Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02295

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02290 and LRK53_RS02295 are separated by 0 nucleotidesLRK53_RS02295 and LRK53_RS02300 are separated by 156 nucleotidesLRK53_RS02300 and LRK53_RS02305 are separated by 27 nucleotides LRK53_RS02290: LRK53_RS02290 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 529,228 to 530,571 _RS02290 LRK53_RS02295: LRK53_RS02295 - ribokinase, at 530,572 to 531,468 _RS02295 LRK53_RS02300: LRK53_RS02300 - hypothetical protein, at 531,625 to 532,254 _RS02300 LRK53_RS02305: LRK53_RS02305 - ATP-dependent protease ATPase subunit HslU, at 532,282 to 533,616 _RS02305 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 529.734 kb on + strand, within LRK53_RS02290at 529.735 kb on - strand, within LRK53_RS02290at 529.859 kb on + strand, within LRK53_RS02290at 529.977 kb on + strand, within LRK53_RS02290at 530.515 kb on + strandat 530.516 kb on - strandat 530.516 kb on - strandat 530.676 kb on + strand, within LRK53_RS02295at 530.677 kb on - strand, within LRK53_RS02295at 530.677 kb on - strand, within LRK53_RS02295at 530.836 kb on + strand, within LRK53_RS02295at 530.836 kb on + strand, within LRK53_RS02295at 530.837 kb on - strand, within LRK53_RS02295at 530.837 kb on - strand, within LRK53_RS02295at 530.837 kb on - strand, within LRK53_RS02295at 530.837 kb on - strand, within LRK53_RS02295at 530.933 kb on + strand, within LRK53_RS02295at 530.933 kb on + strand, within LRK53_RS02295at 530.933 kb on + strand, within LRK53_RS02295at 530.934 kb on - strand, within LRK53_RS02295at 530.934 kb on - strand, within LRK53_RS02295at 530.934 kb on - strand, within LRK53_RS02295at 531.435 kb on + strandat 531.435 kb on + strandat 531.435 kb on + strandat 531.435 kb on + strandat 531.435 kb on + strandat 531.435 kb on + strandat 531.435 kb on + strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.436 kb on - strandat 531.510 kb on + strandat 531.511 kb on - strandat 531.511 kb on - strandat 531.710 kb on + strand, within LRK53_RS02300at 531.710 kb on + strand, within LRK53_RS02300at 531.711 kb on - strand, within LRK53_RS02300at 531.842 kb on + strand, within LRK53_RS02300at 531.843 kb on - strand, within LRK53_RS02300at 531.843 kb on - strand, within LRK53_RS02300at 531.843 kb on - strand, within LRK53_RS02300at 531.843 kb on - strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.052 kb on + strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.053 kb on - strand, within LRK53_RS02300at 532.233 kb on + strandat 532.425 kb on + strand, within LRK53_RS02305at 532.426 kb on - strand, within LRK53_RS02305

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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529,734 + LRK53_RS02290 0.38 -0.6
529,735 - LRK53_RS02290 0.38 -0.0
529,859 + LRK53_RS02290 0.47 -0.8
529,977 + LRK53_RS02290 0.56 +0.6
530,515 + -2.7
530,516 - +0.2
530,516 - -1.3
530,676 + LRK53_RS02295 0.12 -1.3
530,677 - LRK53_RS02295 0.12 -0.5
530,677 - LRK53_RS02295 0.12 -1.2
530,836 + LRK53_RS02295 0.29 +1.0
530,836 + LRK53_RS02295 0.29 -2.0
530,837 - LRK53_RS02295 0.30 -0.6
530,837 - LRK53_RS02295 0.30 -0.6
530,837 - LRK53_RS02295 0.30 -0.0
530,837 - LRK53_RS02295 0.30 -1.4
530,933 + LRK53_RS02295 0.40 -0.8
530,933 + LRK53_RS02295 0.40 -0.0
530,933 + LRK53_RS02295 0.40 -0.0
530,934 - LRK53_RS02295 0.40 -1.4
530,934 - LRK53_RS02295 0.40 -0.8
530,934 - LRK53_RS02295 0.40 -1.0
531,435 + -1.0
531,435 + -0.5
531,435 + +1.4
531,435 + -2.7
531,435 + -0.0
531,435 + +0.8
531,435 + -0.9
531,436 - -0.4
531,436 - -0.6
531,436 - +1.0
531,436 - -2.0
531,436 - +0.6
531,436 - -0.2
531,436 - +1.4
531,436 - +0.4
531,436 - -1.0
531,436 - -1.0
531,436 - +0.2
531,510 + +0.1
531,511 - -1.6
531,511 - +0.3
531,710 + LRK53_RS02300 0.13 -0.8
531,710 + LRK53_RS02300 0.13 -1.8
531,711 - LRK53_RS02300 0.14 +0.6
531,842 + LRK53_RS02300 0.34 +4.0
531,843 - LRK53_RS02300 0.35 +0.6
531,843 - LRK53_RS02300 0.35 -0.6
531,843 - LRK53_RS02300 0.35 +2.0
531,843 - LRK53_RS02300 0.35 -0.6
532,052 + LRK53_RS02300 0.68 -1.4
532,052 + LRK53_RS02300 0.68 -1.6
532,052 + LRK53_RS02300 0.68 -0.0
532,052 + LRK53_RS02300 0.68 -2.6
532,052 + LRK53_RS02300 0.68 -1.4
532,052 + LRK53_RS02300 0.68 +2.0
532,052 + LRK53_RS02300 0.68 +1.0
532,052 + LRK53_RS02300 0.68 -1.6
532,052 + LRK53_RS02300 0.68 +1.0
532,053 - LRK53_RS02300 0.68 -0.4
532,053 - LRK53_RS02300 0.68 +1.0
532,053 - LRK53_RS02300 0.68 -0.0
532,053 - LRK53_RS02300 0.68 -0.0
532,053 - LRK53_RS02300 0.68 -1.2
532,053 - LRK53_RS02300 0.68 -1.0
532,053 - LRK53_RS02300 0.68 -1.0
532,053 - LRK53_RS02300 0.68 +1.0
532,053 - LRK53_RS02300 0.68 -0.2
532,053 - LRK53_RS02300 0.68 +1.0
532,053 - LRK53_RS02300 0.68 -1.2
532,233 + -1.8
532,425 + LRK53_RS02305 0.11 +0.3
532,426 - LRK53_RS02305 0.11 -1.2

Or see this region's nucleotide sequence