Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02570

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02565 and LRK53_RS02570 are separated by 33 nucleotidesLRK53_RS02570 and LRK53_RS02575 are separated by 48 nucleotidesLRK53_RS02575 and LRK53_RS02580 are separated by 190 nucleotides LRK53_RS02565: LRK53_RS02565 - cell division protein ZapE, at 584,020 to 585,138 _RS02565 LRK53_RS02570: LRK53_RS02570 - alpha/beta hydrolase, at 585,172 to 585,861 _RS02570 LRK53_RS02575: LRK53_RS02575 - ACP phosphodiesterase, at 585,910 to 586,503 _RS02575 LRK53_RS02580: LRK53_RS02580 - c-type cytochrome, at 586,694 to 587,215 _RS02580 Position (kb) 585 586Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 584.174 kb on + strand, within LRK53_RS02565at 584.174 kb on + strand, within LRK53_RS02565at 584.174 kb on + strand, within LRK53_RS02565at 584.175 kb on - strand, within LRK53_RS02565at 584.175 kb on - strand, within LRK53_RS02565at 584.175 kb on - strand, within LRK53_RS02565at 584.175 kb on - strand, within LRK53_RS02565at 584.222 kb on + strand, within LRK53_RS02565at 584.222 kb on + strand, within LRK53_RS02565at 584.222 kb on + strand, within LRK53_RS02565at 584.223 kb on - strand, within LRK53_RS02565at 584.223 kb on - strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.285 kb on + strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.286 kb on - strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.477 kb on + strand, within LRK53_RS02565at 584.478 kb on - strand, within LRK53_RS02565at 584.478 kb on - strand, within LRK53_RS02565at 584.478 kb on - strand, within LRK53_RS02565at 584.603 kb on + strand, within LRK53_RS02565at 584.603 kb on + strand, within LRK53_RS02565at 584.603 kb on + strand, within LRK53_RS02565at 584.604 kb on - strand, within LRK53_RS02565at 584.604 kb on - strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.924 kb on + strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 584.925 kb on - strand, within LRK53_RS02565at 585.101 kb on + strandat 585.320 kb on - strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.476 kb on + strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.477 kb on - strand, within LRK53_RS02570at 585.585 kb on - strand, within LRK53_RS02570at 585.585 kb on - strand, within LRK53_RS02570at 585.585 kb on - strand, within LRK53_RS02570at 585.873 kb on + strandat 585.873 kb on + strandat 586.025 kb on + strand, within LRK53_RS02575at 586.043 kb on + strand, within LRK53_RS02575at 586.043 kb on + strand, within LRK53_RS02575at 586.044 kb on - strand, within LRK53_RS02575at 586.044 kb on - strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.063 kb on + strand, within LRK53_RS02575at 586.064 kb on - strand, within LRK53_RS02575at 586.065 kb on + strand, within LRK53_RS02575at 586.066 kb on - strand, within LRK53_RS02575at 586.085 kb on + strand, within LRK53_RS02575at 586.085 kb on + strand, within LRK53_RS02575at 586.085 kb on + strand, within LRK53_RS02575at 586.085 kb on + strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.086 kb on - strand, within LRK53_RS02575at 586.118 kb on - strand, within LRK53_RS02575at 586.210 kb on + strand, within LRK53_RS02575at 586.210 kb on + strand, within LRK53_RS02575at 586.210 kb on + strand, within LRK53_RS02575at 586.211 kb on - strand, within LRK53_RS02575at 586.211 kb on - strand, within LRK53_RS02575at 586.285 kb on + strand, within LRK53_RS02575at 586.285 kb on + strand, within LRK53_RS02575at 586.286 kb on - strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.315 kb on + strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.316 kb on - strand, within LRK53_RS02575at 586.445 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.600 kb on + strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.601 kb on - strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.695 kb on + strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.696 kb on - strandat 586.801 kb on - strand, within LRK53_RS02580at 586.801 kb on - strand, within LRK53_RS02580at 586.801 kb on - strand, within LRK53_RS02580at 586.801 kb on - strand, within LRK53_RS02580

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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584,174 + LRK53_RS02565 0.14 +0.4
584,174 + LRK53_RS02565 0.14 -2.0
584,174 + LRK53_RS02565 0.14 -1.3
584,175 - LRK53_RS02565 0.14 +0.6
584,175 - LRK53_RS02565 0.14 +0.1
584,175 - LRK53_RS02565 0.14 -0.8
584,175 - LRK53_RS02565 0.14 -0.6
584,222 + LRK53_RS02565 0.18 +0.1
584,222 + LRK53_RS02565 0.18 -0.4
584,222 + LRK53_RS02565 0.18 -1.1
584,223 - LRK53_RS02565 0.18 +1.0
584,223 - LRK53_RS02565 0.18 -0.0
584,285 + LRK53_RS02565 0.24 +1.4
584,285 + LRK53_RS02565 0.24 -0.6
584,285 + LRK53_RS02565 0.24 -0.6
584,285 + LRK53_RS02565 0.24 -0.0
584,285 + LRK53_RS02565 0.24 +1.0
584,285 + LRK53_RS02565 0.24 -2.1
584,285 + LRK53_RS02565 0.24 -0.1
584,286 - LRK53_RS02565 0.24 -0.6
584,286 - LRK53_RS02565 0.24 -2.3
584,286 - LRK53_RS02565 0.24 +0.5
584,286 - LRK53_RS02565 0.24 -1.6
584,286 - LRK53_RS02565 0.24 +1.0
584,286 - LRK53_RS02565 0.24 -0.0
584,477 + LRK53_RS02565 0.41 -0.6
584,477 + LRK53_RS02565 0.41 -1.0
584,477 + LRK53_RS02565 0.41 -0.7
584,477 + LRK53_RS02565 0.41 -1.3
584,477 + LRK53_RS02565 0.41 -2.2
584,477 + LRK53_RS02565 0.41 -1.0
584,477 + LRK53_RS02565 0.41 -0.1
584,478 - LRK53_RS02565 0.41 +0.2
584,478 - LRK53_RS02565 0.41 +1.0
584,478 - LRK53_RS02565 0.41 -0.5
584,603 + LRK53_RS02565 0.52 -1.2
584,603 + LRK53_RS02565 0.52 -1.0
584,603 + LRK53_RS02565 0.52 +0.4
584,604 - LRK53_RS02565 0.52 -0.3
584,604 - LRK53_RS02565 0.52 +1.0
584,924 + LRK53_RS02565 0.81 -0.7
584,924 + LRK53_RS02565 0.81 -1.0
584,924 + LRK53_RS02565 0.81 -1.3
584,924 + LRK53_RS02565 0.81 -0.9
584,924 + LRK53_RS02565 0.81 +0.4
584,924 + LRK53_RS02565 0.81 +0.3
584,924 + LRK53_RS02565 0.81 -1.1
584,924 + LRK53_RS02565 0.81 -0.0
584,924 + LRK53_RS02565 0.81 +1.6
584,924 + LRK53_RS02565 0.81 -2.0
584,924 + LRK53_RS02565 0.81 -0.0
584,924 + LRK53_RS02565 0.81 +2.6
584,924 + LRK53_RS02565 0.81 +1.0
584,924 + LRK53_RS02565 0.81 -0.4
584,924 + LRK53_RS02565 0.81 -1.1
584,924 + LRK53_RS02565 0.81 -0.8
584,924 + LRK53_RS02565 0.81 -0.3
584,924 + LRK53_RS02565 0.81 -0.4
584,924 + LRK53_RS02565 0.81 -1.5
584,924 + LRK53_RS02565 0.81 -1.2
584,924 + LRK53_RS02565 0.81 -3.5
584,924 + LRK53_RS02565 0.81 +0.4
584,925 - LRK53_RS02565 0.81 -0.2
584,925 - LRK53_RS02565 0.81 +0.3
584,925 - LRK53_RS02565 0.81 +0.4
584,925 - LRK53_RS02565 0.81 +0.9
584,925 - LRK53_RS02565 0.81 -2.2
584,925 - LRK53_RS02565 0.81 -0.3
584,925 - LRK53_RS02565 0.81 +1.0
584,925 - LRK53_RS02565 0.81 -0.3
584,925 - LRK53_RS02565 0.81 +1.1
584,925 - LRK53_RS02565 0.81 -1.5
584,925 - LRK53_RS02565 0.81 -1.3
584,925 - LRK53_RS02565 0.81 -1.5
584,925 - LRK53_RS02565 0.81 -1.2
584,925 - LRK53_RS02565 0.81 -0.8
584,925 - LRK53_RS02565 0.81 -1.3
585,101 + -1.0
585,320 - LRK53_RS02570 0.21 -2.0
585,476 + LRK53_RS02570 0.44 -0.7
585,476 + LRK53_RS02570 0.44 -0.0
585,476 + LRK53_RS02570 0.44 +1.6
585,476 + LRK53_RS02570 0.44 +1.6
585,476 + LRK53_RS02570 0.44 -0.7
585,476 + LRK53_RS02570 0.44 -1.3
585,476 + LRK53_RS02570 0.44 -1.8
