Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00390 and LRK53_RS00395 are separated by 217 nucleotides LRK53_RS00395 and LRK53_RS00400 are separated by 287 nucleotides
LRK53_RS00390: LRK53_RS00390 - 4,5-DOPA dioxygenase extradiol, at 88,534 to 89,331
_RS00390
LRK53_RS00395: LRK53_RS00395 - SDR family oxidoreductase, at 89,549 to 90,313
_RS00395
LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839
_RS00400
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.549 kb on - strand at 88.549 kb on - strand at 88.696 kb on + strand, within LRK53_RS00390 at 88.696 kb on + strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.909 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.287 kb on - strand at 89.343 kb on + strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.484 kb on + strand at 89.484 kb on + strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.748 kb on - strand, within LRK53_RS00395 at 89.748 kb on - strand, within LRK53_RS00395 at 89.809 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.952 kb on + strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.385 kb on + strand at 90.385 kb on + strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.641 kb on + strand at 90.641 kb on + strand at 90.642 kb on - strand at 90.792 kb on + strand, within LRK53_RS00400 at 90.893 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.262 kb on + strand, within LRK53_RS00400 at 91.263 kb on - strand, within LRK53_RS00400
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 88,549 - -0.7 88,549 - +0.0 88,696 + LRK53_RS00390 0.20 +1.2 88,696 + LRK53_RS00390 0.20 -0.7 88,697 - LRK53_RS00390 0.20 -1.0 88,697 - LRK53_RS00390 0.20 +0.5 88,697 - LRK53_RS00390 0.20 -0.1 88,697 - LRK53_RS00390 0.20 -0.8 88,697 - LRK53_RS00390 0.20 +0.3 88,787 - LRK53_RS00390 0.32 -1.0 88,787 - LRK53_RS00390 0.32 -0.0 88,909 + LRK53_RS00390 0.47 +0.0 89,062 + LRK53_RS00390 0.66 +0.0 89,062 + LRK53_RS00390 0.66 +1.0 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 -2.1 89,062 + LRK53_RS00390 0.66 +1.5 89,062 + LRK53_RS00390 0.66 -1.2 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 +0.5 89,062 + LRK53_RS00390 0.66 +0.5 89,062 + LRK53_RS00390 0.66 +1.0 89,062 + LRK53_RS00390 0.66 +0.0 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 +0.0 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 +0.5 89,062 + LRK53_RS00390 0.66 +1.0 89,062 + LRK53_RS00390 0.66 +0.5 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 +0.2 89,062 + LRK53_RS00390 0.66 +0.4 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -0.6 89,062 + LRK53_RS00390 0.66 +1.3 89,062 + LRK53_RS00390 0.66 +0.4 89,062 + LRK53_RS00390 0.66 +1.0 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -0.6 89,063 - LRK53_RS00390 0.66 -0.1 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 +0.1 89,063 - LRK53_RS00390 0.66 -1.1 89,063 - LRK53_RS00390 0.66 +0.6 89,063 - LRK53_RS00390 0.66 -1.5 89,063 - LRK53_RS00390 0.66 +0.2 89,063 - LRK53_RS00390 0.66 -1.3 89,063 - LRK53_RS00390 0.66 -0.7 89,063 - LRK53_RS00390 0.66 +1.6 89,063 - LRK53_RS00390 0.66 -1.0 89,063 - LRK53_RS00390 0.66 +1.5 89,063 - LRK53_RS00390 0.66 +1.3 89,063 - LRK53_RS00390 0.66 -1.8 89,063 - LRK53_RS00390 0.66 -1.6 89,063 - LRK53_RS00390 0.66 +0.2 89,063 - LRK53_RS00390 0.66 +1.0 89,063 - LRK53_RS00390 0.66 +0.7 89,063 - LRK53_RS00390 0.66 +2.0 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 +0.4 89,167 + LRK53_RS00390 0.79 -2.2 89,167 + LRK53_RS00390 0.79 +1.6 89,167 + LRK53_RS00390 0.79 -0.8 89,167 + LRK53_RS00390 0.79 -0.6 89,167 + LRK53_RS00390 0.79 -0.2 89,167 + LRK53_RS00390 0.79 +0.0 89,167 + LRK53_RS00390 0.79 -1.7 89,167 + LRK53_RS00390 0.79 +0.0 89,167 + LRK53_RS00390 0.79 -0.7 89,168 - LRK53_RS00390 0.79 +1.0 89,218 + LRK53_RS00390 0.86 -0.5 89,218 + LRK53_RS00390 0.86 +0.7 89,219 - LRK53_RS00390 0.86 -2.3 89,219 - LRK53_RS00390 0.86 +0.0 89,219 - LRK53_RS00390 0.86 -0.4 89,233 + LRK53_RS00390 0.88 +2.0 89,233 + LRK53_RS00390 0.88 +0.0 89,233 + LRK53_RS00390 0.88 -0.9 89,233 + LRK53_RS00390 0.88 -0.1 89,233 + LRK53_RS00390 0.88 +0.7 89,233 + LRK53_RS00390 0.88 +0.0 89,233 + LRK53_RS00390 0.88 +0.2 89,233 + LRK53_RS00390 0.88 +2.6 89,233 + LRK53_RS00390 0.88 +0.3 89,234 - LRK53_RS00390 0.88 +0.2 89,234 - LRK53_RS00390 0.88 -0.2 89,234 - LRK53_RS00390 0.88 -1.3 89,234 - LRK53_RS00390 0.88 -1.8 89,234 - LRK53_RS00390 0.88 -0.3 89,234 - LRK53_RS00390 0.88 +0.0 89,234 - LRK53_RS00390 0.88 -0.1 89,234 - LRK53_RS00390 0.88 -1.0 89,234 - LRK53_RS00390 0.88 -1.3 89,234 - LRK53_RS00390 0.88 -1.6 89,234 - LRK53_RS00390 0.88 +0.6 89,234 - LRK53_RS00390 0.88 -1.0 89,234 - LRK53_RS00390 0.88 +0.3 89,287 - -0.6 89,343 + -0.6 89,344 - -1.3 89,344 - -1.3 89,344 - +0.0 89,344 - +1.0 89,344 - -0.6 89,484 + +0.6 89,484 + +1.4 89,485 - +0.4 89,485 - -1.3 89,485 - -1.2 89,485 - -0.6 89,748 - LRK53_RS00395 0.26 +0.0 89,748 - LRK53_RS00395 0.26 -0.6 89,809 - LRK53_RS00395 0.34 -0.6 89,872 - LRK53_RS00395 0.42 -1.6 89,872 - LRK53_RS00395 0.42 -1.4 89,952 + LRK53_RS00395 0.53 -0.1 89,953 - LRK53_RS00395 0.53 +2.0 89,953 - LRK53_RS00395 0.53 -0.8 89,953 - LRK53_RS00395 0.53 -1.1 90,077 + LRK53_RS00395 0.69 +1.8 90,077 + LRK53_RS00395 0.69 -0.6 90,078 - LRK53_RS00395 0.69 -0.3 90,078 - LRK53_RS00395 0.69 -1.7 90,385 + +0.0 90,385 + -1.2 90,386 - -0.6 90,386 - -0.2 90,386 - -0.1 90,386 - +0.3 90,386 - +0.3 90,641 + -0.3 90,641 + -0.6 90,642 - -0.4 90,792 + LRK53_RS00400 0.15 +1.0 90,893 + LRK53_RS00400 0.24 +0.3 91,094 + LRK53_RS00400 0.40 -0.3 91,094 + LRK53_RS00400 0.40 -2.3 91,094 + LRK53_RS00400 0.40 +0.6 91,094 + LRK53_RS00400 0.40 -0.6 91,095 - LRK53_RS00400 0.40 +0.4 91,095 - LRK53_RS00400 0.40 +0.0 91,095 - LRK53_RS00400 0.40 -2.4 91,262 + LRK53_RS00400 0.53 -0.3 91,263 - LRK53_RS00400 0.53 +1.4
Or see this region's nucleotide sequence