Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00905

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00900 and LRK53_RS00905 overlap by 4 nucleotidesLRK53_RS00905 and LRK53_RS00910 are separated by 297 nucleotides LRK53_RS00900: LRK53_RS00900 - ATP-binding protein, at 227,891 to 229,312 _RS00900 LRK53_RS00905: LRK53_RS00905 - response regulator, at 229,309 to 229,974 _RS00905 LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166 _RS00910 Position (kb) 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.728 kb on + strand, within LRK53_RS00900at 228.729 kb on - strand, within LRK53_RS00900at 228.755 kb on + strand, within LRK53_RS00900at 228.894 kb on + strand, within LRK53_RS00900at 228.895 kb on - strand, within LRK53_RS00900at 228.895 kb on - strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.908 kb on + strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 228.909 kb on - strand, within LRK53_RS00900at 229.023 kb on + strand, within LRK53_RS00900at 229.023 kb on + strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.024 kb on - strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.027 kb on + strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.028 kb on - strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.029 kb on + strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.030 kb on - strand, within LRK53_RS00900at 229.334 kb on + strandat 229.334 kb on + strandat 229.334 kb on + strandat 229.335 kb on - strandat 229.335 kb on - strandat 229.439 kb on + strand, within LRK53_RS00905at 229.440 kb on - strand, within LRK53_RS00905at 229.440 kb on - strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.682 kb on + strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.683 kb on - strand, within LRK53_RS00905at 229.770 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.899 kb on + strand, within LRK53_RS00905at 229.900 kb on - strand, within LRK53_RS00905at 229.901 kb on + strand, within LRK53_RS00905at 229.902 kb on - strand, within LRK53_RS00905at 229.902 kb on - strand, within LRK53_RS00905at 230.090 kb on - strandat 230.090 kb on - strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.091 kb on + strandat 230.092 kb on - strandat 230.402 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.561 kb on - strandat 230.561 kb on - strandat 230.561 kb on - strandat 230.561 kb on - strandat 230.570 kb on - strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.572 kb on + strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.573 kb on - strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.605 kb on + strand, within LRK53_RS00910at 230.606 kb on - strand, within LRK53_RS00910at 230.606 kb on - strand, within LRK53_RS00910at 230.723 kb on - strand, within LRK53_RS00910at 230.826 kb on + strand, within LRK53_RS00910at 230.827 kb on - strand, within LRK53_RS00910at 230.840 kb on - strand, within LRK53_RS00910at 230.840 kb on - strand, within LRK53_RS00910at 230.893 kb on + strand, within LRK53_RS00910at 230.893 kb on + strand, within LRK53_RS00910at 230.893 kb on + strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910at 230.894 kb on - strand, within LRK53_RS00910

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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228,728 + LRK53_RS00900 0.59 -1.3
