9 756,383 + LRK53_RS03220 0.86 +0.4 756,383 + LRK53_RS03220 0.86 +2.7 756,383 + LRK53_RS03220 0.86 +0.9 756,383 + LRK53_RS03220 0.86 +1.9 756,383 + LRK53_RS03220 0.86 -0.4 756,383 + LRK53_RS03220 0.86 +0.9 756,383 + LRK53_RS03220 0.86 -0.1 756,383 + LRK53_RS03220 0.86 -1.9 756,383 + LRK53_RS03220 0.86 -0.3 756,384 - LRK53_RS03220 0.86 -1.6 756,384 - LRK53_RS03220 0.86 +0.3 756,384 - LRK53_RS03220 0.86 -1.4 756,384 - LRK53_RS03220 0.86 -0.7 756,384 - LRK53_RS03220 0.86 -1.4 756,384 - LRK53_RS03220 0.86 -0.3 756,384 - LRK53_RS03220 0.86 -0.6 756,384 - LRK53_RS03220 0.86 +0.4 756,384 - LRK53_RS03220 0.86 -0.6 756,384 - LRK53_RS03220 0.86 -0.6 756,384 - LRK53_RS03220 0.86 -1.3 756,384 - LRK53_RS03220 0.86 -1.9 756,426 - LRK53_RS03220 0.89 -0.8 756,465 + -0.1 756,465 + -0.1 756,465 + -0.7 756,465 + -1.0 756,466 - -0.1 756,466 - -0.5 756,466 - -1.9 756,466 - -0.1 756,494 + +1.3 756,494 + +0.6 756,494 + +0.2 756,494 + +0.2 756,495 - +1.5 756,495 - -1.4 756,539 + -0.4 756,540 - -0.3 756,575 + -0.1 756,576 - -3.1 756,576 - -0.2 756,608 + +0.9 756,608 + +0.9 756,608 + -0.6 756,608 + -0.9 756,608 + -0.6 756,608 + +1.5 756,608 + -0.1 756,609 - -0.3 756,609 - +0.9 756,609 - +0.2 756,615 - +0.5 756,615 - -1.1 756,747 + +2.5 756,747 + -0.1 756,747 + +0.6 756,747 + +0.7 756,747 + -0.1 756,747 + -0.2 756,747 + +0.4 756,747 + -1.0 756,747 + -1.5 756,747 + -1.4 756,747 + -0.6 756,747 + -1.9 756,747 + -0.5 756,747 + +0.9 756,747 + +0.2 756,747 + -1.6 756,748 - -1.1 756,748 - -1.3 756,748 - +0.2 756,748 - -1.4 756,748 - +0.1 756,748 - -0.6 756,748 - +0.7 756,748 - -0.3 756,748 - -0.2 756,748 - +0.8 756,748 - -0.9 756,748 - -0.2 756,748 - -2.4 756,748 - +1.7 756,748 - +0.1 756,748 - -2.4 756,748 - +0.6 756,748 - -1.6 756,748 - -0.6 756,748 - +0.5 756,748 - -2.1 756,748 - -0.6 756,938 - LRK53_RS03225 0.82 -2.1 756,949 + LRK53_RS03225 0.87 -0.9 756,949 + LRK53_RS03225 0.87 -0.7 756,950 - LRK53_RS03225 0.87 +0.9 756,950 - LRK53_RS03225 0.87 -1.6 756,950 - LRK53_RS03225 0.87 -1.6 756,950 - LRK53_RS03225 0.87 +0.9 756,950 - LRK53_RS03225 0.87 -0.6 756,950 - LRK53_RS03225 0.87 -0.6 756,950 - LRK53_RS03225 0.87 -1.0 756,950 - LRK53_RS03225 0.87 +1.3 756,989 - -1.4 756,989 - -0.9 757,004 - +0.9 757,075 + -0.6 757,075 + -1.4 757,075 + -1.1 757,075 + +0.2 757,075 + +0.9 757,075 + -2.1 757,075 + -0.6 757,075 + -1.5 757,075 + -1.3 757,075 + -0.3 757,197 - -0.2 757,250 + -0.9 757,250 + -1.6 757,251 - -2.2 757,578 + LRK53_RS03230 0.19 -1.6 757,578 + LRK53_RS03230 0.19 +0.8 757,626 + LRK53_RS03230 0.21 -1.6 757,627 - LRK53_RS03230 0.21 -1.5 757,627 - LRK53_RS03230 0.21 +0.9 757,704 + LRK53_RS03230 0.26 -0.3 757,704 + LRK53_RS03230 0.26 +1.9 757,705 - LRK53_RS03230 0.26 +0.8 757,857 + LRK53_RS03230 0.34 -2.1
Or see this region's nucleotide sequence