Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02270 and LRK53_RS02275 are separated by 103 nucleotides LRK53_RS02275 and LRK53_RS02280 are separated by 68 nucleotides LRK53_RS02280 and LRK53_RS02285 overlap by 4 nucleotides
LRK53_RS02270: LRK53_RS02270 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 525,553 to 526,746
_RS02270
LRK53_RS02275: LRK53_RS02275 - YdcF family protein, at 526,850 to 527,587
_RS02275
LRK53_RS02280: LRK53_RS02280 - hypothetical protein, at 527,656 to 528,168
_RS02280
LRK53_RS02285: LRK53_RS02285 - oxygen-dependent coproporphyrinogen oxidase, at 528,165 to 529,067
_RS02285
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.721 kb on + strand at 526.721 kb on + strand at 526.721 kb on + strand at 526.721 kb on + strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.849 kb on + strand at 526.849 kb on + strand at 526.849 kb on + strand at 526.849 kb on + strand at 526.850 kb on - strand at 526.850 kb on - strand at 526.922 kb on + strand at 526.922 kb on + strand at 526.923 kb on - strand at 526.923 kb on - strand at 526.923 kb on - strand at 526.923 kb on - strand at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 527.006 kb on + strand, within LRK53_RS02275 at 527.006 kb on + strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.117 kb on + strand, within LRK53_RS02275 at 527.117 kb on + strand, within LRK53_RS02275 at 527.118 kb on - strand, within LRK53_RS02275 at 527.481 kb on - strand, within LRK53_RS02275 at 527.481 kb on - strand, within LRK53_RS02275 at 527.481 kb on - strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.763 kb on + strand, within LRK53_RS02280 at 527.763 kb on + strand, within LRK53_RS02280 at 527.763 kb on + strand, within LRK53_RS02280 at 527.764 kb on - strand, within LRK53_RS02280 at 527.764 kb on - strand, within LRK53_RS02280 at 527.764 kb on - strand, within LRK53_RS02280 at 527.824 kb on + strand, within LRK53_RS02280 at 527.825 kb on - strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.875 kb on + strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.876 kb on - strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.899 kb on + strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.900 kb on - strand, within LRK53_RS02280 at 527.941 kb on + strand, within LRK53_RS02280 at 527.941 kb on + strand, within LRK53_RS02280 at 527.942 kb on - strand, within LRK53_RS02280 at 527.942 kb on - strand, within LRK53_RS02280 at 527.942 kb on - strand, within LRK53_RS02280 at 527.942 kb on - strand, within LRK53_RS02280 at 528.131 kb on + strand at 528.131 kb on + strand at 528.131 kb on + strand at 528.131 kb on + strand at 528.132 kb on - strand at 528.132 kb on - strand at 528.132 kb on - strand at 528.132 kb on - strand at 528.132 kb on - strand at 528.589 kb on + strand, within LRK53_RS02285 at 528.589 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.676 kb on - strand, within LRK53_RS02285 at 528.681 kb on + strand, within LRK53_RS02285 at 528.681 kb on + strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.804 