Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03140 and LRK53_RS03145 are separated by 263 nucleotides LRK53_RS03145 and LRK53_RS03150 are separated by 21 nucleotides LRK53_RS03150 and LRK53_RS03155 overlap by 4 nucleotides
LRK53_RS03140: LRK53_RS03140 - alpha-N-acetylglucosaminidase, at 732,567 to 734,792
_RS03140
LRK53_RS03145: LRK53_RS03145 - IS1595 family transposase, at 735,056 to 735,997
_RS03145
LRK53_RS03150: LRK53_RS03150 - IS4 family transposase, at 736,019 to 736,930
_RS03150
LRK53_RS03155: LRK53_RS03155 - threonine synthase, at 736,927 to 738,234
_RS03155
Position (kb) 735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.222 kb on - strand, within LRK53_RS03140 at 734.222 kb on - strand, within LRK53_RS03140 at 734.319 kb on + strand, within LRK53_RS03140 at 734.319 kb on + strand, within LRK53_RS03140 at 734.487 kb on + strand, within LRK53_RS03140 at 734.488 kb on - strand, within LRK53_RS03140 at 734.488 kb on - strand, within LRK53_RS03140 at 734.556 kb on + strand, within LRK53_RS03140 at 734.595 kb on + strand at 734.595 kb on + strand at 734.595 kb on + strand at 734.595 kb on + strand at 734.595 kb on + strand at 734.595 kb on + strand at 734.595 kb on + strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.596 kb on - strand at 734.676 kb on + strand at 734.677 kb on - strand at 734.688 kb on + strand at 734.688 kb on + strand at 734.688 kb on + strand at 734.688 kb on + strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.689 kb on - strand at 734.835 kb on + strand at 734.842 kb on + strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 734.843 kb on - strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.007 kb on + strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.008 kb on - strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.234 kb on - strand, within LRK53_RS03145 at 735.329 kb on + strand, within LRK53_RS03145 at 735.329 kb on + strand, within LRK53_RS03145 at 735.329 kb on + strand, within LRK53_RS03145 at 735.329 kb on + strand, within LRK53_RS03145 at 735.395 kb on + strand, within LRK53_RS03145 at 735.395 kb on + strand, within LRK53_RS03145 at 735.395 kb on + strand, within LRK53_RS03145 at 735.861 kb on - strand, within LRK53_RS03145 at 735.861 kb on - strand, within LRK53_RS03145 at 735.861 kb on - strand, within LRK53_RS03145 at 735.861 kb on - strand, within LRK53_RS03145 at 735.873 kb on - strand, within LRK53_RS03145 at 735.873 kb on - strand, within LRK53_RS03145 at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 736.125 kb on + strand, within LRK53_RS03150 at 736.140 kb on + strand, within LRK53_RS03150 at 736.140 kb on + strand, within LRK53_RS03150 at 736.141 kb on - strand, within LRK53_RS03150 at 736.426 kb on + strand, within LRK53_RS03150 at 736.426 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.640 kb on + strand, within LRK53_RS03150 at 736.640 kb on + strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.656 kb on + strand, within LRK53_RS03150 at 736.657 kb on - strand, within LRK53_RS03150 at 736.657 kb on - strand, within LRK53_RS03150 at 736.722 kb on - strand, within LRK53_RS03150 at 736.722 kb on - strand, within LRK53_RS03150 at 736.857 kb on - strand at 736.857 kb on - strand at 736.857 kb on - strand at 736.914 kb on - strand at 736.