228,729 - LRK53_RS00900 0.59 -1.1
228,755 + LRK53_RS00900 0.61 -1.0
228,894 + LRK53_RS00900 0.71 -0.2
228,895 - LRK53_RS00900 0.71 -2.0
228,895 - LRK53_RS00900 0.71 +1.0
228,908 + LRK53_RS00900 0.72 +0.3
228,908 + LRK53_RS00900 0.72 -0.5
228,908 + LRK53_RS00900 0.72 +1.0
228,908 + LRK53_RS00900 0.72 +0.2
228,908 + LRK53_RS00900 0.72 -0.6
228,908 + LRK53_RS00900 0.72 -2.4
228,908 + LRK53_RS00900 0.72 -0.7
228,908 + LRK53_RS00900 0.72 +0.0
228,908 + LRK53_RS00900 0.72 -1.3
228,908 + LRK53_RS00900 0.72 -1.0
228,908 + LRK53_RS00900 0.72 -0.7
228,908 + LRK53_RS00900 0.72 -1.6
228,908 + LRK53_RS00900 0.72 +1.3
228,908 + LRK53_RS00900 0.72 -1.0
228,908 + LRK53_RS00900 0.72 -2.4
228,908 + LRK53_RS00900 0.72 +1.0
228,908 + LRK53_RS00900 0.72 -2.3
228,908 + LRK53_RS00900 0.72 -1.3
228,908 + LRK53_RS00900 0.72 +0.0
228,908 + LRK53_RS00900 0.72 -0.6
228,908 + LRK53_RS00900 0.72 -1.6
228,908 + LRK53_RS00900 0.72 +0.8
228,908 + LRK53_RS00900 0.72 -2.0
228,908 + LRK53_RS00900 0.72 -1.0
228,908 + LRK53_RS00900 0.72 -0.8
228,908 + LRK53_RS00900 0.72 -1.8
228,908 + LRK53_RS00900 0.72 -0.3
228,908 + LRK53_RS00900 0.72 -0.2
228,908 + LRK53_RS00900 0.72 +0.2
228,908 + LRK53_RS00900 0.72 -0.2
228,908 + LRK53_RS00900 0.72 +0.6
228,908 + LRK53_RS00900 0.72 +0.2
228,909 - LRK53_RS00900 0.72 -0.2
228,909 - LRK53_RS00900 0.72 -0.3
228,909 - LRK53_RS00900 0.72 -1.2
228,909 - LRK53_RS00900 0.72 -1.6
228,909 - LRK53_RS00900 0.72 -1.8
228,909 - LRK53_RS00900 0.72 +1.8
228,909 - LRK53_RS00900 0.72 +3.0
228,909 - LRK53_RS00900 0.72 -0.6
228,909 - LRK53_RS00900 0.72 -2.0
228,909 - LRK53_RS00900 0.72 -0.8
228,909 - LRK53_RS00900 0.72 +0.4
228,909 - LRK53_RS00900 0.72 -0.4
228,909 - LRK53_RS00900 0.72 -1.1
228,909 - LRK53_RS00900 0.72 +0.6
228,909 - LRK53_RS00900 0.72 -0.4
228,909 - LRK53_RS00900 0.72 -0.5
228,909 - LRK53_RS00900 0.72 -1.6
228,909 - LRK53_RS00900 0.72 -1.6
228,909 - LRK53_RS00900 0.72 +1.8
228,909 - LRK53_RS00900 0.72 -0.8
228,909 - LRK53_RS00900 0.72 -0.3
228,909 - LRK53_RS00900 0.72 +0.7
228,909 - LRK53_RS00900 0.72 +0.6
228,909 - LRK53_RS00900 0.72 -1.0
228,909 - LRK53_RS00900 0.72 -0.2
228,909 - LRK53_RS00900 0.72 +0.6
228,909 - LRK53_RS00900 0.72 +0.0
228,909 - LRK53_RS00900 0.72 -1.0
228,909 - LRK53_RS00900 0.72 +0.8
228,909 - LRK53_RS00900 0.72 +0.1
228,909 - LRK53_RS00900 0.72 -0.7
228,909 - LRK53_RS00900 0.72 +1.0
228,909 - LRK53_RS00900 0.72 -1.3
229,023 + LRK53_RS00900 0.80 -0.6
229,023 + LRK53_RS00900 0.80 -0.6
229,024 - LRK53_RS00900 0.80 +0.1
229,024 - LRK53_RS00900 0.80 +0.0
229,024 - LRK53_RS00900 0.80 +0.3
229,024 - LRK53_RS00900 0.80 +1.0
229,024 - LRK53_RS00900 0.80 -1.0
229,024 - LRK53_RS00900 0.80 -0.8
229,027 + LRK53_RS00900 0.80 -0.6
229,027 + LRK53_RS00900 0.80 -0.4
229,027 + LRK53_RS00900 0.80 +0.2
229,027 + LRK53_RS00900 0.80 +1.0
229,027 + LRK53_RS00900 0.80 -0.4
229,027 + LRK53_RS00900 0.80 -0.4
229,027 + LRK53_RS00900 0.80 +0.6
229,027 + LRK53_RS00900 0.80 -0.6
229,027 + LRK53_RS00900 0.80 -2.1
229,027 + LRK53_RS00900 0.80 -0.5
229,028 - LRK53_RS00900 0.80 +2.6
229,028 - LRK53_RS00900 0.80 -1.1
229,028 - LRK53_RS00900 0.80 +1.0
229,028 - LRK53_RS00900 0.80 -0.8
229,028 - LRK53_RS00900 0.80 +0.0
229,028 - LRK53_RS00900 0.80 +2.0
229,028 - LRK53_RS00900 0.80 +0.3
229,028 - LRK53_RS00900 0.80 -1.3