kb on + strand, within LRK53_RS02285 at 528.805 kb on - strand, within LRK53_RS02285 at 528.840 kb on + strand, within LRK53_RS02285 at 528.870 kb on + strand, within LRK53_RS02285 at 528.885 kb on + strand, within LRK53_RS02285 at 528.886 kb on - strand, within LRK53_RS02285 at 528.907 kb on - strand, within LRK53_RS02285 at 529.035 kb on - strand at 529.035 kb on - strand at 529.041 kb on + strand at 529.041 kb on + strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 526,721 + +0.9 526,721 + +1.6 526,721 + +0.6 526,721 + -1.2 526,722 - -0.2 526,722 - +0.4 526,722 - -0.8 526,792 + -2.2 526,792 + -1.0 526,792 + +1.0 526,792 + -0.7 526,792 + -0.6 526,792 + -0.6 526,792 + +1.1 526,793 - +1.0 526,793 - -0.6 526,793 - +1.0 526,793 - +3.0 526,793 - +0.7 526,793 - +2.2 526,793 - -0.6 526,849 + -1.1 526,849 + +2.0 526,849 + +0.1 526,849 + -0.3 526,850 - -1.1 526,850 - -0.3 526,922 + -1.3 526,922 + -0.0 526,923 - -0.4 526,923 - +1.6 526,923 - -1.0 526,923 - +2.6 526,946 + LRK53_RS02275 0.13 -1.3 526,946 + LRK53_RS02275 0.13 +0.0 526,946 + LRK53_RS02275 0.13 +0.3 526,946 + LRK53_RS02275 0.13 -0.0 526,946 + LRK53_RS02275 0.13 +0.8 526,947 - LRK53_RS02275 0.13 -0.1 526,947 - LRK53_RS02275 0.13 -0.6 526,947 - LRK53_RS02275 0.13 +2.0 526,947 - LRK53_RS02275 0.13 -2.6 526,947 - LRK53_RS02275 0.13 -0.7 526,947 - LRK53_RS02275 0.13 -0.2 527,006 + LRK53_RS02275 0.21 +0.2 527,006 + LRK53_RS02275 0.21 -1.3 527,007 - LRK53_RS02275 0.21 -0.6 527,007 - LRK53_RS02275 0.21 -2.2 527,007 - LRK53_RS02275 0.21 -1.0 527,007 - LRK53_RS02275 0.21 -0.8 527,117 + LRK53_RS02275 0.36 +1.0 527,117 + LRK53_RS02275 0.36 +1.8 527,118 - LRK53_RS02275 0.36 -0.7 527,481 - LRK53_RS02275 0.86 -2.0 527,481 - LRK53_RS02275 0.86 +1.0 527,481 - LRK53_RS02275 0.86 +2.0 527,510 + LRK53_RS02275 0.89 -1.0 527,510 + LRK53_RS02275 0.89 -0.6 527,510 + LRK53_RS02275 0.89 +0.3 527,510 + LRK53_RS02275 0.89 -1.3 527,510 + LRK53_RS02275 0.89 +0.2 527,510 + LRK53_RS02275 0.89 -0.0 527,511 - LRK53_RS02275 0.90 -0.3 527,511 - LRK53_RS02275 0.90 -0.0 527,511 - LRK53_RS02275 0.90 -0.2 527,763 + LRK53_RS02280 0.21 -1.8 527,763 + LRK53_RS02280 0.21 +0.5 527,763 + LRK53_RS02280 0.21 -0.4 527,764 - LRK53_RS02280 0.21 -0.6 527,764 - LRK53_RS02280 0.21 +1.0 527,764 - LRK53_RS02280 0.21 +2.0 527,824 + LRK53_RS02280 0.33 +0.1 527,825 - LRK53_RS02280 0.33 +1.6 527,875 + LRK53_RS02280 0.43 -0.4 527,875 + LRK53_RS02280 0.43 -0.4 527,875 + LRK53_RS02280 0.43 -0.0 527,875 + LRK53_RS02280 0.43 -0.9 527,875 + LRK53_RS02280 0.43 +2.0 527,875 + LRK53_RS02280 0.43 -0.1 527,875 + LRK53_RS02280 0.43 -2.0 527,875 + LRK53_RS02280 0.43 -2.0 527,875 + LRK53_RS02280 0.43 -1.3 527,875 + LRK53_RS02280 0.43 +0.5 527,875 + LRK53_RS02280 0.43 -2.3 527,875 + LRK53_RS02280 0.43 +0.3 527,875 + LRK53_RS02280 0.43 -0.0 527,875 + LRK53_RS02280 0.43 -0.4 527,875 + LRK53_RS02280 0.43 -0.8 527,875 + LRK53_RS02280 0.43 -0.5 527,875 + LRK53_RS02280 0.43 -1.3 527,875 + LRK53_RS02280 0.43 -1.5 527,875 + LRK53_RS02280 0.43 +1.0 527,875 + LRK53_RS02280 0.43 +1.0 527,875 + LRK53_RS02280 0.43 +0.2 527,875 + LRK53_RS02280 0.43 +0.2 527,875 + LRK53_RS02280 0.43 +0.9 527,876 - LRK53_RS02280 0.43 -2.0 527,876 - LRK53_RS02280 0.43 -0.0 527,876 - LRK53_RS02280 0.43 -0.0 527,876 - LRK53_RS02280 0.43 +0.8 527,876 - LRK53_RS02280 0.43 -0.2 527,876 - LRK53_RS02280 0.43 +0.3 527,876 - LRK53_RS02280 0.43 +0.8 527,876 - LRK53_RS02280 0.43 -2.0 527,876 - LRK53_RS02280 0.43 -0.6 527,876 - LRK53_RS02280 0.43 +0.9 527,876 - LRK53_RS02280 0.43 +1.0 527,876 - LRK53_RS02280 0.43 +0.1 527,876 - LRK53_RS02280 0.43 +0.1 527,876 - LRK53_RS02280 0.43 -2.3 527,876 - LRK53_RS02280 0.43 +2.0 527,876 - LRK53_RS02280 0.43 -0.0 527,876 - LRK53_RS02280 0.43 +0.8 527,876 - LRK53_RS02280 0.43 +0.4 527,876 - LRK53_RS02280 0.43 +0.3 527,876 - LRK53_RS02280 0.43 -0.6 527,876 - LRK53_RS02280 0.43 +0.6 527,876 - LRK53_RS02280 0.43 -0.0 527,899 + LRK53_RS02280 0.47 +1.2 527,899 + LRK53_RS02280 0.47 +0.4 527,899 + LRK53_RS02280 0.47 -0.7 527,899 + LRK53_RS02280 0.47 -0.2 527,899 + LRK53_RS02280 0.47 +0.2 527,899 + LRK53_RS02280 0.47 -0.3 527,899 + LRK53_RS02280 0.47 +0.4 527,899 + LRK53_RS02280 0.47 -0.8 527,899 + LRK53_RS02280 0.47 -0.0 527,899 + LRK53_RS02280 0.47 +1.0 527,899 + LRK53_RS02280 0.47 +0.4 527,899 + LRK53_RS02280 0.47 -0.0 527,900 - LRK53_RS02280 0.48 -1.6 527,900 - LRK53_RS02280 0.48 +2.0 527,900 - LRK53_RS02280 0.48 +1.0 527,900 - LRK53_RS02280 0.48 +1.4 527,900 - LRK53_RS02280 0.48 +2.6 527,900 - LRK53_RS02280 0.48 -0.0 527,900 - LRK53_RS02280 0.48 +1.6 527,900 - LRK53_RS02280 0.48 +0.6 527,900 - LRK53_RS02280 0.48 +0.7 527,900 - LRK53_RS02280 0.48 -0.0 527,900 - LRK53_RS02280 0.48 +0.2 527,900 - LRK53_RS02280 0.48 +1.3 527,900 - LRK53_RS02280 0.48 +1.6 527,900 - LRK53_RS02280 0.48 -1.1 527,941 + LRK53_RS02280 0.56 -0.3 527,941 + LRK53_RS02280 0.56 -0.3 527,942 - LRK53_RS02280 0.56 -1.8 527,942 - LRK53_RS02280 0.56 +2.6 527,942 - LRK53_RS02280 0.56 -0.6 527,942 - LRK53_RS02280 0.56 -0.8 528,131 + -0.0 528,131 + -1.3 528,131 + -0.3 528,131 + +1.8 528,132 - -0.0 528,132 - +1.0 528,132 - +0.4 528,132 - -0.7 528,132 - -0.5 528,589 + LRK53_RS02285 0.47 +1.0 528,589 + LRK53_RS02285 0.47 +1.4 528,675 + LRK53_RS02285 0.56 +1.0 528,675 + LRK53_RS02285 0.56 +0.4 528,675 + LRK53_RS02285 0.56 +1.0 528,675 + LRK53_RS02285 0.56 +3.0 528,676 - LRK53_RS02285 0.57 -1.3 528,681 + LRK53_RS02285 0.57 -0.0 528,681 + LRK53_RS02285 0.57 -0.6 528,682 - LRK53_RS02285 0.57 -1.8 528,682 - LRK53_RS02285 0.57 +0.2 528,682 - LRK53_RS02285 0.57 +0.4 528,682 - LRK53_RS02285 0.57 +1.0 528,726 + LRK53_RS02285 0.62 -0.0 528,726 + LRK53_RS02285 0.62 -1.3 528,726 + LRK53_RS02285 0.62 -1.3 528,804 + LRK53_RS02285 0.71 -0.6 528,805 - LRK53_RS02285 0.71 +1.0 528,840 + LRK53_RS02285 0.75 -0.0 528,870 + LRK53_RS02285 0.78 -0.6 528,885 + LRK53_RS02285 0.80 -0.0 528,886 - LRK53_RS02285 0.80 +1.0 528,907 - LRK53_RS02285 0.82 +0.4 529,035 - -0.6 529,035 - +0.3 529,041 + -0.1 529,041 + -1.0 529,042 - -0.0 529,042 - -0.8 529,042 - -2.1 529,066 - +2.0 529,066 - -1.0 529,066 - +1.0 529,066 - -1.0 529,066 - -0.0 529,066 - -0.2 529,066 - +0.8
Or see this region's nucleotide sequence