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 734,222 - LRK53_RS03140 0.74 +1.0 734,222 - LRK53_RS03140 0.74 -0.4 734,319 + LRK53_RS03140 0.79 +1.0 734,319 + LRK53_RS03140 0.79 -0.7 734,487 + LRK53_RS03140 0.86 -0.9 734,488 - LRK53_RS03140 0.86 -2.0 734,488 - LRK53_RS03140 0.86 +0.5 734,556 + LRK53_RS03140 0.89 -0.7 734,595 + -0.0 734,595 + -0.2 734,595 + -0.7 734,595 + +1.0 734,595 + -0.4 734,595 + +1.4 734,595 + -0.5 734,596 - -0.2 734,596 - -0.6 734,596 - -0.6 734,596 - -1.9 734,596 - -0.5 734,596 - -1.0 734,596 - +0.3 734,676 + -1.5 734,677 - -1.0 734,688 + +0.9 734,688 + +0.4 734,688 + +0.4 734,688 + +1.1 734,689 - -2.4 734,689 - -1.1 734,689 - -0.0 734,689 - -1.8 734,689 - -0.3 734,689 - +1.0 734,689 - +1.0 734,689 - -0.1 734,689 - -0.9 734,689 - -0.9 734,689 - +0.4 734,689 - -0.1 734,689 - -0.5 734,835 + -0.0 734,842 + +1.0 734,843 - +1.0 734,843 - -0.0 734,843 - -0.8 734,843 - -0.9 734,843 - +0.1 734,843 - +0.1 734,843 - -1.0 734,843 - -0.3 734,843 - +0.1 735,007 + -0.5 735,007 + +0.0 735,007 + +1.0 735,007 + +0.7 735,007 + -0.2 735,007 + +1.0 735,007 + -0.0 735,007 + +0.7 735,007 + +0.3 735,007 + -2.0 735,007 + -0.5 735,007 + +2.0 735,007 + +0.3 735,007 + +0.3 735,007 + +0.3 735,007 + -0.3 735,007 + -1.4 735,007 + +0.5 735,007 + +0.4 735,007 + +0.0 735,007 + -1.4 735,007 + -1.4 735,007 + -0.0 735,007 + -0.2 735,008 - +0.2 735,008 - +1.4 735,008 - -0.7 735,008 - -0.2 735,008 - -0.4 735,008 - -0.0 735,008 - -2.4 735,008 - -0.2 735,008 - +1.2 735,008 - +0.5 735,008 - +0.6 735,008 - +2.3 735,008 - +0.1 735,008 - -0.0 735,008 - +0.8 735,008 - +0.2 735,008 - -0.0 735,008 - +1.0 735,008 - -1.6 735,008 - -1.0 735,018 + -1.6 735,018 + +0.7 735,018 + -1.0 735,018 + -0.2 735,018 + +1.0 735,234 - LRK53_RS03145 0.19 +1.0 735,329 + LRK53_RS03145 0.29 -0.6 735,329 + LRK53_RS03145 0.29 -0.0 735,329 + LRK53_RS03145 0.29 -0.5 735,329 + LRK53_RS03145 0.29 +1.1 735,395 + LRK53_RS03145 0.36 -2.0 735,395 + LRK53_RS03145 0.36 -2.4 735,395 + LRK53_RS03145 0.36 -1.0 735,861 - LRK53_RS03145 0.85 -2.1 735,861 - LRK53_RS03145 0.85 -1.0 735,861 - LRK53_RS03145 0.85 -1.0 735,861 - LRK53_RS03145 0.85 +1.0 735,873 - LRK53_RS03145 0.87 -0.8 735,873 - LRK53_RS03145 0.87 -1.1 735,995 + +0.1 735,995 + +0.1 735,995 + -0.7 735,995 + +1.6 735,995 + +0.6 735,995 + -0.6 736,125 + LRK53_RS03150 0.12 -0.3 736,140 + LRK53_RS03150 0.13 +0.8 736,140 + LRK53_RS03150 0.13 -0.6 736,141 - LRK53_RS03150 0.13 -1.4 736,426 + LRK53_RS03150 0.45 +0.8 736,426 + LRK53_RS03150 0.45 +0.8 736,494 + LRK53_RS03150 0.52 +1.2 736,494 + LRK53_RS03150 0.52 -0.6 736,494 + LRK53_RS03150 0.52 -1.0 736,495 - LRK53_RS03150 0.52 +1.0 736,495 - LRK53_RS03150 0.52 -0.6 736,495 - LRK53_RS03150 0.52 -1.6 736,495 - LRK53_RS03150 0.52 -1.5 736,495 - LRK53_RS03150 0.52 -0.2 736,495 - LRK53_RS03150 0.52 +0.4 736,495 - LRK53_RS03150 0.52 +0.4 736,495 - LRK53_RS03150 0.52 +0.4 736,495 - LRK53_RS03150 0.52 -2.0 736,495 - LRK53_RS03150 0.52 -1.9 736,522 + LRK53_RS03150 0.55 +0.3 736,522 + LRK53_RS03150 0.55 -0.7 736,522 + LRK53_RS03150 0.55 +1.1 736,523 - LRK53_RS03150 0.55 +0.2 736,523 - LRK53_RS03150 0.55 +0.3 736,523 - LRK53_RS03150 0.55 -0.6 736,523 - LRK53_RS03150 0.55 +1.7 736,523 - LRK53_RS03150 0.55 -0.6 736,523 - LRK53_RS03150 0.55 -0.1 736,556 + LRK53_RS03150 0.59 +0.0 736,556 + LRK53_RS03150 0.59 +0.1 736,556 + LRK53_RS03150 0.59 +1.2 736,556 + LRK53_RS03150 0.59 -0.4 736,556 + LRK53_RS03150 0.59 -0.5 736,556 + LRK53_RS03150 0.59 +2.0 736,556 + LRK53_RS03150 0.59 +1.0 736,557 - LRK53_RS03150 0.59 -1.0 736,557 - LRK53_RS03150 0.59 -0.1 736,557 - LRK53_RS03150 0.59 -0.8 736,557 - LRK53_RS03150 0.59 -1.4 736,557 - LRK53_RS03150 0.59 -0.6 736,557 - LRK53_RS03150 0.59 -0.4 736,557 - LRK53_RS03150 0.59 -0.2 736,557 - LRK53_RS03150 0.59 +1.1 736,558 + LRK53_RS03150 0.59 -3.2 736,558 + LRK53_RS03150 0.59 +0.4 736,558 + LRK53_RS03150 0.59 +1.5 736,559 - LRK53_RS03150 0.59 +0.5 736,559 - LRK53_RS03150 0.59 +0.3 736,559 - LRK53_RS03150 0.59 +0.5 736,559 - LRK53_RS03150 0.59 -0.0 736,559 - LRK53_RS03150 0.59 +0.2 736,559 - LRK53_RS03150 0.59 -0.7 736,559 - LRK53_RS03150 0.59 +0.6 736,577 + LRK53_RS03150 0.61 +0.2 736,577 + LRK53_RS03150 0.61 -0.0 736,577 + LRK53_RS03150 0.61 -0.2 736,577 + LRK53_RS03150 0.61 -1.6 736,577 + LRK53_RS03150 0.61 +1.3 736,577 + LRK53_RS03150 0.61 -1.0 736,577 + LRK53_RS03150 0.61 -1.4 736,577 + LRK53_RS03150 0.61 +0.4 736,577 + LRK53_RS03150 0.61 -3.1 736,577 + LRK53_RS03150 0.61 +1.4 736,578 - LRK53_RS03150 0.61 +0.4 736,578 - LRK53_RS03150 0.61 -0.6 736,578 - LRK53_RS03150 0.61 +1.4 736,578 - LRK53_RS03150 0.61 -1.7 736,578 - LRK53_RS03150 0.61 -0.4 736,578 - LRK53_RS03150 0.61 -0.0 736,578 - LRK53_RS03150 0.61 +0.5 736,578 - LRK53_RS03150 0.61 -0.0 736,578 - LRK53_RS03150 0.61 -0.7 736,578 - LRK53_RS03150 0.61 -1.0 736,578 - LRK53_RS03150 0.61 +0.7 736,578 - LRK53_RS03150 0.61 +1.0 736,578 - LRK53_RS03150 0.61 +1.0 736,578 - LRK53_RS03150 0.61 +1.7 736,637 + LRK53_RS03150 0.68 -0.3 736,637 + LRK53_RS03150 0.68 -0.6 736,637 + LRK53_RS03150 0.68 +0.2 736,637 + LRK53_RS03150 0.68 -0.0 736,637 + LRK53_RS03150 0.68 -0.3 736,638 - LRK53_RS03150 0.68 -0.6 736,638 - LRK53_RS03150 0.68 +1.4 736,638 - LRK53_RS03150 0.68 +0.2 736,638 - LRK53_RS03150 0.68 -1.2 736,640 + LRK53_RS03150 0.68 +0.3 736,640 + LRK53_RS03150 0.68 -1.9 736,641 - LRK53_RS03150 0.68 -0.6 736,641 - LRK53_RS03150 0.68 -1.9 736,641 - LRK53_RS03150 0.68 +1.3 736,641 - LRK53_RS03150 0.68 +0.6 736,641 - LRK53_RS03150 0.68 +0.6 736,656 + LRK53_RS03150 0.70 -0.3 736,657 - LRK53_RS03150 0.70 -0.6 736,657 - LRK53_RS03150 0.70 +2.0 736,722 - LRK53_RS03150 0.77 -1.5 736,722 - LRK53_RS03150 0.77 -0.0 736,857 - -2.0 736,857 - +0.4 736,857 - -0.3 736,914 - -0.2 736,914 - +1.0
Or see this region's nucleotide sequence