229,028 - LRK53_RS00900 0.80 -1.3
229,028 - LRK53_RS00900 0.80 +0.6
229,028 - LRK53_RS00900 0.80 -1.0
229,028 - LRK53_RS00900 0.80 +1.0
229,028 - LRK53_RS00900 0.80 +0.6
229,028 - LRK53_RS00900 0.80 -0.1
229,028 - LRK53_RS00900 0.80 +1.0
229,029 + LRK53_RS00900 0.80 +1.0
229,029 + LRK53_RS00900 0.80 -1.0
229,029 + LRK53_RS00900 0.80 -0.4
229,029 + LRK53_RS00900 0.80 -1.8
229,029 + LRK53_RS00900 0.80 +2.0
229,029 + LRK53_RS00900 0.80 -0.2
229,029 + LRK53_RS00900 0.80 -0.7
229,030 - LRK53_RS00900 0.80 -1.0
229,030 - LRK53_RS00900 0.80 +1.0
229,030 - LRK53_RS00900 0.80 +0.2
229,030 - LRK53_RS00900 0.80 -2.1
229,030 - LRK53_RS00900 0.80 -0.0
229,030 - LRK53_RS00900 0.80 -1.3
229,030 - LRK53_RS00900 0.80 -0.1
229,030 - LRK53_RS00900 0.80 +1.0
229,030 - LRK53_RS00900 0.80 -1.8
229,030 - LRK53_RS00900 0.80 -2.4
229,334 + -0.6
229,334 + +0.0
229,334 + -1.0
229,335 - +0.4
229,335 - -1.6
229,439 + LRK53_RS00905 0.20 -0.8
229,440 - LRK53_RS00905 0.20 +0.0
229,440 - LRK53_RS00905 0.20 +2.0
229,682 + LRK53_RS00905 0.56 -0.2
229,682 + LRK53_RS00905 0.56 -1.6
229,682 + LRK53_RS00905 0.56 -1.1
229,682 + LRK53_RS00905 0.56 -0.6
229,682 + LRK53_RS00905 0.56 +0.0
229,683 - LRK53_RS00905 0.56 +0.2
229,683 - LRK53_RS00905 0.56 -3.6
229,770 + LRK53_RS00905 0.69 -1.6
229,899 + LRK53_RS00905 0.89 +0.0
229,899 + LRK53_RS00905 0.89 -0.8
229,899 + LRK53_RS00905 0.89 -2.7
229,899 + LRK53_RS00905 0.89 -1.1
229,899 + LRK53_RS00905 0.89 -2.1
229,899 + LRK53_RS00905 0.89 +0.3
229,900 - LRK53_RS00905 0.89 -0.3
229,901 + LRK53_RS00905 0.89 -1.3
229,902 - LRK53_RS00905 0.89 -0.6
229,902 - LRK53_RS00905 0.89 -1.6
230,090 - +1.4
230,090 - +0.4
230,091 + +0.7
230,091 + -0.6
230,091 + -0.2
230,091 + -0.6
230,091 + +0.1
230,092 - +0.2
230,402 + +1.0
230,560 + -0.6
230,560 + +0.4
230,560 + +0.0
230,560 + -0.2
230,560 + -0.3
230,560 + +0.3
230,560 + +1.0
230,560 + -0.3
230,561 - -1.3
230,561 - -0.3
230,561 - +1.0
230,561 - +0.3
230,570 - LRK53_RS00910 0.10 -1.3
230,572 + LRK53_RS00910 0.10 -0.6
230,572 + LRK53_RS00910 0.10 -0.6
230,572 + LRK53_RS00910 0.10 +1.4
230,572 + LRK53_RS00910 0.10 -1.0
230,572 + LRK53_RS00910 0.10 -2.0
230,572 + LRK53_RS00910 0.10 -1.3
230,572 + LRK53_RS00910 0.10 +3.0
230,572 + LRK53_RS00910 0.10 +0.2
230,572 + LRK53_RS00910 0.10 +2.0
230,572 + LRK53_RS00910 0.10 +1.0
230,572 + LRK53_RS00910 0.10 -0.3
230,572 + LRK53_RS00910 0.10 +2.4
230,572 + LRK53_RS00910 0.10 +1.0
230,572 + LRK53_RS00910 0.10 -0.4
230,573 - LRK53_RS00910 0.10 +0.0
230,573 - LRK53_RS00910 0.10 -2.1
230,573 - LRK53_RS00910 0.10 -0.6
230,573 - LRK53_RS00910 0.10 -0.8
230,573 - LRK53_RS00910 0.10 +1.6
230,573 - LRK53_RS00910 0.10 +0.0
230,573 - LRK53_RS00910 0.10 +0.1
230,605 + LRK53_RS00910 0.12 +1.0
230,605 + LRK53_RS00910 0.12 +1.0
230,605 + LRK53_RS00910 0.12 -0.8
230,605 + LRK53_RS00910 0.12 -0.4
230,606 - LRK53_RS00910 0.12 +1.0
230,606 - LRK53_RS00910 0.12 +1.0
230,723 - LRK53_RS00910 0.16 -0.6
230,826 + LRK53_RS00910 0.19 +0.4
230,827 - LRK53_RS00910 0.19 +0.0
230,840 - LRK53_RS00910 0.20 +0.7
230,840 - LRK53_RS00910 0.20 -1.0
230,893 + LRK53_RS00910 0.21 +1.0
230,893 + LRK53_RS00910 0.21 -0.8
230,893 + LRK53_RS00910 0.21 +0.0
230,894 - LRK53_RS00910 0.21 +0.3
230,894 - LRK53_RS00910 0.21 +2.0
230,894 - LRK53_RS00910 0.21 -1.6

Or see this region's nucleotide sequence