Experiment: NLDM_defined low iron; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00255 and LRK53_RS00260 are separated by 65 nucleotides LRK53_RS00260 and LRK53_RS00265 are separated by 130 nucleotides LRK53_RS00265 and LRK53_RS00270 are separated by 53 nucleotides LRK53_RS00270 and LRK53_RS00275 are separated by 23 nucleotides
LRK53_RS00255: LRK53_RS00255 - PQQ-dependent sugar dehydrogenase, at 62,909 to 64,072
_RS00255
LRK53_RS00260: LRK53_RS00260 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 64,138 to 64,761
_RS00260
LRK53_RS00265: LRK53_RS00265 - DUF1328 domain-containing protein, at 64,892 to 65,047
_RS00265
LRK53_RS00270: LRK53_RS00270 - DUF883 family protein, at 65,101 to 65,463
_RS00270
LRK53_RS00275: LRK53_RS00275 - hypothetical protein, at 65,487 to 65,957
_RS00275
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.209 kb on + strand, within LRK53_RS00255 at 63.210 kb on - strand, within LRK53_RS00255 at 63.210 kb on - strand, within LRK53_RS00255 at 63.210 kb on - strand, within LRK53_RS00255 at 63.210 kb on - strand, within LRK53_RS00255 at 63.210 kb on - strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.359 kb on + strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.360 kb on - strand, within LRK53_RS00255 at 63.611 kb on + strand, within LRK53_RS00255 at 63.611 kb on + strand, within LRK53_RS00255 at 63.611 kb on + strand, within LRK53_RS00255 at 63.612 kb on - strand, within LRK53_RS00255 at 63.612 kb on - strand, within LRK53_RS00255 at 63.612 kb on - strand, within LRK53_RS00255 at 63.612 kb on - strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.671 kb on + strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.672 kb on - strand, within LRK53_RS00255 at 63.694 kb on - strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.728 kb on + strand, within LRK53_RS00255 at 63.729 kb on - strand, within LRK53_RS00255 at 63.729 kb on - strand, within LRK53_RS00255 at 63.860 kb on + strand, within LRK53_RS00255 at 63.861 kb on - strand, within LRK53_RS00255 at 63.861 kb on - strand, within LRK53_RS00255 at 63.861 kb on - strand, within LRK53_RS00255 at 63.861 kb on - strand, within LRK53_RS00255 at 63.977 kb on + strand at 63.977 kb on + strand at 63.978 kb on - strand at 63.989 kb on + strand at 63.989 kb on + strand at 63.989 kb on + strand at 63.989 kb on + strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 63.990 kb on - strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.051 kb on - strand at 64.076 kb on + strand at 64.077 kb on - strand at 64.077 kb on - strand at 64.077 kb on - strand at 64.077 kb on - strand at 64.088 kb on - strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.137 kb on + strand at 64.138 kb on - strand at 64.138 kb on - strand at 64.138 kb on - strand at 64.156 kb on + strand at 64.156 kb on + strand at 64.156 kb on + strand at 64.156 