585,476 + LRK53_RS02570 0.44 -2.3
585,476 + LRK53_RS02570 0.44 -0.5
585,476 + LRK53_RS02570 0.44 -1.5
585,476 + LRK53_RS02570 0.44 -1.0
585,476 + LRK53_RS02570 0.44 -1.3
585,477 - LRK53_RS02570 0.44 -1.0
585,477 - LRK53_RS02570 0.44 +1.2
585,477 - LRK53_RS02570 0.44 -0.4
585,477 - LRK53_RS02570 0.44 -1.0
585,477 - LRK53_RS02570 0.44 -0.2
585,477 - LRK53_RS02570 0.44 -2.3
585,477 - LRK53_RS02570 0.44 +0.4
585,477 - LRK53_RS02570 0.44 -1.0
585,477 - LRK53_RS02570 0.44 +1.0
585,477 - LRK53_RS02570 0.44 -1.3
585,477 - LRK53_RS02570 0.44 -1.3
585,585 - LRK53_RS02570 0.60 -0.0
585,585 - LRK53_RS02570 0.60 -0.3
585,585 - LRK53_RS02570 0.60 +2.0
585,873 + -1.0
585,873 + -1.3
586,025 + LRK53_RS02575 0.19 +0.3
586,043 + LRK53_RS02575 0.22 +0.2
586,043 + LRK53_RS02575 0.22 -1.1
586,044 - LRK53_RS02575 0.23 -4.0
586,044 - LRK53_RS02575 0.23 -1.3
586,063 + LRK53_RS02575 0.26 +0.3
586,063 + LRK53_RS02575 0.26 -0.2
586,063 + LRK53_RS02575 0.26 -0.2
586,063 + LRK53_RS02575 0.26 +0.8
586,063 + LRK53_RS02575 0.26 -2.0
586,063 + LRK53_RS02575 0.26 -0.4
586,063 + LRK53_RS02575 0.26 -0.0
586,063 + LRK53_RS02575 0.26 -0.8
586,063 + LRK53_RS02575 0.26 -1.9
586,064 - LRK53_RS02575 0.26 +0.2
586,065 + LRK53_RS02575 0.26 -1.9
586,066 - LRK53_RS02575 0.26 -2.5
586,085 + LRK53_RS02575 0.29 -0.1
586,085 + LRK53_RS02575 0.29 -0.3
586,085 + LRK53_RS02575 0.29 +0.8
586,085 + LRK53_RS02575 0.29 -0.3
586,086 - LRK53_RS02575 0.30 +0.8
586,086 - LRK53_RS02575 0.30 -0.2
586,086 - LRK53_RS02575 0.30 -1.6
586,086 - LRK53_RS02575 0.30 +0.0
586,086 - LRK53_RS02575 0.30 -0.3
586,086 - LRK53_RS02575 0.30 -1.0
586,086 - LRK53_RS02575 0.30 +1.0
586,118 - LRK53_RS02575 0.35 +0.8
586,210 + LRK53_RS02575 0.51 +1.0
586,210 + LRK53_RS02575 0.51 -0.8
586,210 + LRK53_RS02575 0.51 -2.2
586,211 - LRK53_RS02575 0.51 +0.6
586,211 - LRK53_RS02575 0.51 +1.1
586,285 + LRK53_RS02575 0.63 +0.7
586,285 + LRK53_RS02575 0.63 -1.9
586,286 - LRK53_RS02575 0.63 +0.2
586,315 + LRK53_RS02575 0.68 +0.3
586,315 + LRK53_RS02575 0.68 -1.0
586,315 + LRK53_RS02575 0.68 -0.0
586,315 + LRK53_RS02575 0.68 -0.5
586,315 + LRK53_RS02575 0.68 -0.3
586,315 + LRK53_RS02575 0.68 -0.2
586,315 + LRK53_RS02575 0.68 -1.0
586,315 + LRK53_RS02575 0.68 -2.5
586,315 + LRK53_RS02575 0.68 -0.8
586,315 + LRK53_RS02575 0.68 +0.7
586,316 - LRK53_RS02575 0.68 -0.0
586,316 - LRK53_RS02575 0.68 +0.7
586,316 - LRK53_RS02575 0.68 +1.6
586,316 - LRK53_RS02575 0.68 +2.2
586,316 - LRK53_RS02575 0.68 +0.2
586,316 - LRK53_RS02575 0.68 -1.0
586,316 - LRK53_RS02575 0.68 -0.1
586,316 - LRK53_RS02575 0.68 -2.0
586,316 - LRK53_RS02575 0.68 +1.0
586,445 + -1.0
586,600 + -2.1
586,600 + -0.2
586,600 + -0.6
586,600 + -1.4
586,600 + -0.5
586,600 + -1.5
586,600 + +1.0
586,600 + -1.3
586,600 + -0.6
586,601 - -0.8
586,601 - +0.3
586,601 - +0.2
586,601 - -1.8
586,601 - -0.7
586,601 - -0.7
586,601 - -0.4
586,601 - -1.4
586,695 + +0.1
586,695 + -0.2
586,695 + -2.0
586,695 + -0.3
586,695 + +0.1
586,695 + -1.9
586,695 + -0.8
586,695 + +0.3
586,695 + -0.1
586,695 + -0.9
586,695 + -0.7
586,695 + -1.3
586,695 + +2.4
586,695 + +0.5
586,695 + -0.9
586,695 + -0.6
586,695 + -1.1
586,695 + -0.2
586,695 + -1.9
586,695 + -0.2
586,695 + -1.3
586,695 + -0.6
586,696 - -1.0
586,696 - -1.1
586,696 - -0.5
586,696 - -0.9
586,696 - -2.7
586,696 - +0.6
586,696 - -0.3
586,696 - +1.0
586,696 - +0.3
586,696 - -0.5
586,696 - -1.3
586,696 - +0.1
586,696 - -0.5
586,696 - +0.1
586,801 - LRK53_RS02580 0.20 -1.6
586,801 - LRK53_RS02580 0.20 -0.0
586,801 - LRK53_RS02580 0.20 -0.4
586,801 - LRK53_RS02580 0.20 -2.5

Or see this region's nucleotide sequence