kb on + strand at 64.157 kb on - strand at 64.157 kb on - strand at 64.157 kb on - strand at 64.157 kb on - strand at 64.513 kb on + strand, within LRK53_RS00260 at 64.514 kb on - strand, within LRK53_RS00260 at 64.555 kb on + strand, within LRK53_RS00260 at 64.555 kb on + strand, within LRK53_RS00260 at 64.565 kb on - strand, within LRK53_RS00260 at 64.609 kb on + strand, within LRK53_RS00260 at 64.609 kb on + strand, within LRK53_RS00260 at 64.609 kb on + strand, within LRK53_RS00260 at 64.609 kb on + strand, within LRK53_RS00260 at 64.609 kb on + strand, within LRK53_RS00260 at 64.610 kb on - strand, within LRK53_RS00260 at 64.610 kb on - strand, within LRK53_RS00260 at 64.729 kb on - strand at 64.729 kb on - strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.733 kb on - strand at 64.901 kb on + strand at 64.901 kb on + strand at 64.901 kb on + strand at 64.902 kb on - strand at 64.902 kb on - strand at 64.902 kb on - strand at 65.383 kb on + strand, within LRK53_RS00270 at 65.383 kb on + strand, within LRK53_RS00270 at 65.383 kb on + strand, within LRK53_RS00270 at 65.383 kb on + strand, within LRK53_RS00270 at 65.383 kb on + strand, within LRK53_RS00270 at 65.383 kb on + strand, within LRK53_RS00270 at 65.384 kb on - strand, within LRK53_RS00270
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog remove 63,209 + LRK53_RS00255 0.26 +0.6 63,209 + LRK53_RS00255 0.26 +0.7 63,209 + LRK53_RS00255 0.26 +0.4 63,209 + LRK53_RS00255 0.26 -1.0 63,209 + LRK53_RS00255 0.26 -1.1 63,209 + LRK53_RS00255 0.26 -1.0 63,209 + LRK53_RS00255 0.26 -0.4 63,209 + LRK53_RS00255 0.26 -0.3 63,209 + LRK53_RS00255 0.26 -0.6 63,209 + LRK53_RS00255 0.26 -1.1 63,209 + LRK53_RS00255 0.26 -1.8 63,209 + LRK53_RS00255 0.26 -0.5 63,209 + LRK53_RS00255 0.26 -0.1 63,209 + LRK53_RS00255 0.26 +0.7 63,209 + LRK53_RS00255 0.26 -1.0 63,210 - LRK53_RS00255 0.26 +1.8 63,210 - LRK53_RS00255 0.26 +0.3 63,210 - LRK53_RS00255 0.26 +1.0 63,210 - LRK53_RS00255 0.26 -0.7 63,210 - LRK53_RS00255 0.26 -2.5 63,359 + LRK53_RS00255 0.39 +0.0 63,359 + LRK53_RS00255 0.39 +0.0 63,359 + LRK53_RS00255 0.39 +0.8 63,359 + LRK53_RS00255 0.39 -0.9 63,359 + LRK53_RS00255 0.39 +1.0 63,359 + LRK53_RS00255 0.39 -0.3 63,359 + LRK53_RS00255 0.39 +0.0 63,359 + LRK53_RS00255 0.39 -0.6 63,359 + LRK53_RS00255 0.39 -0.1 63,360 - LRK53_RS00255 0.39 -1.1 63,360 - LRK53_RS00255 0.39 -0.5 63,360 - LRK53_RS00255 0.39 -2.1 63,360 - LRK53_RS00255 0.39 -0.6 63,360 - LRK53_RS00255 0.39 +0.2 63,360 - LRK53_RS00255 0.39 -1.0 63,360 - LRK53_RS00255 0.39 -1.0 63,360 - LRK53_RS00255 0.39 -1.3 63,360 - LRK53_RS00255 0.39 -1.1 63,360 - LRK53_RS00255 0.39 -1.8 63,611 + LRK53_RS00255 0.60 -1.0 63,611 + LRK53_RS00255 0.60 -0.6 63,611 + LRK53_RS00255 0.60 +0.4 63,612 - LRK53_RS00255 0.60 +3.6 63,612 - LRK53_RS00255 0.60 -0.4 63,612 - LRK53_RS00255 0.60 -0.5 63,612 - LRK53_RS00255 0.60 -1.3 63,671 + LRK53_RS00255 0.65 +0.0 63,671 + LRK53_RS00255 0.65 +0.0 63,671 + LRK53_RS00255 0.65 +0.1 63,671 + LRK53_RS00255 0.65 +0.0 63,671 + LRK53_RS00255 0.65 -0.6 63,671 + LRK53_RS00255 0.65 +0.4 63,672 - LRK53_RS00255 0.66 +1.4 63,672 - LRK53_RS00255 0.66 -0.3 63,672 - LRK53_RS00255 0.66 +0.0 63,672 - LRK53_RS00255 0.66 +1.0 63,672 - LRK53_RS00255 0.66 +1.6 63,672 - LRK53_RS00255 0.66 +2.3 63,694 - LRK53_RS00255 0.67 -0.8 63,728 + LRK53_RS00255 0.70 +1.0 63,728 + LRK53_RS00255 0.70 +0.1 63,728 + LRK53_RS00255 0.70 +0.7 63,728 + LRK53_RS00255 0.70 +1.0 63,728 + LRK53_RS00255 0.70 -0.4 63,728 + LRK53_RS00255 0.70 -1.6 63,729 - LRK53_RS00255 0.70 +2.0 63,729 - LRK53_RS00255 0.70 +0.0 63,860 + LRK53_RS00255 0.82 -0.7 63,861 - LRK53_RS00255 0.82 +0.5 63,861 - LRK53_RS00255 0.82 +0.1 63,861 - LRK53_RS00255 0.82 -0.6 63,861 - LRK53_RS00255 0.82 -0.5 63,977 + -0.6 63,977 + +1.0 63,978 - -0.5 63,989 + -2.9 63,989 + -0.4 63,989 + +2.0 63,989 + +0.0 63,990 - +0.3 63,990 - -0.2 63,990 - +0.0 63,990 - -0.4 63,990 - +1.0 63,990 - -1.0 63,990 - -1.2 63,990 - -1.7 63,990 - -1.3 63,990 - -1.8 63,990 - -1.9 63,990 - -1.6 63,990 - +0.0 64,050 + +1.6 64,050 + -0.5 64,050 + -0.5 64,050 + -1.8 64,050 + +1.2 64,050 + +0.3 64,050 + -1.6 64,050 + +0.3 64,050 + +0.6 64,050 + -0.4 64,050 + +1.3 64,050 + +0.0 64,050 + -1.3 64,050 + +2.0 64,050 + +0.0 64,051 - -1.0 64,051 - +0.0 64,051 - -0.4 64,051 - -0.7 64,051 - -1.0 64,051 - -1.0 64,051 - +0.0 64,051 - +0.0 64,076 + +1.3 64,077 - +1.0 64,077 - -1.3 64,077 - -0.4 64,077 - -0.6 64,088 - -0.7 64,137 + -0.1 64,137 + -1.6 64,137 + -0.5 64,137 + +1.0 64,137 + -1.1 64,137 + -1.0 64,137 + +0.4 64,137 + -1.3 64,137 + -0.8 64,137 + -0.6 64,137 + -2.9 64,137 + -0.3 64,137 + -0.2 64,138 - -1.1 64,138 - +0.3 64,138 - -1.1 64,156 + +0.5 64,156 + -1.0 64,156 + -1.6 64,156 + +0.6 64,157 - -0.6 64,157 - -1.0 64,157 - -0.7 64,157 - -1.4 64,513 + LRK53_RS00260 0.60 -2.7 64,514 - LRK53_RS00260 0.60 -1.3 64,555 + LRK53_RS00260 0.67 +0.3 64,555 + LRK53_RS00260 0.67 +0.2 64,565 - LRK53_RS00260 0.68 -1.7 64,609 + LRK53_RS00260 0.75 -1.0 64,609 + LRK53_RS00260 0.75 +1.0 64,609 + LRK53_RS00260 0.75 -2.1 64,609 + LRK53_RS00260 0.75 -0.8 64,609 + LRK53_RS00260 0.75 -0.6 64,610 - LRK53_RS00260 0.76 -1.0 64,610 - LRK53_RS00260 0.76 -0.6 64,729 - +1.1 64,729 - -0.4 64,732 + -0.5 64,732 + -0.4 64,732 + -1.1 64,732 + -1.1 64,732 + +0.8 64,732 + -0.6 64,732 + +0.4 64,732 + -0.7 64,733 - -0.1 64,733 - +1.2 64,733 - -0.2 64,733 - +0.0 64,733 - -0.4 64,733 - -1.8 64,733 - +0.9 64,733 - +0.0 64,901 + -0.6 64,901 + +0.8 64,901 + -0.8 64,902 - -0.1 64,902 - -0.4 64,902 - -1.6 65,383 + LRK53_RS00270 0.78 +1.0 65,383 + LRK53_RS00270 0.78 -0.6 65,383 + LRK53_RS00270 0.78 +0.3 65,383 + LRK53_RS00270 0.78 -0.2 65,383 + LRK53_RS00270 0.78 -0.4 65,383 + LRK53_RS00270 0.78 -0.7 65,384 - LRK53_RS00270 0.78 -0.1
Or see this region's nucleotide sequence